Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:74683408-75584141

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ath29 9 40508298 to 74700643 34192345 QTL atherosclerosis 29
D9Mit156 9 74700509 to 74700643 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 156
Gm40533 9 74703757 to 74711482 7725 - lncRNA gene predicted gene, 40533
Gm27233 9 74709262 to 74709568 306 + pseudogene predicted gene 27233
Gm39372 9 74712308 to 74723757 11449 - lncRNA gene predicted gene, 39372
Tssr2938 9 74714289 to 74714292 3 + TSS region transcription start site region 2938
Tssr2939 9 74739398 to 74739399 1 + TSS region transcription start site region 2939
Gm22315 9 74782070 to 74782212 142 + snoRNA gene predicted gene, 22315
Gm33562 9 74792582 to 74863136 70554 - lncRNA gene predicted gene, 33562
Cpgi22030 9 74846909 to 74847305 396 CpG island CpG island 22030
Cpgi22031 9 74848327 to 74849728 1401 CpG island CpG island 22031
Gm16551 9 74848437 to 74852872 4435 + lncRNA gene predicted gene 16551
Gm20649 9 74848463 to 74891476 43013 + lincRNA gene predicted gene 20649
Tssr86106 9 74848467 to 74848531 64 + TSS region transcription start site region 86106
Tssr86107 9 74848732 to 74848735 3 + TSS region transcription start site region 86107
Gm28182 9 74852909 to 74855385 2476 - lincRNA gene predicted gene 28182
Cpgi22032 9 74853729 to 74854105 376 CpG island CpG island 22032
Cpgi22033 9 74857185 to 74857511 326 CpG island CpG island 22033
Cpgi22034 9 74861215 to 74864008 2793 CpG island CpG island 22034
Tssr86108 9 74861857 to 74861864 7 + TSS region transcription start site region 86108
Tssr86109 9 74861875 to 74861884 9 + TSS region transcription start site region 86109
Tssr86110 9 74861888 to 74861915 27 + TSS region transcription start site region 86110
Onecut1 9 74861921 to 74889648 27727 + protein coding gene one cut domain, family member 1
Tssr2940 9 74861936 to 74861937 1 + TSS region transcription start site region 2940
Tssr90520 9 74863395 to 74863436 41 - TSS region transcription start site region 90520
Gm38678 9 74863408 to 74871744 8336 + lncRNA gene predicted gene, 38678
Tssr86111 9 74865635 to 74865653 18 + TSS region transcription start site region 86111
Tssr86112 9 74866474 to 74866489 15 + TSS region transcription start site region 86112
Tssr86113 9 74866496 to 74866511 15 + TSS region transcription start site region 86113
Cpgi22035 9 74866956 to 74867211 255 CpG island CpG island 22035
Cpgi22036 9 74909464 to 74909645 181 CpG island CpG island 22036
Tssr90521 9 74910440 to 74910446 6 - TSS region transcription start site region 90521
Tssr90522 9 74927541 to 74927542 1 - TSS region transcription start site region 90522
D9Mit1008 9 74950830 to 74950972 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1008
Cpgi22037 9 74952484 to 74953583 1099 CpG island CpG island 22037
Tssr86114 9 74952852 to 74952935 83 + TSS region transcription start site region 86114
Fam214a 9 74952884 to 75032468 79584 + protein coding gene family with sequence similarity 214, member A
Tssr86115 9 74953074 to 74953091 17 + TSS region transcription start site region 86115
Tssr86116 9 74953156 to 74953209 53 + TSS region transcription start site region 86116
Tssr86117 9 74953561 to 74953575 14 + TSS region transcription start site region 86117
Cpgi22038 9 74975997 to 74976338 341 CpG island CpG island 22038
Tssr86118 9 74976096 to 74976177 81 + TSS region transcription start site region 86118
Tssr86119 9 75004361 to 75004374 13 + TSS region transcription start site region 86119
Tssr86120 9 75011825 to 75011830 5 + TSS region transcription start site region 86120
Cpgi22039 9 75037488 to 75038457 969 CpG island CpG island 22039
Arpp19 9 75037614 to 75060313 22699 + protein coding gene cAMP-regulated phosphoprotein 19
Tssr86121 9 75037656 to 75037701 45 + TSS region transcription start site region 86121
Tssr86122 9 75037712 to 75037737 25 + TSS region transcription start site region 86122
Tssr86123 9 75037744 to 75037755 11 + TSS region transcription start site region 86123
Tssr86124 9 75037797 to 75037806 9 + TSS region transcription start site region 86124
Tssr86125 9 75037809 to 75037820 11 + TSS region transcription start site region 86125
Tssr86126 9 75037838 to 75037852 14 + TSS region transcription start site region 86126
Tssr90523 9 75038470 to 75038474 4 - TSS region transcription start site region 90523
Tssr90524 9 75038628 to 75038677 49 - TSS region transcription start site region 90524
Tssr86127 9 75052073 to 75052082 9 + TSS region transcription start site region 86127
Tssr86128 9 75052083 to 75052090 7 + TSS region transcription start site region 86128
Tssr86129 9 75052091 to 75052136 45 + TSS region transcription start site region 86129
Tssr86130 9 75052142 to 75052153 11 + TSS region transcription start site region 86130
Tssr90525 9 75052258 to 75052288 30 - TSS region transcription start site region 90525
Gm2981 9 75061354 to 75062047 693 - pseudogene predicted gene 2981
4930504B08Rik 9 75070389 to 75071153 764 unclassified gene RIKEN cDNA 4930504B08 gene
Cpgi22040 9 75070594 to 75072128 1534 CpG island CpG island 22040
Myo5a 9 75071015 to 75223688 152673 + protein coding gene myosin VA
l9Rl5 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 5
l9Rl6 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 6
l9Rl7 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 7
l9Rl8 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 8
l9Rl3 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 3
l9Rl4 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 4
l9Rl2 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 2
l9Rl1 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 1
Tssr90526 9 75071123 to 75071142 19 - TSS region transcription start site region 90526
Tssr86131 9 75071148 to 75071228 80 + TSS region transcription start site region 86131
Tssr86132 9 75071276 to 75071321 45 + TSS region transcription start site region 86132
Tssr86133 9 75071397 to 75071418 21 + TSS region transcription start site region 86133
Tssr90527 9 75071424 to 75071447 23 - TSS region transcription start site region 90527
Tssr86134 9 75071527 to 75071569 42 + TSS region transcription start site region 86134
Tssr86135 9 75071579 to 75071584 5 + TSS region transcription start site region 86135
Tssr90528 9 75072481 to 75072517 36 - TSS region transcription start site region 90528
Tssr86136 9 75081137 to 75081139 2 + TSS region transcription start site region 86136
Gm9719 9 75098598 to 75099140 542 - pseudogene predicted gene 9719
Tssr90529 9 75099172 to 75099176 4 - TSS region transcription start site region 90529
n-TAagc4 9 75108930 to 75109012 82 - tRNA gene nuclear encoded tRNA alanine 4 (anticodon AGC)
Gm16353 9 75133408 to 75134141 733 - pseudogene predicted gene 16353
Tssr86137 9 75134153 to 75134193 40 + TSS region transcription start site region 86137
Tssr90530 9 75160674 to 75160710 36 - TSS region transcription start site region 90530
Tssr86138 9 75166312 to 75166351 39 + TSS region transcription start site region 86138
Tssr86139 9 75167225 to 75167238 13 + TSS region transcription start site region 86139
Tssr86140 9 75173993 to 75174004 11 + TSS region transcription start site region 86140
Tssr86141 9 75174061 to 75174072 11 + TSS region transcription start site region 86141
Tssr86142 9 75174079 to 75174096 17 + TSS region transcription start site region 86142
Tssr86143 9 75177672 to 75177692 20 + TSS region transcription start site region 86143
Tssr86144 9 75184176 to 75184196 20 + TSS region transcription start site region 86144
Tssr86145 9 75184274 to 75184285 11 + TSS region transcription start site region 86145
Tssr86146 9 75184347 to 75184402 55 + TSS region transcription start site region 86146
Tssr86147 9 75186038 to 75186054 16 + TSS region transcription start site region 86147
Tssr86148 9 75186057 to 75186073 16 + TSS region transcription start site region 86148
Tssr86149 9 75190235 to 75190248 13 + TSS region transcription start site region 86149
Tssr86150 9 75193297 to 75193311 14 + TSS region transcription start site region 86150
Tssr86151 9 75193386 to 75193404 18 + TSS region transcription start site region 86151
Tssr86152 9 75211630 to 75211634 4 + TSS region transcription start site region 86152
Tssr2941 9 75217438 to 75217452 14 + TSS region transcription start site region 2941
Tssr86153 9 75217470 to 75217483 13 + TSS region transcription start site region 86153
Tssr86154 9 75221026 to 75221059 33 + TSS region transcription start site region 86154
Cpgi22041 9 75231946 to 75232441 495 CpG island CpG island 22041
Tssr86155 9 75232013 to 75232033 20 + TSS region transcription start site region 86155
Myo5c 9 75232020 to 75305451 73431 + protein coding gene myosin VC
Tssr86156 9 75232050 to 75232084 34 + TSS region transcription start site region 86156
Gm33750 9 75235400 to 75237754 2354 - lncRNA gene predicted gene, 33750
Tssr90531 9 75254756 to 75254772 16 - TSS region transcription start site region 90531
Gnb5 9 75306288 to 75345876 39588 + protein coding gene guanine nucleotide binding protein (G protein), beta 5
Tssr86157 9 75306290 to 75306339 49 + TSS region transcription start site region 86157
A930005C09Rik 9 75306333 to 75307489 1156 unclassified gene RIKEN cDNA A930005C09 gene
Gm19531 9 75310335 to 75314871 4536 - antisense lncRNA gene predicted gene, 19531
Cpgi22042 9 75313764 to 75314818 1054 CpG island CpG island 22042
Tssr86158 9 75314133 to 75314210 77 + TSS region transcription start site region 86158
Tssr86159 9 75314211 to 75314233 22 + TSS region transcription start site region 86159
Tssr86160 9 75314235 to 75314265 30 + TSS region transcription start site region 86160
Gm48677 9 75317072 to 75342842 25770 - antisense lncRNA gene predicted gene, 48677
Tssr86161 9 75337410 to 75337412 2 + TSS region transcription start site region 86161
Tssr86162 9 75338135 to 75338163 28 + TSS region transcription start site region 86162
Tssr86163 9 75338334 to 75338365 31 + TSS region transcription start site region 86163
Tssr86164 9 75345106 to 75345112 6 + TSS region transcription start site region 86164
Tssr86165 9 75347755 to 75347763 8 + TSS region transcription start site region 86165
Bcl2l10 9 75347758 to 75351632 3874 + protein coding gene Bcl2-like 10
Cpgi22043 9 75347870 to 75348212 342 CpG island CpG island 22043
Tssr86166 9 75347889 to 75347893 4 + TSS region transcription start site region 86166
D9Mit305.2 9 75355492 to 75355605 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 305.2
D9Mit305 9 75355600 to 75355681 81 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 305
Cpgi22044 9 75372022 to 75372288 266 CpG island CpG island 22044
Gm18015 9 75372784 to 75373099 315 - pseudogene predicted gene, 18015
Tssr90532 9 75373202 to 75373252 50 - TSS region transcription start site region 90532
Gm5366 9 75374611 to 75375948 1337 - pseudogene predicted gene 5366
Tssr90533 9 75375958 to 75375981 23 - TSS region transcription start site region 90533
Mapk6 9 75386782 to 75410019 23237 - protein coding gene mitogen-activated protein kinase 6
Tssr90534 9 75387226 to 75387247 21 - TSS region transcription start site region 90534
Tssr90535 9 75387468 to 75387489 21 - TSS region transcription start site region 90535
Tssr90536 9 75387887 to 75387898 11 - TSS region transcription start site region 90536
Tssr90537 9 75387959 to 75387973 14 - TSS region transcription start site region 90537
Tssr90538 9 75387990 to 75388001 11 - TSS region transcription start site region 90538
Tssr86167 9 75407018 to 75407028 10 + TSS region transcription start site region 86167
Tssr90539 9 75407903 to 75407907 4 - TSS region transcription start site region 90539
Tssr86168 9 75408054 to 75408079 25 + TSS region transcription start site region 86168
Tssr86169 9 75408086 to 75408099 13 + TSS region transcription start site region 86169
Tssr86170 9 75408115 to 75408124 9 + TSS region transcription start site region 86170
Tssr86171 9 75408324 to 75408328 4 + TSS region transcription start site region 86171
Cpgi22045 9 75408939 to 75410517 1578 CpG island CpG island 22045
Tssr90540 9 75409282 to 75409336 54 - TSS region transcription start site region 90540
Tssr90541 9 75409352 to 75409383 31 - TSS region transcription start site region 90541
Tssr90542 9 75409591 to 75409643 52 - TSS region transcription start site region 90542
Tssr90543 9 75409951 to 75410039 88 - TSS region transcription start site region 90543
Tssr86172 9 75410145 to 75410176 31 + TSS region transcription start site region 86172
4933433G15Rik 9 75410184 to 75415537 5353 + lincRNA gene RIKEN cDNA 4933433G15 gene
Tssr86173 9 75410203 to 75410217 14 + TSS region transcription start site region 86173
Tssr2942 9 75410209 to 75410220 11 - TSS region transcription start site region 2942
Tssr90544 9 75422401 to 75422445 44 - TSS region transcription start site region 90544
Tssr86174 9 75434343 to 75434354 11 + TSS region transcription start site region 86174
Tssr86175 9 75434437 to 75434442 5 + TSS region transcription start site region 86175
Tssr86176 9 75438125 to 75438130 5 + TSS region transcription start site region 86176
Cpgi22046 9 75441188 to 75442148 960 CpG island CpG island 22046
Tssr86177 9 75441478 to 75441489 11 + TSS region transcription start site region 86177
Tssr86178 9 75441518 to 75441575 57 + TSS region transcription start site region 86178
Leo1 9 75441524 to 75466432 24908 + protein coding gene Leo1, Paf1/RNA polymerase II complex component
Tssr86179 9 75468559 to 75468585 26 + TSS region transcription start site region 86179
Tssr86180 9 75468589 to 75468597 8 + TSS region transcription start site region 86180
Gm7972 9 75468616 to 75486681 18065 + pseudogene predicted gene 7972
Tmod3 9 75497784 to 75559687 61903 - protein coding gene tropomodulin 3
D9Mit262 9 75501755 to 75501893 138 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 262
Ksc1 9 75501755 to 80091050 4589295 QTL keratinocyte stem cell locus 1
Gm48789 9 75520374 to 75520502 128 - pseudogene predicted gene, 48789
Tssr2943 9 75538250 to 75538254 4 + TSS region transcription start site region 2943
Tssr90545 9 75541693 to 75541721 28 - TSS region transcription start site region 90545
Cpgi22047 9 75558989 to 75559843 854 CpG island CpG island 22047
Tssr90546 9 75559583 to 75559594 11 - TSS region transcription start site region 90546
Tssr90547 9 75559604 to 75559665 61 - TSS region transcription start site region 90547
Tmod2 9 75565621 to 75611325 45704 - protein coding gene tropomodulin 2
Tssr90548 9 75566726 to 75566731 5 - TSS region transcription start site region 90548
Tssr90549 9 75567321 to 75567354 33 - TSS region transcription start site region 90549
Tssr90550 9 75567488 to 75567502 14 - TSS region transcription start site region 90550
Tssr90551 9 75572800 to 75572804 4 - TSS region transcription start site region 90551
Gm48822 9 75582739 to 75585109 2370 - unclassified gene predicted gene, 48822