Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:7354174-7854188

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp12 9 7344397 to 7360461 16064 + protein coding gene matrix metallopeptidase 12
Tssr83727 9 7354710 to 7354798 88 + TSS region transcription start site region 83727
Tssr88070 9 7354751 to 7354778 27 - TSS region transcription start site region 88070
Tssr83728 9 7354802 to 7354823 21 + TSS region transcription start site region 83728
Tssr83729 9 7354824 to 7354832 8 + TSS region transcription start site region 83729
Tssr83730 9 7355304 to 7355314 10 + TSS region transcription start site region 83730
Tssr83731 9 7355318 to 7355358 40 + TSS region transcription start site region 83731
Tssr83732 9 7355359 to 7355391 32 + TSS region transcription start site region 83732
Tssr83733 9 7355396 to 7355439 43 + TSS region transcription start site region 83733
Tssr88071 9 7355415 to 7355426 11 - TSS region transcription start site region 88071
Tssr83734 9 7355824 to 7355835 11 + TSS region transcription start site region 83734
Tssr83735 9 7355846 to 7355857 11 + TSS region transcription start site region 83735
Tssr83736 9 7357801 to 7357860 59 + TSS region transcription start site region 83736
Tssr83737 9 7357864 to 7357884 20 + TSS region transcription start site region 83737
Tssr83738 9 7358212 to 7358375 163 + TSS region transcription start site region 83738
Tssr88072 9 7358261 to 7358283 22 - TSS region transcription start site region 88072
Tssr88073 9 7358333 to 7358363 30 - TSS region transcription start site region 88073
Tssr83739 9 7358378 to 7358409 31 + TSS region transcription start site region 83739
Tssr83740 9 7358441 to 7358460 19 + TSS region transcription start site region 83740
Tssr83741 9 7358515 to 7358526 11 + TSS region transcription start site region 83741
Tssr88074 9 7358680 to 7358685 5 - TSS region transcription start site region 88074
Mmp1b 9 7368239 to 7388047 19808 - protein coding gene matrix metallopeptidase 1b (interstitial collagenase)
Mmp3 9 7445822 to 7455975 10153 + protein coding gene matrix metallopeptidase 3
Tssr83742 9 7445837 to 7445855 18 + TSS region transcription start site region 83742
Tssr83743 9 7464139 to 7464145 6 + TSS region transcription start site region 83743
Mmp1a 9 7464141 to 7476869 12728 + polymorphic pseudogene matrix metallopeptidase 1a (interstitial collagenase)
Tssr83744 9 7502340 to 7502345 5 + TSS region transcription start site region 83744
Mmp10 9 7502352 to 7510240 7888 + protein coding gene matrix metallopeptidase 10
Tssr88075 9 7556270 to 7556278 8 - TSS region transcription start site region 88075
Tssr2760 9 7558239 to 7558246 7 - TSS region transcription start site region 2760
Tssr83745 9 7558448 to 7558465 17 + TSS region transcription start site region 83745
Mmp8 9 7558456 to 7568485 10029 + protein coding gene matrix metallopeptidase 8
Gm31751 9 7558535 to 7622658 64123 - lncRNA gene predicted gene, 31751
Tssr83746 9 7560610 to 7560621 11 + TSS region transcription start site region 83746
Tssr83747 9 7561645 to 7561656 11 + TSS region transcription start site region 83747
Tssr83748 9 7566197 to 7566198 1 + TSS region transcription start site region 83748
Tssr83749 9 7567756 to 7567771 15 + TSS region transcription start site region 83749
Mmp27 9 7571396 to 7581885 10489 + protein coding gene matrix metallopeptidase 27
Tssr83750 9 7571457 to 7571489 32 + TSS region transcription start site region 83750
Tssr88076 9 7572741 to 7572752 11 - TSS region transcription start site region 88076
Tssr88077 9 7593401 to 7593411 10 - TSS region transcription start site region 88077
Tssr88078 9 7593439 to 7593443 4 - TSS region transcription start site region 88078
Tssr83751 9 7593687 to 7593693 6 + TSS region transcription start site region 83751
Gm47616 9 7599494 to 7599640 146 + pseudogene predicted gene, 47616
Tssr88079 9 7604109 to 7604118 9 - TSS region transcription start site region 88079
Tssr88080 9 7604127 to 7604130 3 - TSS region transcription start site region 88080
Tssr88081 9 7604145 to 7604167 22 - TSS region transcription start site region 88081
Tssr88082 9 7604174 to 7604188 14 - TSS region transcription start site region 88082
Tssr83752 9 7628200 to 7628204 4 + TSS region transcription start site region 83752
Mmp20 9 7628231 to 7674968 46737 + protein coding gene matrix metallopeptidase 20 (enamelysin)
Tssr88083 9 7661364 to 7661367 3 - TSS region transcription start site region 88083
AV064505 9 7669429 to 7695631 26202 - antisense lncRNA gene expressed sequence AV064505
Gm19212 9 7688974 to 7689823 849 - pseudogene predicted gene, 19212
Tssr83753 9 7692086 to 7692103 17 + TSS region transcription start site region 83753
Mmp7 9 7692090 to 7699585 7495 + protein coding gene matrix metallopeptidase 7
Tssr83754 9 7692339 to 7692366 27 + TSS region transcription start site region 83754
D9Mit57 9 7694215 to 7694379 164 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 57
Tssr83755 9 7695261 to 7695274 13 + TSS region transcription start site region 83755
Tssr83756 9 7699504 to 7699515 11 + TSS region transcription start site region 83756
Tssr2761 9 7699912 to 7699915 3 + TSS region transcription start site region 2761
Cbx3-ps8 9 7723147 to 7723694 547 + pseudogene chromobox 3, pseudogene 8
Gm10709 9 7751725 to 7752204 479 + pseudogene predicted gene 10709
Cpgi21341 9 7763642 to 7764883 1241 CpG island CpG island 21341
Tssr88084 9 7763748 to 7763761 13 - TSS region transcription start site region 88084
Tssr88085 9 7763762 to 7763775 13 - TSS region transcription start site region 88085
Tssr83757 9 7764058 to 7764177 119 + TSS region transcription start site region 83757
Tmem123 9 7764077 to 7794333 30256 + protein coding gene transmembrane protein 123
Tssr83758 9 7764179 to 7764190 11 + TSS region transcription start site region 83758
Tssr83759 9 7764200 to 7764211 11 + TSS region transcription start site region 83759
Tssr88086 9 7764755 to 7764789 34 - TSS region transcription start site region 88086
Tssr83760 9 7767772 to 7767801 29 + TSS region transcription start site region 83760
Mir5618 9 7784390 to 7784440 50 + miRNA gene microRNA 5618
Tssr83761 9 7786796 to 7786803 7 + TSS region transcription start site region 83761
Tssr83762 9 7790974 to 7791023 49 + TSS region transcription start site region 83762
Tssr83763 9 7792679 to 7792695 16 + TSS region transcription start site region 83763
Tssr83764 9 7792717 to 7792739 22 + TSS region transcription start site region 83764
Tssr83765 9 7793297 to 7793312 15 + TSS region transcription start site region 83765
Birc2 9 7818227 to 7837064 18837 - protein coding gene baculoviral IAP repeat-containing 2
Cpgi21342 9 7836425 to 7837595 1170 CpG island CpG island 21342
Tssr88087 9 7836799 to 7836810 11 - TSS region transcription start site region 88087
Tssr88088 9 7836836 to 7836850 14 - TSS region transcription start site region 88088
Tssr88089 9 7836860 to 7836883 23 - TSS region transcription start site region 88089
Tssr88090 9 7836889 to 7836910 21 - TSS region transcription start site region 88090
Tssr88091 9 7836961 to 7836974 13 - TSS region transcription start site region 88091
Tssr88092 9 7836980 to 7837096 116 - TSS region transcription start site region 88092
Tssr83766 9 7837136 to 7837152 16 + TSS region transcription start site region 83766
Tssr83767 9 7837161 to 7837243 82 + TSS region transcription start site region 83767
Birc3 9 7848699 to 7873186 24487 - protein coding gene baculoviral IAP repeat-containing 3
Tssr88093 9 7850630 to 7850657 27 - TSS region transcription start site region 88093