Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:7444635-8564644

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp3 9 7445822 to 7455975 10153 + protein coding gene matrix metallopeptidase 3
Tssr83742 9 7445837 to 7445855 18 + TSS region transcription start site region 83742
Tssr83743 9 7464139 to 7464145 6 + TSS region transcription start site region 83743
Mmp1a 9 7464141 to 7476869 12728 + polymorphic pseudogene matrix metallopeptidase 1a (interstitial collagenase)
Tssr83744 9 7502340 to 7502345 5 + TSS region transcription start site region 83744
Mmp10 9 7502352 to 7510240 7888 + protein coding gene matrix metallopeptidase 10
Tssr88075 9 7556270 to 7556278 8 - TSS region transcription start site region 88075
Tssr2760 9 7558239 to 7558246 7 - TSS region transcription start site region 2760
Tssr83745 9 7558448 to 7558465 17 + TSS region transcription start site region 83745
Mmp8 9 7558456 to 7568485 10029 + protein coding gene matrix metallopeptidase 8
Gm31751 9 7558535 to 7622658 64123 - lncRNA gene predicted gene, 31751
Tssr83746 9 7560610 to 7560621 11 + TSS region transcription start site region 83746
Tssr83747 9 7561645 to 7561656 11 + TSS region transcription start site region 83747
Tssr83748 9 7566197 to 7566198 1 + TSS region transcription start site region 83748
Tssr83749 9 7567756 to 7567771 15 + TSS region transcription start site region 83749
Mmp27 9 7571396 to 7581885 10489 + protein coding gene matrix metallopeptidase 27
Tssr83750 9 7571457 to 7571489 32 + TSS region transcription start site region 83750
Tssr88076 9 7572741 to 7572752 11 - TSS region transcription start site region 88076
Tssr88077 9 7593401 to 7593411 10 - TSS region transcription start site region 88077
Tssr88078 9 7593439 to 7593443 4 - TSS region transcription start site region 88078
Tssr83751 9 7593687 to 7593693 6 + TSS region transcription start site region 83751
Gm47616 9 7599494 to 7599640 146 + pseudogene predicted gene, 47616
Tssr88079 9 7604109 to 7604118 9 - TSS region transcription start site region 88079
Tssr88080 9 7604127 to 7604130 3 - TSS region transcription start site region 88080
Tssr88081 9 7604145 to 7604167 22 - TSS region transcription start site region 88081
Tssr88082 9 7604174 to 7604188 14 - TSS region transcription start site region 88082
Tssr83752 9 7628200 to 7628204 4 + TSS region transcription start site region 83752
Mmp20 9 7628231 to 7674968 46737 + protein coding gene matrix metallopeptidase 20 (enamelysin)
Tssr88083 9 7661364 to 7661367 3 - TSS region transcription start site region 88083
AV064505 9 7669429 to 7695631 26202 - antisense lncRNA gene expressed sequence AV064505
Gm19212 9 7688974 to 7689823 849 - pseudogene predicted gene, 19212
Tssr83753 9 7692086 to 7692103 17 + TSS region transcription start site region 83753
Mmp7 9 7692090 to 7699585 7495 + protein coding gene matrix metallopeptidase 7
Tssr83754 9 7692339 to 7692366 27 + TSS region transcription start site region 83754
D9Mit57 9 7694215 to 7694379 164 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 57
Tssr83755 9 7695261 to 7695274 13 + TSS region transcription start site region 83755
Tssr83756 9 7699504 to 7699515 11 + TSS region transcription start site region 83756
Tssr2761 9 7699912 to 7699915 3 + TSS region transcription start site region 2761
Cbx3-ps8 9 7723147 to 7723694 547 + pseudogene chromobox 3, pseudogene 8
Gm10709 9 7751725 to 7752204 479 + pseudogene predicted gene 10709
Cpgi21341 9 7763642 to 7764883 1241 CpG island CpG island 21341
Tssr88084 9 7763748 to 7763761 13 - TSS region transcription start site region 88084
Tssr88085 9 7763762 to 7763775 13 - TSS region transcription start site region 88085
Tssr83757 9 7764058 to 7764177 119 + TSS region transcription start site region 83757
Tmem123 9 7764077 to 7794333 30256 + protein coding gene transmembrane protein 123
Tssr83758 9 7764179 to 7764190 11 + TSS region transcription start site region 83758
Tssr83759 9 7764200 to 7764211 11 + TSS region transcription start site region 83759
Tssr88086 9 7764755 to 7764789 34 - TSS region transcription start site region 88086
Tssr83760 9 7767772 to 7767801 29 + TSS region transcription start site region 83760
Mir5618 9 7784390 to 7784440 50 + miRNA gene microRNA 5618
Tssr83761 9 7786796 to 7786803 7 + TSS region transcription start site region 83761
Tssr83762 9 7790974 to 7791023 49 + TSS region transcription start site region 83762
Tssr83763 9 7792679 to 7792695 16 + TSS region transcription start site region 83763
Tssr83764 9 7792717 to 7792739 22 + TSS region transcription start site region 83764
Tssr83765 9 7793297 to 7793312 15 + TSS region transcription start site region 83765
Birc2 9 7818227 to 7837064 18837 - protein coding gene baculoviral IAP repeat-containing 2
Cpgi21342 9 7836425 to 7837595 1170 CpG island CpG island 21342
Tssr88087 9 7836799 to 7836810 11 - TSS region transcription start site region 88087
Tssr88088 9 7836836 to 7836850 14 - TSS region transcription start site region 88088
Tssr88089 9 7836860 to 7836883 23 - TSS region transcription start site region 88089
Tssr88090 9 7836889 to 7836910 21 - TSS region transcription start site region 88090
Tssr88091 9 7836961 to 7836974 13 - TSS region transcription start site region 88091
Tssr88092 9 7836980 to 7837096 116 - TSS region transcription start site region 88092
Tssr83766 9 7837136 to 7837152 16 + TSS region transcription start site region 83766
Tssr83767 9 7837161 to 7837243 82 + TSS region transcription start site region 83767
Birc3 9 7848699 to 7873186 24487 - protein coding gene baculoviral IAP repeat-containing 3
Tssr88093 9 7850630 to 7850657 27 - TSS region transcription start site region 88093
Tssr88094 9 7864254 to 7864300 46 - TSS region transcription start site region 88094
Tssr88095 9 7864737 to 7864751 14 - TSS region transcription start site region 88095
Tssr88096 9 7865052 to 7865064 12 - TSS region transcription start site region 88096
Tssr88097 9 7867982 to 7867988 6 - TSS region transcription start site region 88097
Tssr88098 9 7868038 to 7868067 29 - TSS region transcription start site region 88098
Tssr88099 9 7868107 to 7868155 48 - TSS region transcription start site region 88099
Tssr83768 9 7868276 to 7868285 9 + TSS region transcription start site region 83768
Tssr83769 9 7869762 to 7869765 3 + TSS region transcription start site region 83769
Tssr83770 9 7870429 to 7870432 3 + TSS region transcription start site region 83770
Tssr83771 9 7870721 to 7870735 14 + TSS region transcription start site region 83771
Tssr83772 9 7870748 to 7870758 10 + TSS region transcription start site region 83772
Tssr83773 9 7870959 to 7870989 30 + TSS region transcription start site region 83773
Tssr88100 9 7871825 to 7871843 18 - TSS region transcription start site region 88100
Tssr83774 9 7871936 to 7871947 11 + TSS region transcription start site region 83774
Tssr83775 9 7871976 to 7871987 11 + TSS region transcription start site region 83775
Tssr83776 9 7871994 to 7872010 16 + TSS region transcription start site region 83776
Tssr88101 9 7872584 to 7872603 19 - TSS region transcription start site region 88101
Cpgi21343 9 7872671 to 7873022 351 CpG island CpG island 21343
Tssr88102 9 7872775 to 7872788 13 - TSS region transcription start site region 88102
Tssr88103 9 7872814 to 7872876 62 - TSS region transcription start site region 88103
Tssr88104 9 7872886 to 7872909 23 - TSS region transcription start site region 88104
Tssr88105 9 7872917 to 7872935 18 - TSS region transcription start site region 88105
Tssr88106 9 7872951 to 7872958 7 - TSS region transcription start site region 88106
Tssr83777 9 7872951 to 7872976 25 + TSS region transcription start site region 83777
Tssr88107 9 7872971 to 7872978 7 - TSS region transcription start site region 88107
Tssr88108 9 7872985 to 7873009 24 - TSS region transcription start site region 88108
Tssr88109 9 7873016 to 7873046 30 - TSS region transcription start site region 88109
Tssr83778 9 7873124 to 7873141 17 + TSS region transcription start site region 83778
Tssr83779 9 7873145 to 7873169 24 + TSS region transcription start site region 83779
Tssr88110 9 7873157 to 7873192 35 - TSS region transcription start site region 88110
Tssr83780 9 7873172 to 7873186 14 + TSS region transcription start site region 83780
Tssr83781 9 7873196 to 7873213 17 + TSS region transcription start site region 83781
Tssr83782 9 7873272 to 7873277 5 + TSS region transcription start site region 83782
Yap1 9 7931999 to 8004596 72597 - protein coding gene yes-associated protein 1
Tssr88111 9 7965811 to 7965820 9 - TSS region transcription start site region 88111
Gm20416 9 7965838 to 7977004 11166 + unclassified non-coding RNA gene predicted gene 20416
Tssr88112 9 7984115 to 7984121 6 - TSS region transcription start site region 88112
Tssr88113 9 7994815 to 7994819 4 - TSS region transcription start site region 88113
Cpgi21344 9 8003359 to 8005192 1833 CpG island CpG island 21344
Tssr88114 9 8004414 to 8004436 22 - TSS region transcription start site region 88114
Tssr88115 9 8004559 to 8004577 18 - TSS region transcription start site region 88115
Tssr88116 9 8004585 to 8004623 38 - TSS region transcription start site region 88116
Tssr88117 9 8004635 to 8004644 9 - TSS region transcription start site region 88117
Gm45494 9 8004830 to 8009269 4439 + bidirectional promoter lncRNA gene predicted gene 45494
Cfap300 9 8021672 to 8042823 21151 - protein coding gene cilia and flagella associated protein 300
Cpgi21345 9 8042432 to 8042913 481 CpG island CpG island 21345
Tssr88118 9 8042785 to 8042882 97 - TSS region transcription start site region 88118
Cep126 9 8076461 to 8134294 57833 - protein coding gene centrosomal protein 126
Tssr83783 9 8095701 to 8095703 2 + TSS region transcription start site region 83783
Gm2461 9 8104564 to 8106612 2048 protein coding gene predicted gene 2461
Cpgi21346 9 8133736 to 8134762 1026 CpG island CpG island 21346
Tssr88119 9 8134351 to 8134364 13 - TSS region transcription start site region 88119
Tssr88120 9 8134428 to 8134480 52 - TSS region transcription start site region 88120
Tssr83784 9 8134580 to 8134591 11 + TSS region transcription start site region 83784
Gm19324 9 8142541 to 8181112 38571 + pseudogene predicted gene, 19324
Gm7495 9 8153761 to 8154186 425 - pseudogene predicted gene 7495
1700128F08Rik 9 8221889 to 8241987 20098 + pseudogene RIKEN cDNA 1700128F08 gene
Mir1899 9 8246786 to 8246881 95 + miRNA gene microRNA 1899
D9Mit250 9 8393623 to 8393745 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 250
Gm47517 9 8476273 to 8476487 214 + pseudogene predicted gene, 47517
Cpgi21347 9 8543958 to 8544803 845 CpG island CpG island 21347
Trpc6 9 8544142 to 8680741 136599 + protein coding gene transient receptor potential cation channel, subfamily C, member 6
Tssr83785 9 8544199 to 8544225 26 + TSS region transcription start site region 83785
Tssr83786 9 8544227 to 8544258 31 + TSS region transcription start site region 83786
Tssr83787 9 8544500 to 8544532 32 + TSS region transcription start site region 83787
Gm10708 9 8555222 to 8555448 226 protein coding gene predicted gene 10708