Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:72848605-76208616

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370 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Ath29 9 40508298 to 74700643 34192345 QTL atherosclerosis 29
Prtg 9 72807274 to 72917307 110033 + protein coding gene protogenin
Tssr86055 9 72856868 to 72856909 41 + TSS region transcription start site region 86055
A730062M13Rik 9 72869652 to 72871561 1909 + unclassified gene RIKEN cDNA A730062M13 gene
Tssr86056 9 72872432 to 72872433 1 + TSS region transcription start site region 86056
Gm37234 9 72889045 to 72890485 1440 + unclassified gene predicted gene, 37234
Cpgi22021 9 72912025 to 72912344 319 CpG island CpG island 22021
Tssr86057 9 72912772 to 72912777 5 + TSS region transcription start site region 86057
Cpgi22022 9 72924820 to 72926223 1403 CpG island CpG island 22022
Tssr86058 9 72925083 to 72925097 14 + TSS region transcription start site region 86058
Tssr86059 9 72925490 to 72925514 24 + TSS region transcription start site region 86059
Tssr86060 9 72925622 to 72925671 49 + TSS region transcription start site region 86060
Pygo1 9 72925650 to 72946015 20365 + protein coding gene pygopus 1
Cpgi22023 9 72958451 to 72959070 619 CpG island CpG island 22023
Dnaaf4 9 72958785 to 72973064 14279 + protein coding gene dynein axonemal assembly factor 4
Tssr86061 9 72958812 to 72958850 38 + TSS region transcription start site region 86061
Gm44503 9 72958852 to 73016319 57467 + protein coding gene predicted readthrough transcript (NMD candidate), 44503
Tssr86062 9 72958853 to 72958864 11 + TSS region transcription start site region 86062
Tssr86063 9 72959011 to 72959021 10 + TSS region transcription start site region 86063
Tssr86064 9 72962161 to 72962195 34 + TSS region transcription start site region 86064
Gm23567 9 72969602 to 72969708 106 + snRNA gene predicted gene, 23567
Tssr2934 9 72970208 to 72970217 9 + TSS region transcription start site region 2934
Tssr86065 9 72970235 to 72970246 11 + TSS region transcription start site region 86065
Gm37710 9 72972285 to 72973558 1273 - unclassified gene predicted gene, 37710
Ccpg1os 9 72979717 to 72985376 5659 - protein coding gene cell cycle progression 1, opposite strand
Cpgi22024 9 72985074 to 72986177 1103 CpG island CpG island 22024
Tssr90501 9 72985283 to 72985297 14 - TSS region transcription start site region 90501
Tssr2935 9 72985298 to 72985315 17 - TSS region transcription start site region 2935
Tssr90502 9 72985337 to 72985342 5 - TSS region transcription start site region 90502
Tssr90503 9 72985344 to 72985397 53 - TSS region transcription start site region 90503
Tssr86066 9 72985391 to 72985406 15 + TSS region transcription start site region 86066
Tssr86067 9 72985410 to 72985424 14 + TSS region transcription start site region 86067
Ccpg1 9 72985429 to 73016340 30911 + protein coding gene cell cycle progression 1
Tssr86068 9 72985527 to 72985567 40 + TSS region transcription start site region 86068
Tssr86069 9 72985568 to 72985642 74 + TSS region transcription start site region 86069
Tssr86070 9 72995742 to 72995753 11 + TSS region transcription start site region 86070
Gm27353 9 73005201 to 73005322 121 + miRNA gene predicted gene, 27353
Tssr86071 9 73010349 to 73010372 23 + TSS region transcription start site region 86071
Tssr86072 9 73012112 to 73012133 21 + TSS region transcription start site region 86072
Tssr86073 9 73012135 to 73012164 29 + TSS region transcription start site region 86073
Pigb 9 73015301 to 73039699 24398 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class B
Gm38192 9 73024293 to 73026139 1846 + unclassified gene predicted gene, 38192
Cpgi22025 9 73039264 to 73039971 707 CpG island CpG island 22025
Tssr90504 9 73039607 to 73039636 29 - TSS region transcription start site region 90504
Tssr90505 9 73039644 to 73039674 30 - TSS region transcription start site region 90505
Tssr90506 9 73039697 to 73039725 28 - TSS region transcription start site region 90506
Tssr86074 9 73039713 to 73039743 30 + TSS region transcription start site region 86074
2310009A05Rik 9 73039718 to 73042779 3061 + unclassified non-coding RNA gene RIKEN cDNA 2310009A05 gene
Tssr86075 9 73039746 to 73039760 14 + TSS region transcription start site region 86075
Cpgi22026 9 73044656 to 73045100 444 CpG island CpG island 22026
Tssr86076 9 73044802 to 73044825 23 + TSS region transcription start site region 86076
Tssr86077 9 73044833 to 73044864 31 + TSS region transcription start site region 86077
Rab27a 9 73044854 to 73097629 52775 + protein coding gene RAB27A, member RAS oncogene family
Tssr86078 9 73044867 to 73044881 14 + TSS region transcription start site region 86078
Tssr86079 9 73044886 to 73044908 22 + TSS region transcription start site region 86079
Gm27186 9 73060951 to 73061257 306 + pseudogene predicted gene 27186
Tssr86080 9 73064142 to 73064157 15 + TSS region transcription start site region 86080
Tssr86081 9 73064165 to 73064181 16 + TSS region transcription start site region 86081
Tssr86082 9 73064438 to 73064442 4 + TSS region transcription start site region 86082
Tssr86083 9 73065861 to 73065885 24 + TSS region transcription start site region 86083
Tssr86084 9 73065895 to 73065910 15 + TSS region transcription start site region 86084
Tssr86085 9 73093962 to 73093970 8 + TSS region transcription start site region 86085
Tssr86086 9 73094826 to 73094834 8 + TSS region transcription start site region 86086
Tssr86087 9 73094844 to 73094854 10 + TSS region transcription start site region 86087
Cpgi22027 9 73095282 to 73095631 349 CpG island CpG island 22027
Tssr86088 9 73096611 to 73096615 4 + TSS region transcription start site region 86088
Khdc3 9 73101836 to 73104438 2602 + protein coding gene KH domain containing 3, subcortical maternal complex member
Tssr86089 9 73102443 to 73102469 26 + TSS region transcription start site region 86089
Gm20509 9 73102470 to 73117920 15450 + protein coding gene predicted gene 20509
Cpgi22028 9 73103221 to 73104041 820 CpG island CpG island 22028
Cpgi22029 9 73113119 to 73113899 780 CpG island CpG island 22029
Tssr90507 9 73113328 to 73113344 16 - TSS region transcription start site region 90507
Tssr90508 9 73113348 to 73113401 53 - TSS region transcription start site region 90508
Tssr86090 9 73113447 to 73113454 7 + TSS region transcription start site region 86090
Rsl24d1 9 73113469 to 73123333 9864 + protein coding gene ribosomal L24 domain containing 1
Tssr86091 9 73113658 to 73113668 10 + TSS region transcription start site region 86091
Tssr86092 9 73122982 to 73123015 33 + TSS region transcription start site region 86092
Tssr2936 9 73125255 to 73125261 6 + TSS region transcription start site region 2936
Tssr86093 9 73125387 to 73125396 9 + TSS region transcription start site region 86093
Gm38215 9 73132689 to 73134921 2232 + unclassified gene predicted gene, 38215
Tssr90509 9 73133014 to 73133042 28 - TSS region transcription start site region 90509
Gm5745 9 73175429 to 73175741 312 - pseudogene predicted gene 5745
Tssr86094 9 73192454 to 73192458 4 + TSS region transcription start site region 86094
Tssr86095 9 73192466 to 73192469 3 + TSS region transcription start site region 86095
Tssr86096 9 73192473 to 73192485 12 + TSS region transcription start site region 86096
Gm27211 9 73192483 to 73268115 75632 + lincRNA gene predicted gene 27211
Tssr86097 9 73192497 to 73192514 17 + TSS region transcription start site region 86097
D9Mit166 9 73215705 to 73215854 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 166
Tssr86098 9 73217302 to 73217305 3 + TSS region transcription start site region 86098
Tssr86099 9 73219450 to 73219456 6 + TSS region transcription start site region 86099
Gm39371 9 73339725 to 73342169 2444 + lncRNA gene predicted gene, 39371
D9Mit107 9 73467268 to 73467397 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 107
Unc13c 9 73479422 to 73968966 489544 - protein coding gene unc-13 homolog C
D9Mit123 9 73531826 to 73531973 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 123
Adip21 9 73531826 to 73531973 147 QTL adiposity 21
D9Mit341 9 73539521 to 73539635 114 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 341
Gm37611 9 73551843 to 73553870 2027 - unclassified gene predicted gene, 37611
Gm27148 9 73676533 to 73676692 159 - pseudogene predicted gene 27148
Gm25105 9 73795128 to 73795257 129 - snoRNA gene predicted gene, 25105
Tssr90510 9 73831282 to 73831287 5 - TSS region transcription start site region 90510
Gm37326 9 73857108 to 73860178 3070 - unclassified gene predicted gene, 37326
Tssr90511 9 73967811 to 73967822 11 - TSS region transcription start site region 90511
Tssr90512 9 73968670 to 73968709 39 - TSS region transcription start site region 90512
Tssr90513 9 73968901 to 73968999 98 - TSS region transcription start site region 90513
Tssr90514 9 73969031 to 73969045 14 - TSS region transcription start site region 90514
Tssr90515 9 73969058 to 73969072 14 - TSS region transcription start site region 90515
Tssr90516 9 73969099 to 73969109 10 - TSS region transcription start site region 90516
Tssr90517 9 73988236 to 73988250 14 - TSS region transcription start site region 90517
Tssr2937 9 74015878 to 74015879 1 - TSS region transcription start site region 2937
n-R5s86 9 74059339 to 74059457 118 + rRNA gene nuclear encoded rRNA 5S 86
Gm33407 9 74087407 to 74110284 22877 - lncRNA gene predicted gene, 33407
Tssr86100 9 74110321 to 74110340 19 + TSS region transcription start site region 86100
Wdr72 9 74110331 to 74283203 172872 + protein coding gene WD repeat domain 72
Tssr86101 9 74110342 to 74110366 24 + TSS region transcription start site region 86101
Tssr86102 9 74110372 to 74110411 39 + TSS region transcription start site region 86102
Tssr86103 9 74157237 to 74157258 21 + TSS region transcription start site region 86103
D9Dcr11 9 74336046 to 74336146 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 11
Tssr86104 9 74354082 to 74354084 2 + TSS region transcription start site region 86104
Tssr86105 9 74362610 to 74362612 2 + TSS region transcription start site region 86105
Gm24141 9 74362610 to 74362724 114 + snRNA gene predicted gene, 24141
Nr1h2-ps 9 74364601 to 74365017 416 - pseudogene nuclear receptor subfamily 1, group H, member 2, pseudogene
D9Mit342 9 74375338 to 74375462 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 342
Gm33459 9 74519696 to 74528686 8990 - lncRNA gene predicted gene, 33459
Tssr90518 9 74528605 to 74528616 11 - TSS region transcription start site region 90518
Tssr90519 9 74528652 to 74528668 16 - TSS region transcription start site region 90519
Gm28622 9 74560582 to 74561378 796 - lincRNA gene predicted gene 28622
Gm27189 9 74568238 to 74568427 189 + pseudogene predicted gene 27189
D9Mit318 9 74593626 to 74593744 118 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-318
D9Mit156 9 74700509 to 74700643 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 156
Gm40533 9 74703757 to 74711482 7725 - lncRNA gene predicted gene, 40533
Gm27233 9 74709262 to 74709568 306 + pseudogene predicted gene 27233
Gm39372 9 74712308 to 74723757 11449 - lncRNA gene predicted gene, 39372
Tssr2938 9 74714289 to 74714292 3 + TSS region transcription start site region 2938
Tssr2939 9 74739398 to 74739399 1 + TSS region transcription start site region 2939
Gm22315 9 74782070 to 74782212 142 + snoRNA gene predicted gene, 22315
Gm33562 9 74792582 to 74863136 70554 - lncRNA gene predicted gene, 33562
Cpgi22030 9 74846909 to 74847305 396 CpG island CpG island 22030
Cpgi22031 9 74848327 to 74849728 1401 CpG island CpG island 22031
Gm16551 9 74848437 to 74852872 4435 + lncRNA gene predicted gene 16551
Gm20649 9 74848463 to 74891476 43013 + lincRNA gene predicted gene 20649
Tssr86106 9 74848467 to 74848531 64 + TSS region transcription start site region 86106
Tssr86107 9 74848732 to 74848735 3 + TSS region transcription start site region 86107
Gm28182 9 74852909 to 74855385 2476 - lincRNA gene predicted gene 28182
Cpgi22032 9 74853729 to 74854105 376 CpG island CpG island 22032
Cpgi22033 9 74857185 to 74857511 326 CpG island CpG island 22033
Cpgi22034 9 74861215 to 74864008 2793 CpG island CpG island 22034
Tssr86108 9 74861857 to 74861864 7 + TSS region transcription start site region 86108
Tssr86109 9 74861875 to 74861884 9 + TSS region transcription start site region 86109
Tssr86110 9 74861888 to 74861915 27 + TSS region transcription start site region 86110
Onecut1 9 74861921 to 74889648 27727 + protein coding gene one cut domain, family member 1
Tssr2940 9 74861936 to 74861937 1 + TSS region transcription start site region 2940
Tssr90520 9 74863395 to 74863436 41 - TSS region transcription start site region 90520
Gm38678 9 74863408 to 74871744 8336 + lncRNA gene predicted gene, 38678
Tssr86111 9 74865635 to 74865653 18 + TSS region transcription start site region 86111
Tssr86112 9 74866474 to 74866489 15 + TSS region transcription start site region 86112
Tssr86113 9 74866496 to 74866511 15 + TSS region transcription start site region 86113
Cpgi22035 9 74866956 to 74867211 255 CpG island CpG island 22035
Cpgi22036 9 74909464 to 74909645 181 CpG island CpG island 22036
Tssr90521 9 74910440 to 74910446 6 - TSS region transcription start site region 90521
Tssr90522 9 74927541 to 74927542 1 - TSS region transcription start site region 90522
D9Mit1008 9 74950830 to 74950972 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1008
Cpgi22037 9 74952484 to 74953583 1099 CpG island CpG island 22037
Tssr86114 9 74952852 to 74952935 83 + TSS region transcription start site region 86114
Fam214a 9 74952884 to 75032468 79584 + protein coding gene family with sequence similarity 214, member A
Tssr86115 9 74953074 to 74953091 17 + TSS region transcription start site region 86115
Tssr86116 9 74953156 to 74953209 53 + TSS region transcription start site region 86116
Tssr86117 9 74953561 to 74953575 14 + TSS region transcription start site region 86117
Cpgi22038 9 74975997 to 74976338 341 CpG island CpG island 22038
Tssr86118 9 74976096 to 74976177 81 + TSS region transcription start site region 86118
Tssr86119 9 75004361 to 75004374 13 + TSS region transcription start site region 86119
Tssr86120 9 75011825 to 75011830 5 + TSS region transcription start site region 86120
Cpgi22039 9 75037488 to 75038457 969 CpG island CpG island 22039
Arpp19 9 75037614 to 75060313 22699 + protein coding gene cAMP-regulated phosphoprotein 19
Tssr86121 9 75037656 to 75037701 45 + TSS region transcription start site region 86121
Tssr86122 9 75037712 to 75037737 25 + TSS region transcription start site region 86122
Tssr86123 9 75037744 to 75037755 11 + TSS region transcription start site region 86123
Tssr86124 9 75037797 to 75037806 9 + TSS region transcription start site region 86124
Tssr86125 9 75037809 to 75037820 11 + TSS region transcription start site region 86125
Tssr86126 9 75037838 to 75037852 14 + TSS region transcription start site region 86126
Tssr90523 9 75038470 to 75038474 4 - TSS region transcription start site region 90523
Tssr90524 9 75038628 to 75038677 49 - TSS region transcription start site region 90524
Tssr86127 9 75052073 to 75052082 9 + TSS region transcription start site region 86127
Tssr86128 9 75052083 to 75052090 7 + TSS region transcription start site region 86128
Tssr86129 9 75052091 to 75052136 45 + TSS region transcription start site region 86129
Tssr86130 9 75052142 to 75052153 11 + TSS region transcription start site region 86130
Tssr90525 9 75052258 to 75052288 30 - TSS region transcription start site region 90525
Gm2981 9 75061354 to 75062047 693 - pseudogene predicted gene 2981
4930504B08Rik 9 75070389 to 75071153 764 unclassified gene RIKEN cDNA 4930504B08 gene
Cpgi22040 9 75070594 to 75072128 1534 CpG island CpG island 22040
l9Rl3 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 3
l9Rl1 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 1
l9Rl2 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 2
l9Rl4 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 4
l9Rl5 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 5
l9Rl6 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 6
l9Rl7 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 7
l9Rl8 9 75071015 to 75900310 829295 heritable phenotypic marker lethal, Chr 9, Russell 8
Myo5a 9 75071015 to 75223688 152673 + protein coding gene myosin VA
Tssr90526 9 75071123 to 75071142 19 - TSS region transcription start site region 90526