Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:75080335-75544871

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myo5a 9 75071015 to 75223688 152673 + protein coding gene myosin VA
Tssr86136 9 75081137 to 75081139 2 + TSS region transcription start site region 86136
Gm9719 9 75098598 to 75099140 542 - pseudogene predicted gene 9719
Tssr90529 9 75099172 to 75099176 4 - TSS region transcription start site region 90529
n-TAagc4 9 75108930 to 75109012 82 - tRNA gene nuclear encoded tRNA alanine 4 (anticodon AGC)
Gm16353 9 75133408 to 75134141 733 - pseudogene predicted gene 16353
Tssr86137 9 75134153 to 75134193 40 + TSS region transcription start site region 86137
Tssr90530 9 75160674 to 75160710 36 - TSS region transcription start site region 90530
Tssr86138 9 75166312 to 75166351 39 + TSS region transcription start site region 86138
Tssr86139 9 75167225 to 75167238 13 + TSS region transcription start site region 86139
Tssr86140 9 75173993 to 75174004 11 + TSS region transcription start site region 86140
Tssr86141 9 75174061 to 75174072 11 + TSS region transcription start site region 86141
Tssr86142 9 75174079 to 75174096 17 + TSS region transcription start site region 86142
Tssr86143 9 75177672 to 75177692 20 + TSS region transcription start site region 86143
Tssr86144 9 75184176 to 75184196 20 + TSS region transcription start site region 86144
Tssr86145 9 75184274 to 75184285 11 + TSS region transcription start site region 86145
Tssr86146 9 75184347 to 75184402 55 + TSS region transcription start site region 86146
Tssr86147 9 75186038 to 75186054 16 + TSS region transcription start site region 86147
Tssr86148 9 75186057 to 75186073 16 + TSS region transcription start site region 86148
Tssr86149 9 75190235 to 75190248 13 + TSS region transcription start site region 86149
Tssr86150 9 75193297 to 75193311 14 + TSS region transcription start site region 86150
Tssr86151 9 75193386 to 75193404 18 + TSS region transcription start site region 86151
Tssr86152 9 75211630 to 75211634 4 + TSS region transcription start site region 86152
Tssr2941 9 75217438 to 75217452 14 + TSS region transcription start site region 2941
Tssr86153 9 75217470 to 75217483 13 + TSS region transcription start site region 86153
Tssr86154 9 75221026 to 75221059 33 + TSS region transcription start site region 86154
Cpgi22041 9 75231946 to 75232441 495 CpG island CpG island 22041
Tssr86155 9 75232013 to 75232033 20 + TSS region transcription start site region 86155
Myo5c 9 75232020 to 75305451 73431 + protein coding gene myosin VC
Tssr86156 9 75232050 to 75232084 34 + TSS region transcription start site region 86156
Gm33750 9 75235400 to 75237754 2354 - lncRNA gene predicted gene, 33750
Tssr90531 9 75254756 to 75254772 16 - TSS region transcription start site region 90531
Gnb5 9 75306288 to 75345876 39588 + protein coding gene guanine nucleotide binding protein (G protein), beta 5
Tssr86157 9 75306290 to 75306339 49 + TSS region transcription start site region 86157
A930005C09Rik 9 75306333 to 75307489 1156 unclassified gene RIKEN cDNA A930005C09 gene
Gm19531 9 75310335 to 75314871 4536 - antisense lncRNA gene predicted gene, 19531
Cpgi22042 9 75313764 to 75314818 1054 CpG island CpG island 22042
Tssr86158 9 75314133 to 75314210 77 + TSS region transcription start site region 86158
Tssr86159 9 75314211 to 75314233 22 + TSS region transcription start site region 86159
Tssr86160 9 75314235 to 75314265 30 + TSS region transcription start site region 86160
Gm48677 9 75317072 to 75342842 25770 - antisense lncRNA gene predicted gene, 48677
Tssr86161 9 75337410 to 75337412 2 + TSS region transcription start site region 86161
Tssr86162 9 75338135 to 75338163 28 + TSS region transcription start site region 86162
Tssr86163 9 75338334 to 75338365 31 + TSS region transcription start site region 86163
Tssr86164 9 75345106 to 75345112 6 + TSS region transcription start site region 86164
Tssr86165 9 75347755 to 75347763 8 + TSS region transcription start site region 86165
Bcl2l10 9 75347758 to 75351632 3874 + protein coding gene Bcl2-like 10
Cpgi22043 9 75347870 to 75348212 342 CpG island CpG island 22043
Tssr86166 9 75347889 to 75347893 4 + TSS region transcription start site region 86166
D9Mit305.2 9 75355492 to 75355605 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 305.2
D9Mit305 9 75355600 to 75355681 81 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 305
Cpgi22044 9 75372022 to 75372288 266 CpG island CpG island 22044
Gm18015 9 75372784 to 75373099 315 - pseudogene predicted gene, 18015
Tssr90532 9 75373202 to 75373252 50 - TSS region transcription start site region 90532
Gm5366 9 75374611 to 75375948 1337 - pseudogene predicted gene 5366
Tssr90533 9 75375958 to 75375981 23 - TSS region transcription start site region 90533
Mapk6 9 75386782 to 75410019 23237 - protein coding gene mitogen-activated protein kinase 6
Tssr90534 9 75387226 to 75387247 21 - TSS region transcription start site region 90534
Tssr90535 9 75387468 to 75387489 21 - TSS region transcription start site region 90535
Tssr90536 9 75387887 to 75387898 11 - TSS region transcription start site region 90536
Tssr90537 9 75387959 to 75387973 14 - TSS region transcription start site region 90537
Tssr90538 9 75387990 to 75388001 11 - TSS region transcription start site region 90538
Tssr86167 9 75407018 to 75407028 10 + TSS region transcription start site region 86167
Tssr90539 9 75407903 to 75407907 4 - TSS region transcription start site region 90539
Tssr86168 9 75408054 to 75408079 25 + TSS region transcription start site region 86168
Tssr86169 9 75408086 to 75408099 13 + TSS region transcription start site region 86169
Tssr86170 9 75408115 to 75408124 9 + TSS region transcription start site region 86170
Tssr86171 9 75408324 to 75408328 4 + TSS region transcription start site region 86171
Cpgi22045 9 75408939 to 75410517 1578 CpG island CpG island 22045
Tssr90540 9 75409282 to 75409336 54 - TSS region transcription start site region 90540
Tssr90541 9 75409352 to 75409383 31 - TSS region transcription start site region 90541
Tssr90542 9 75409591 to 75409643 52 - TSS region transcription start site region 90542
Tssr90543 9 75409951 to 75410039 88 - TSS region transcription start site region 90543
Tssr86172 9 75410145 to 75410176 31 + TSS region transcription start site region 86172
4933433G15Rik 9 75410184 to 75415537 5353 + lincRNA gene RIKEN cDNA 4933433G15 gene
Tssr86173 9 75410203 to 75410217 14 + TSS region transcription start site region 86173
Tssr2942 9 75410209 to 75410220 11 - TSS region transcription start site region 2942
Tssr90544 9 75422401 to 75422445 44 - TSS region transcription start site region 90544
Tssr86174 9 75434343 to 75434354 11 + TSS region transcription start site region 86174
Tssr86175 9 75434437 to 75434442 5 + TSS region transcription start site region 86175
Tssr86176 9 75438125 to 75438130 5 + TSS region transcription start site region 86176
Cpgi22046 9 75441188 to 75442148 960 CpG island CpG island 22046
Tssr86177 9 75441478 to 75441489 11 + TSS region transcription start site region 86177
Tssr86178 9 75441518 to 75441575 57 + TSS region transcription start site region 86178
Leo1 9 75441524 to 75466432 24908 + protein coding gene Leo1, Paf1/RNA polymerase II complex component
Tssr86179 9 75468559 to 75468585 26 + TSS region transcription start site region 86179
Tssr86180 9 75468589 to 75468597 8 + TSS region transcription start site region 86180
Gm7972 9 75468616 to 75486681 18065 + pseudogene predicted gene 7972
Tmod3 9 75497784 to 75559687 61903 - protein coding gene tropomodulin 3
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
D9Mit262 9 75501755 to 75501893 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 262
Gm48789 9 75520374 to 75520502 128 - pseudogene predicted gene, 48789
Tssr2943 9 75538250 to 75538254 4 + TSS region transcription start site region 2943
Tssr90545 9 75541693 to 75541721 28 - TSS region transcription start site region 90545