Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:74886015-76085310

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209 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20649 9 74848463 to 74891476 43013 + lincRNA gene predicted gene 20649
Onecut1 9 74861921 to 74889648 27727 + protein coding gene one cut domain, family member 1
Cpgi22036 9 74909464 to 74909645 181 CpG island CpG island 22036
Tssr90521 9 74910440 to 74910446 6 - TSS region transcription start site region 90521
Tssr90522 9 74927541 to 74927542 1 - TSS region transcription start site region 90522
D9Mit1008 9 74950830 to 74950972 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1008
Cpgi22037 9 74952484 to 74953583 1099 CpG island CpG island 22037
Tssr86114 9 74952852 to 74952935 83 + TSS region transcription start site region 86114
Fam214a 9 74952884 to 75032468 79584 + protein coding gene family with sequence similarity 214, member A
Tssr86115 9 74953074 to 74953091 17 + TSS region transcription start site region 86115
Tssr86116 9 74953156 to 74953209 53 + TSS region transcription start site region 86116
Tssr86117 9 74953561 to 74953575 14 + TSS region transcription start site region 86117
Cpgi22038 9 74975997 to 74976338 341 CpG island CpG island 22038
Tssr86118 9 74976096 to 74976177 81 + TSS region transcription start site region 86118
Tssr86119 9 75004361 to 75004374 13 + TSS region transcription start site region 86119
Tssr86120 9 75011825 to 75011830 5 + TSS region transcription start site region 86120
Cpgi22039 9 75037488 to 75038457 969 CpG island CpG island 22039
Arpp19 9 75037614 to 75060313 22699 + protein coding gene cAMP-regulated phosphoprotein 19
Tssr86121 9 75037656 to 75037701 45 + TSS region transcription start site region 86121
Tssr86122 9 75037712 to 75037737 25 + TSS region transcription start site region 86122
Tssr86123 9 75037744 to 75037755 11 + TSS region transcription start site region 86123
Tssr86124 9 75037797 to 75037806 9 + TSS region transcription start site region 86124
Tssr86125 9 75037809 to 75037820 11 + TSS region transcription start site region 86125
Tssr86126 9 75037838 to 75037852 14 + TSS region transcription start site region 86126
Tssr90523 9 75038470 to 75038474 4 - TSS region transcription start site region 90523
Tssr90524 9 75038628 to 75038677 49 - TSS region transcription start site region 90524
Tssr86127 9 75052073 to 75052082 9 + TSS region transcription start site region 86127
Tssr86128 9 75052083 to 75052090 7 + TSS region transcription start site region 86128
Tssr86129 9 75052091 to 75052136 45 + TSS region transcription start site region 86129
Tssr86130 9 75052142 to 75052153 11 + TSS region transcription start site region 86130
Tssr90525 9 75052258 to 75052288 30 - TSS region transcription start site region 90525
Gm2981 9 75061354 to 75062047 693 - pseudogene predicted gene 2981
4930504B08Rik 9 75070389 to 75071153 764 unclassified gene RIKEN cDNA 4930504B08 gene
Cpgi22040 9 75070594 to 75072128 1534 CpG island CpG island 22040
Myo5a 9 75071015 to 75223688 152673 + protein coding gene myosin VA
l9Rl1 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 1
l9Rl2 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 2
l9Rl3 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 3
l9Rl4 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 4
l9Rl5 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 5
l9Rl6 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 6
l9Rl7 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 7
l9Rl8 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 8
Tssr90526 9 75071123 to 75071142 19 - TSS region transcription start site region 90526
Tssr86131 9 75071148 to 75071228 80 + TSS region transcription start site region 86131
Tssr86132 9 75071276 to 75071321 45 + TSS region transcription start site region 86132
Tssr86133 9 75071397 to 75071418 21 + TSS region transcription start site region 86133
Tssr90527 9 75071424 to 75071447 23 - TSS region transcription start site region 90527
Tssr86134 9 75071527 to 75071569 42 + TSS region transcription start site region 86134
Tssr86135 9 75071579 to 75071584 5 + TSS region transcription start site region 86135
Tssr90528 9 75072481 to 75072517 36 - TSS region transcription start site region 90528
Tssr86136 9 75081137 to 75081139 2 + TSS region transcription start site region 86136
Gm9719 9 75098598 to 75099140 542 - pseudogene predicted gene 9719
Tssr90529 9 75099172 to 75099176 4 - TSS region transcription start site region 90529
n-TAagc4 9 75108930 to 75109012 82 - tRNA gene nuclear encoded tRNA alanine 4 (anticodon AGC)
Gm16353 9 75133408 to 75134141 733 - pseudogene predicted gene 16353
Tssr86137 9 75134153 to 75134193 40 + TSS region transcription start site region 86137
Tssr90530 9 75160674 to 75160710 36 - TSS region transcription start site region 90530
Tssr86138 9 75166312 to 75166351 39 + TSS region transcription start site region 86138
Tssr86139 9 75167225 to 75167238 13 + TSS region transcription start site region 86139
Tssr86140 9 75173993 to 75174004 11 + TSS region transcription start site region 86140
Tssr86141 9 75174061 to 75174072 11 + TSS region transcription start site region 86141
Tssr86142 9 75174079 to 75174096 17 + TSS region transcription start site region 86142
Tssr86143 9 75177672 to 75177692 20 + TSS region transcription start site region 86143
Tssr86144 9 75184176 to 75184196 20 + TSS region transcription start site region 86144
Tssr86145 9 75184274 to 75184285 11 + TSS region transcription start site region 86145
Tssr86146 9 75184347 to 75184402 55 + TSS region transcription start site region 86146
Tssr86147 9 75186038 to 75186054 16 + TSS region transcription start site region 86147
Tssr86148 9 75186057 to 75186073 16 + TSS region transcription start site region 86148
Tssr86149 9 75190235 to 75190248 13 + TSS region transcription start site region 86149
Tssr86150 9 75193297 to 75193311 14 + TSS region transcription start site region 86150
Tssr86151 9 75193386 to 75193404 18 + TSS region transcription start site region 86151
Tssr86152 9 75211630 to 75211634 4 + TSS region transcription start site region 86152
Tssr2941 9 75217438 to 75217452 14 + TSS region transcription start site region 2941
Tssr86153 9 75217470 to 75217483 13 + TSS region transcription start site region 86153
Tssr86154 9 75221026 to 75221059 33 + TSS region transcription start site region 86154
Cpgi22041 9 75231946 to 75232441 495 CpG island CpG island 22041
Tssr86155 9 75232013 to 75232033 20 + TSS region transcription start site region 86155
Myo5c 9 75232020 to 75305451 73431 + protein coding gene myosin VC
Tssr86156 9 75232050 to 75232084 34 + TSS region transcription start site region 86156
Gm33750 9 75235400 to 75237754 2354 - lncRNA gene predicted gene, 33750
Tssr90531 9 75254756 to 75254772 16 - TSS region transcription start site region 90531
Gnb5 9 75306288 to 75345876 39588 + protein coding gene guanine nucleotide binding protein (G protein), beta 5
Tssr86157 9 75306290 to 75306339 49 + TSS region transcription start site region 86157
A930005C09Rik 9 75306333 to 75307489 1156 unclassified gene RIKEN cDNA A930005C09 gene
Gm19531 9 75310335 to 75314871 4536 - antisense lncRNA gene predicted gene, 19531
Cpgi22042 9 75313764 to 75314818 1054 CpG island CpG island 22042
Tssr86158 9 75314133 to 75314210 77 + TSS region transcription start site region 86158
Tssr86159 9 75314211 to 75314233 22 + TSS region transcription start site region 86159
Tssr86160 9 75314235 to 75314265 30 + TSS region transcription start site region 86160
Gm48677 9 75317072 to 75342842 25770 - antisense lncRNA gene predicted gene, 48677
Tssr86161 9 75337410 to 75337412 2 + TSS region transcription start site region 86161
Tssr86162 9 75338135 to 75338163 28 + TSS region transcription start site region 86162
Tssr86163 9 75338334 to 75338365 31 + TSS region transcription start site region 86163
Tssr86164 9 75345106 to 75345112 6 + TSS region transcription start site region 86164
Tssr86165 9 75347755 to 75347763 8 + TSS region transcription start site region 86165
Bcl2l10 9 75347758 to 75351632 3874 + protein coding gene Bcl2-like 10
Cpgi22043 9 75347870 to 75348212 342 CpG island CpG island 22043
Tssr86166 9 75347889 to 75347893 4 + TSS region transcription start site region 86166
D9Mit305.2 9 75355492 to 75355605 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 305.2
D9Mit305 9 75355600 to 75355681 81 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 305
Cpgi22044 9 75372022 to 75372288 266 CpG island CpG island 22044
Gm18015 9 75372784 to 75373099 315 - pseudogene predicted gene, 18015
Tssr90532 9 75373202 to 75373252 50 - TSS region transcription start site region 90532
Gm5366 9 75374611 to 75375948 1337 - pseudogene predicted gene 5366
Tssr90533 9 75375958 to 75375981 23 - TSS region transcription start site region 90533
Mapk6 9 75386782 to 75410019 23237 - protein coding gene mitogen-activated protein kinase 6
Tssr90534 9 75387226 to 75387247 21 - TSS region transcription start site region 90534
Tssr90535 9 75387468 to 75387489 21 - TSS region transcription start site region 90535
Tssr90536 9 75387887 to 75387898 11 - TSS region transcription start site region 90536
Tssr90537 9 75387959 to 75387973 14 - TSS region transcription start site region 90537
Tssr90538 9 75387990 to 75388001 11 - TSS region transcription start site region 90538
Tssr86167 9 75407018 to 75407028 10 + TSS region transcription start site region 86167
Tssr90539 9 75407903 to 75407907 4 - TSS region transcription start site region 90539
Tssr86168 9 75408054 to 75408079 25 + TSS region transcription start site region 86168
Tssr86169 9 75408086 to 75408099 13 + TSS region transcription start site region 86169
Tssr86170 9 75408115 to 75408124 9 + TSS region transcription start site region 86170
Tssr86171 9 75408324 to 75408328 4 + TSS region transcription start site region 86171
Cpgi22045 9 75408939 to 75410517 1578 CpG island CpG island 22045
Tssr90540 9 75409282 to 75409336 54 - TSS region transcription start site region 90540
Tssr90541 9 75409352 to 75409383 31 - TSS region transcription start site region 90541
Tssr90542 9 75409591 to 75409643 52 - TSS region transcription start site region 90542
Tssr90543 9 75409951 to 75410039 88 - TSS region transcription start site region 90543
Tssr86172 9 75410145 to 75410176 31 + TSS region transcription start site region 86172
4933433G15Rik 9 75410184 to 75415537 5353 + lincRNA gene RIKEN cDNA 4933433G15 gene
Tssr86173 9 75410203 to 75410217 14 + TSS region transcription start site region 86173
Tssr2942 9 75410209 to 75410220 11 - TSS region transcription start site region 2942
Tssr90544 9 75422401 to 75422445 44 - TSS region transcription start site region 90544
Tssr86174 9 75434343 to 75434354 11 + TSS region transcription start site region 86174
Tssr86175 9 75434437 to 75434442 5 + TSS region transcription start site region 86175
Tssr86176 9 75438125 to 75438130 5 + TSS region transcription start site region 86176
Cpgi22046 9 75441188 to 75442148 960 CpG island CpG island 22046
Tssr86177 9 75441478 to 75441489 11 + TSS region transcription start site region 86177
Tssr86178 9 75441518 to 75441575 57 + TSS region transcription start site region 86178
Leo1 9 75441524 to 75466432 24908 + protein coding gene Leo1, Paf1/RNA polymerase II complex component
Tssr86179 9 75468559 to 75468585 26 + TSS region transcription start site region 86179
Tssr86180 9 75468589 to 75468597 8 + TSS region transcription start site region 86180
Gm7972 9 75468616 to 75486681 18065 + pseudogene predicted gene 7972
Tmod3 9 75497784 to 75559687 61903 - protein coding gene tropomodulin 3
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
D9Mit262 9 75501755 to 75501893 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 262
Gm48789 9 75520374 to 75520502 128 - pseudogene predicted gene, 48789
Tssr2943 9 75538250 to 75538254 4 + TSS region transcription start site region 2943
Tssr90545 9 75541693 to 75541721 28 - TSS region transcription start site region 90545
Cpgi22047 9 75558989 to 75559843 854 CpG island CpG island 22047
Tssr90546 9 75559583 to 75559594 11 - TSS region transcription start site region 90546
Tssr90547 9 75559604 to 75559665 61 - TSS region transcription start site region 90547
Tmod2 9 75565621 to 75611325 45704 - protein coding gene tropomodulin 2
Tssr90548 9 75566726 to 75566731 5 - TSS region transcription start site region 90548
Tssr90549 9 75567321 to 75567354 33 - TSS region transcription start site region 90549
Tssr90550 9 75567488 to 75567502 14 - TSS region transcription start site region 90550
Tssr90551 9 75572800 to 75572804 4 - TSS region transcription start site region 90551
Gm48822 9 75582739 to 75585109 2370 - unclassified gene predicted gene, 48822
Tssr90552 9 75597643 to 75597656 13 - TSS region transcription start site region 90552
Tssr90553 9 75597674 to 75597712 38 - TSS region transcription start site region 90553
Tssr90554 9 75597717 to 75597738 21 - TSS region transcription start site region 90554
Tssr90555 9 75599089 to 75599104 15 - TSS region transcription start site region 90555
Tssr90556 9 75599108 to 75599118 10 - TSS region transcription start site region 90556
Tssr90557 9 75599124 to 75599141 17 - TSS region transcription start site region 90557
Cpgi22048 9 75610550 to 75611683 1133 CpG island CpG island 22048
Tssr90558 9 75611076 to 75611102 26 - TSS region transcription start site region 90558
Tssr90559 9 75611104 to 75611182 78 - TSS region transcription start site region 90559
Tssr90560 9 75611216 to 75611223 7 - TSS region transcription start site region 90560
Tssr90561 9 75611278 to 75611295 17 - TSS region transcription start site region 90561
Tssr90562 9 75611308 to 75611334 26 - TSS region transcription start site region 90562
Tssr90563 9 75611340 to 75611359 19 - TSS region transcription start site region 90563
D9Mit235 9 75621814 to 75621923 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 235
Cpgi22049 9 75624978 to 75626531 1553 CpG island CpG island 22049
Tssr86181 9 75625399 to 75625420 21 + TSS region transcription start site region 86181
Tssr86182 9 75625707 to 75625770 63 + TSS region transcription start site region 86182
Lysmd2 9 75625741 to 75637771 12030 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 2
Tssr86183 9 75625842 to 75625885 43 + TSS region transcription start site region 86183
Tssr86184 9 75625967 to 75625981 14 + TSS region transcription start site region 86184
Tssr86185 9 75626136 to 75626179 43 + TSS region transcription start site region 86185
D9Dcr12 9 75640183 to 75640293 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 12
D9Mit263 9 75640192 to 75640288 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 263
Tssr90564 9 75642111 to 75642123 12 - TSS region transcription start site region 90564
Tssr90565 9 75642244 to 75642259 15 - TSS region transcription start site region 90565
Tssr90566 9 75642310 to 75642326 16 - TSS region transcription start site region 90566
Scg3 9 75643189 to 75684056 40867 - protein coding gene secretogranin III
Tssr90567 9 75643221 to 75643237 16 - TSS region transcription start site region 90567
Gm37871 9 75666652 to 75667339 687 + unclassified gene predicted gene, 37871
Tssr90568 9 75683349 to 75683357 8 - TSS region transcription start site region 90568
Cpgi22050 9 75683640 to 75684317 677 CpG island CpG island 22050
Tssr90569 9 75683847 to 75683855 8 - TSS region transcription start site region 90569
Tssr90570 9 75683909 to 75683914 5 - TSS region transcription start site region 90570
Tssr90571 9 75683971 to 75683989 18 - TSS region transcription start site region 90571
Tssr90572 9 75683992 to 75684046 54 - TSS region transcription start site region 90572
Tssr90573 9 75684074 to 75684083 9 - TSS region transcription start site region 90573
Gm3671 9 75693653 to 75694659 1006 - pseudogene predicted gene 3671
Gm39373 9 75763525 to 75769160 5635 + lncRNA gene predicted gene, 39373
Tssr86186 9 75775355 to 75775378 23 + TSS region transcription start site region 86186
Bmp5 9 75775364 to 75900310 124946 + protein coding gene bone morphogenetic protein 5
In(9Bmp5-Myo6)5Rl 9 75775364 to 80311729 4536365 chromosomal inversion inversion, Chr 9, Russell 5
Tssr86187 9 75775668 to 75775687 19 + TSS region transcription start site region 86187
Tssr86188 9 75775694 to 75775715 21 + TSS region transcription start site region 86188
Gm47723 9 75876260 to 75877713 1453 + unclassified gene predicted gene, 47723
Gm26903 9 75897843 to 76015192 117349 - antisense lncRNA gene predicted gene, 26903
Gm44355 9 75911422 to 75911525 103 + miRNA gene predicted gene, 44355
Gm34005 9 75964204 to 75964485 281 + pseudogene predicted gene, 34005