Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:74340509-75060643

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ath29 9 40508298 to 74700643 34192345 QTL atherosclerosis 29
Tssr86104 9 74354082 to 74354084 2 + TSS region transcription start site region 86104
Tssr86105 9 74362610 to 74362612 2 + TSS region transcription start site region 86105
Gm24141 9 74362610 to 74362724 114 + snRNA gene predicted gene, 24141
Nr1h2-ps 9 74364601 to 74365017 416 - pseudogene nuclear receptor subfamily 1, group H, member 2, pseudogene
D9Mit342 9 74375338 to 74375462 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 342
Gm33459 9 74519696 to 74528686 8990 - lncRNA gene predicted gene, 33459
Tssr90518 9 74528605 to 74528616 11 - TSS region transcription start site region 90518
Tssr90519 9 74528652 to 74528668 16 - TSS region transcription start site region 90519
Gm28622 9 74560582 to 74561378 796 - lincRNA gene predicted gene 28622
Gm27189 9 74568238 to 74568427 189 + pseudogene predicted gene 27189
D9Mit318 9 74593626 to 74593744 118 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-318
D9Mit156 9 74700509 to 74700643 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 156
Gm40533 9 74703757 to 74711482 7725 - lncRNA gene predicted gene, 40533
Gm27233 9 74709262 to 74709568 306 + pseudogene predicted gene 27233
Gm39372 9 74712308 to 74723757 11449 - lncRNA gene predicted gene, 39372
Tssr2938 9 74714289 to 74714292 3 + TSS region transcription start site region 2938
Tssr2939 9 74739398 to 74739399 1 + TSS region transcription start site region 2939
Gm22315 9 74782070 to 74782212 142 + snoRNA gene predicted gene, 22315
Gm33562 9 74792582 to 74863136 70554 - lncRNA gene predicted gene, 33562
Cpgi22030 9 74846909 to 74847305 396 CpG island CpG island 22030
Cpgi22031 9 74848327 to 74849728 1401 CpG island CpG island 22031
Gm16551 9 74848437 to 74852872 4435 + lncRNA gene predicted gene 16551
Gm20649 9 74848463 to 74891476 43013 + lincRNA gene predicted gene 20649
Tssr86106 9 74848467 to 74848531 64 + TSS region transcription start site region 86106
Tssr86107 9 74848732 to 74848735 3 + TSS region transcription start site region 86107
Gm28182 9 74852909 to 74855385 2476 - lincRNA gene predicted gene 28182
Cpgi22032 9 74853729 to 74854105 376 CpG island CpG island 22032
Cpgi22033 9 74857185 to 74857511 326 CpG island CpG island 22033
Cpgi22034 9 74861215 to 74864008 2793 CpG island CpG island 22034
Tssr86108 9 74861857 to 74861864 7 + TSS region transcription start site region 86108
Tssr86109 9 74861875 to 74861884 9 + TSS region transcription start site region 86109
Tssr86110 9 74861888 to 74861915 27 + TSS region transcription start site region 86110
Onecut1 9 74861921 to 74889648 27727 + protein coding gene one cut domain, family member 1
Tssr2940 9 74861936 to 74861937 1 + TSS region transcription start site region 2940
Tssr90520 9 74863395 to 74863436 41 - TSS region transcription start site region 90520
Gm38678 9 74863408 to 74871744 8336 + lncRNA gene predicted gene, 38678
Tssr86111 9 74865635 to 74865653 18 + TSS region transcription start site region 86111
Tssr86112 9 74866474 to 74866489 15 + TSS region transcription start site region 86112
Tssr86113 9 74866496 to 74866511 15 + TSS region transcription start site region 86113
Cpgi22035 9 74866956 to 74867211 255 CpG island CpG island 22035
Cpgi22036 9 74909464 to 74909645 181 CpG island CpG island 22036
Tssr90521 9 74910440 to 74910446 6 - TSS region transcription start site region 90521
Tssr90522 9 74927541 to 74927542 1 - TSS region transcription start site region 90522
D9Mit1008 9 74950830 to 74950972 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1008
Cpgi22037 9 74952484 to 74953583 1099 CpG island CpG island 22037
Tssr86114 9 74952852 to 74952935 83 + TSS region transcription start site region 86114
Fam214a 9 74952884 to 75032468 79584 + protein coding gene family with sequence similarity 214, member A
Tssr86115 9 74953074 to 74953091 17 + TSS region transcription start site region 86115
Tssr86116 9 74953156 to 74953209 53 + TSS region transcription start site region 86116
Tssr86117 9 74953561 to 74953575 14 + TSS region transcription start site region 86117
Cpgi22038 9 74975997 to 74976338 341 CpG island CpG island 22038
Tssr86118 9 74976096 to 74976177 81 + TSS region transcription start site region 86118
Tssr86119 9 75004361 to 75004374 13 + TSS region transcription start site region 86119
Tssr86120 9 75011825 to 75011830 5 + TSS region transcription start site region 86120
Cpgi22039 9 75037488 to 75038457 969 CpG island CpG island 22039
Arpp19 9 75037614 to 75060313 22699 + protein coding gene cAMP-regulated phosphoprotein 19
Tssr86121 9 75037656 to 75037701 45 + TSS region transcription start site region 86121
Tssr86122 9 75037712 to 75037737 25 + TSS region transcription start site region 86122
Tssr86123 9 75037744 to 75037755 11 + TSS region transcription start site region 86123
Tssr86124 9 75037797 to 75037806 9 + TSS region transcription start site region 86124
Tssr86125 9 75037809 to 75037820 11 + TSS region transcription start site region 86125
Tssr86126 9 75037838 to 75037852 14 + TSS region transcription start site region 86126
Tssr90523 9 75038470 to 75038474 4 - TSS region transcription start site region 90523
Tssr90524 9 75038628 to 75038677 49 - TSS region transcription start site region 90524
Tssr86127 9 75052073 to 75052082 9 + TSS region transcription start site region 86127
Tssr86128 9 75052083 to 75052090 7 + TSS region transcription start site region 86128
Tssr86129 9 75052091 to 75052136 45 + TSS region transcription start site region 86129
Tssr86130 9 75052142 to 75052153 11 + TSS region transcription start site region 86130
Tssr90525 9 75052258 to 75052288 30 - TSS region transcription start site region 90525