Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:75384862-76645252

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l9Rl6 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 6
l9Rl5 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 5
l9Rl7 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 7
l9Rl8 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 8
l9Rl1 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 1
l9Rl2 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 2
l9Rl3 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 3
l9Rl4 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 4
Mapk6 9 75386782 to 75410019 23237 - protein coding gene mitogen-activated protein kinase 6
Tssr90534 9 75387226 to 75387247 21 - TSS region transcription start site region 90534
Tssr90535 9 75387468 to 75387489 21 - TSS region transcription start site region 90535
Tssr90536 9 75387887 to 75387898 11 - TSS region transcription start site region 90536
Tssr90537 9 75387959 to 75387973 14 - TSS region transcription start site region 90537
Tssr90538 9 75387990 to 75388001 11 - TSS region transcription start site region 90538
Tssr86167 9 75407018 to 75407028 10 + TSS region transcription start site region 86167
Tssr90539 9 75407903 to 75407907 4 - TSS region transcription start site region 90539
Tssr86168 9 75408054 to 75408079 25 + TSS region transcription start site region 86168
Tssr86169 9 75408086 to 75408099 13 + TSS region transcription start site region 86169
Tssr86170 9 75408115 to 75408124 9 + TSS region transcription start site region 86170
Tssr86171 9 75408324 to 75408328 4 + TSS region transcription start site region 86171
Cpgi22045 9 75408939 to 75410517 1578 CpG island CpG island 22045
Tssr90540 9 75409282 to 75409336 54 - TSS region transcription start site region 90540
Tssr90541 9 75409352 to 75409383 31 - TSS region transcription start site region 90541
Tssr90542 9 75409591 to 75409643 52 - TSS region transcription start site region 90542
Tssr90543 9 75409951 to 75410039 88 - TSS region transcription start site region 90543
Tssr86172 9 75410145 to 75410176 31 + TSS region transcription start site region 86172
4933433G15Rik 9 75410184 to 75415537 5353 + lincRNA gene RIKEN cDNA 4933433G15 gene
Tssr86173 9 75410203 to 75410217 14 + TSS region transcription start site region 86173
Tssr2942 9 75410209 to 75410220 11 - TSS region transcription start site region 2942
Tssr90544 9 75422401 to 75422445 44 - TSS region transcription start site region 90544
Tssr86174 9 75434343 to 75434354 11 + TSS region transcription start site region 86174
Tssr86175 9 75434437 to 75434442 5 + TSS region transcription start site region 86175
Tssr86176 9 75438125 to 75438130 5 + TSS region transcription start site region 86176
Cpgi22046 9 75441188 to 75442148 960 CpG island CpG island 22046
Tssr86177 9 75441478 to 75441489 11 + TSS region transcription start site region 86177
Tssr86178 9 75441518 to 75441575 57 + TSS region transcription start site region 86178
Leo1 9 75441524 to 75466432 24908 + protein coding gene Leo1, Paf1/RNA polymerase II complex component
Tssr86179 9 75468559 to 75468585 26 + TSS region transcription start site region 86179
Tssr86180 9 75468589 to 75468597 8 + TSS region transcription start site region 86180
Gm7972 9 75468616 to 75486681 18065 + pseudogene predicted gene 7972
Tmod3 9 75497784 to 75559687 61903 - protein coding gene tropomodulin 3
D9Mit262 9 75501755 to 75501893 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 262
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
Gm48789 9 75520374 to 75520502 128 - pseudogene predicted gene, 48789
Tssr2943 9 75538250 to 75538254 4 + TSS region transcription start site region 2943
Tssr90545 9 75541693 to 75541721 28 - TSS region transcription start site region 90545
Cpgi22047 9 75558989 to 75559843 854 CpG island CpG island 22047
Tssr90546 9 75559583 to 75559594 11 - TSS region transcription start site region 90546
Tssr90547 9 75559604 to 75559665 61 - TSS region transcription start site region 90547
Tmod2 9 75565621 to 75611325 45704 - protein coding gene tropomodulin 2
Tssr90548 9 75566726 to 75566731 5 - TSS region transcription start site region 90548
Tssr90549 9 75567321 to 75567354 33 - TSS region transcription start site region 90549
Tssr90550 9 75567488 to 75567502 14 - TSS region transcription start site region 90550
Tssr90551 9 75572800 to 75572804 4 - TSS region transcription start site region 90551
Gm48822 9 75582739 to 75585109 2370 - unclassified gene predicted gene, 48822
Tssr90552 9 75597643 to 75597656 13 - TSS region transcription start site region 90552
Tssr90553 9 75597674 to 75597712 38 - TSS region transcription start site region 90553
Tssr90554 9 75597717 to 75597738 21 - TSS region transcription start site region 90554
Tssr90555 9 75599089 to 75599104 15 - TSS region transcription start site region 90555
Tssr90556 9 75599108 to 75599118 10 - TSS region transcription start site region 90556
Tssr90557 9 75599124 to 75599141 17 - TSS region transcription start site region 90557
Cpgi22048 9 75610550 to 75611683 1133 CpG island CpG island 22048
Tssr90558 9 75611076 to 75611102 26 - TSS region transcription start site region 90558
Tssr90559 9 75611104 to 75611182 78 - TSS region transcription start site region 90559
Tssr90560 9 75611216 to 75611223 7 - TSS region transcription start site region 90560
Tssr90561 9 75611278 to 75611295 17 - TSS region transcription start site region 90561
Tssr90562 9 75611308 to 75611334 26 - TSS region transcription start site region 90562
Tssr90563 9 75611340 to 75611359 19 - TSS region transcription start site region 90563
D9Mit235 9 75621814 to 75621923 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 235
Cpgi22049 9 75624978 to 75626531 1553 CpG island CpG island 22049
Tssr86181 9 75625399 to 75625420 21 + TSS region transcription start site region 86181
Tssr86182 9 75625707 to 75625770 63 + TSS region transcription start site region 86182
Lysmd2 9 75625741 to 75637771 12030 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 2
Tssr86183 9 75625842 to 75625885 43 + TSS region transcription start site region 86183
Tssr86184 9 75625967 to 75625981 14 + TSS region transcription start site region 86184
Tssr86185 9 75626136 to 75626179 43 + TSS region transcription start site region 86185
D9Dcr12 9 75640183 to 75640293 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 12
D9Mit263 9 75640192 to 75640288 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 263
Tssr90564 9 75642111 to 75642123 12 - TSS region transcription start site region 90564
Tssr90565 9 75642244 to 75642259 15 - TSS region transcription start site region 90565
Tssr90566 9 75642310 to 75642326 16 - TSS region transcription start site region 90566
Scg3 9 75643189 to 75684056 40867 - protein coding gene secretogranin III
Tssr90567 9 75643221 to 75643237 16 - TSS region transcription start site region 90567
Gm37871 9 75666652 to 75667339 687 + unclassified gene predicted gene, 37871
Tssr90568 9 75683349 to 75683357 8 - TSS region transcription start site region 90568
Cpgi22050 9 75683640 to 75684317 677 CpG island CpG island 22050
Tssr90569 9 75683847 to 75683855 8 - TSS region transcription start site region 90569
Tssr90570 9 75683909 to 75683914 5 - TSS region transcription start site region 90570
Tssr90571 9 75683971 to 75683989 18 - TSS region transcription start site region 90571
Tssr90572 9 75683992 to 75684046 54 - TSS region transcription start site region 90572
Tssr90573 9 75684074 to 75684083 9 - TSS region transcription start site region 90573
Gm3671 9 75693653 to 75694659 1006 - pseudogene predicted gene 3671
Gm39373 9 75763525 to 75769160 5635 + lncRNA gene predicted gene, 39373
Tssr86186 9 75775355 to 75775378 23 + TSS region transcription start site region 86186
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Bmp5 9 75775364 to 75900310 124946 + protein coding gene bone morphogenetic protein 5
Tssr86187 9 75775668 to 75775687 19 + TSS region transcription start site region 86187
Tssr86188 9 75775694 to 75775715 21 + TSS region transcription start site region 86188
Gm47723 9 75876260 to 75877713 1453 + unclassified gene predicted gene, 47723
Gm26903 9 75897843 to 76015192 117349 - antisense lncRNA gene predicted gene, 26903
Gm44355 9 75911422 to 75911525 103 + miRNA gene predicted gene, 44355
Gm34005 9 75964204 to 75964485 281 + pseudogene predicted gene, 34005
Gm25300 9 75970944 to 75971027 83 - snRNA gene predicted gene, 25300
Tssr90574 9 75971025 to 75971031 6 - TSS region transcription start site region 90574
Hmgcll1 9 76014855 to 76136350 121495 + protein coding gene 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
Cpgi22051 9 76014862 to 76015252 390 CpG island CpG island 22051
Tssr86189 9 76014954 to 76015020 66 + TSS region transcription start site region 86189
D9Mit124 9 76066526 to 76066652 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 124
Gm38083 9 76067449 to 76070946 3497 + unclassified gene predicted gene, 38083
Fembrs6 9 76117105 to 76117252 147 QTL femur breaking strength 6
D9Mit270 9 76117105 to 76117252 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 270
Stheal9 9 76117105 to 76117252 147 QTL soft tissue heal 9
Gfral 9 76164102 to 76213657 49555 - protein coding gene GDNF family receptor alpha like
Hcrtr2 9 76225880 to 76323578 97698 - protein coding gene hypocretin (orexin) receptor 2
D9Mit122 9 76234058 to 76234202 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 122
D9Mit108 9 76234067 to 76234326 259 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 108
D9Dcr13 9 76284406 to 76284501 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 13
Tssr86190 9 76312452 to 76312469 17 + TSS region transcription start site region 86190
Tssr86191 9 76312508 to 76312518 10 + TSS region transcription start site region 86191
Gm27234 9 76319577 to 76320846 1269 + antisense lncRNA gene predicted gene 27234
Cpgi22052 9 76323167 to 76323741 574 CpG island CpG island 22052
Tssr90575 9 76323559 to 76323586 27 - TSS region transcription start site region 90575
Tssr90576 9 76362117 to 76362128 11 - TSS region transcription start site region 90576
Tssr90577 9 76362164 to 76362176 12 - TSS region transcription start site region 90577
Adip5 9 76462664 to 76462846 182 QTL adiposity 5
Skull13 9 76462664 to 76462846 182 QTL skull morphology 13
D9Mit8 9 76462664 to 76462846 182 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 8
Mobq8 9 76462664 to 76462846 182 QTL multigenic obesity QTL 8
Fam83b 9 76490054 to 76567116 77062 - protein coding gene family with sequence similarity 83, member B
D9Mit266 9 76499817 to 76499941 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 266
Cpgi22053 9 76566926 to 76567533 607 CpG island CpG island 22053
Tssr90578 9 76567092 to 76567123 31 - TSS region transcription start site region 90578
Tssr90579 9 76567126 to 76567131 5 - TSS region transcription start site region 90579
Tssr90580 9 76581661 to 76581674 13 - TSS region transcription start site region 90580
Tssr90581 9 76582021 to 76582044 23 - TSS region transcription start site region 90581
Tbbmd4 9 101528921 to 76117105 -25411816 QTL total body bone mineral density 4
El1 9 114474379 to 75775364 -38699015 QTL epilepsy 1
El7 9 114474379 to 75775364 -38699015 QTL epilepsy 7