Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:72447420-72877468

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mns1 9 72438517 to 72458581 20064 + protein coding gene meiosis-specific nuclear structural protein 1
Tssr86004 9 72448618 to 72448632 14 + TSS region transcription start site region 86004
Tssr86005 9 72448701 to 72448712 11 + TSS region transcription start site region 86005
Gm39370 9 72452826 to 72456539 3713 - lncRNA gene predicted gene, 39370
Tex9 9 72458055 to 72492686 34631 - protein coding gene testis expressed gene 9
Tssr86006 9 72461794 to 72461798 4 + TSS region transcription start site region 86006
Gm33004 9 72488082 to 72522201 34119 + lncRNA gene predicted gene, 33004
Cpgi22016 9 72491676 to 72492159 483 CpG island CpG island 22016
Tssr90492 9 72491950 to 72491989 39 - TSS region transcription start site region 90492
Tssr86007 9 72492041 to 72492067 26 + TSS region transcription start site region 86007
Tssr90493 9 72510937 to 72510946 9 - TSS region transcription start site region 90493
Tssr90494 9 72510957 to 72510969 12 - TSS region transcription start site region 90494
Gm28010 9 72511209 to 72511334 125 - miRNA gene predicted gene, 28010
4930509E16Rik 9 72518250 to 72531858 13608 - lincRNA gene RIKEN cDNA 4930509E16 gene
Cpgi22017 9 72531468 to 72533170 1702 CpG island CpG island 22017
Tssr86008 9 72531728 to 72531757 29 + TSS region transcription start site region 86008
Tssr86009 9 72531933 to 72531950 17 + TSS region transcription start site region 86009
Tssr86010 9 72532184 to 72532207 23 + TSS region transcription start site region 86010
Tssr86011 9 72532214 to 72532271 57 + TSS region transcription start site region 86011
Rfx7 9 72532240 to 72622937 90697 + protein coding gene regulatory factor X, 7
Tssr86012 9 72532787 to 72532828 41 + TSS region transcription start site region 86012
Tssr2933 9 72536410 to 72536414 4 + TSS region transcription start site region 2933
Tssr86013 9 72537744 to 72537748 4 + TSS region transcription start site region 86013
Tssr86014 9 72551122 to 72551126 4 + TSS region transcription start site region 86014
Gm19427 9 72551728 to 72551935 207 + pseudogene predicted gene, 19427
Tssr86015 9 72570795 to 72570809 14 + TSS region transcription start site region 86015
Tssr86016 9 72581386 to 72581389 3 + TSS region transcription start site region 86016
Gm37105 9 72594923 to 72597007 2084 + unclassified gene predicted gene, 37105
Gm18014 9 72606411 to 72607161 750 - pseudogene predicted gene, 18014
Gm27241 9 72613790 to 72617053 3263 - antisense lncRNA gene predicted gene 27241
Gm27232 9 72618693 to 72619520 827 - antisense lncRNA gene predicted gene 27232
Tssr86017 9 72620445 to 72620447 2 + TSS region transcription start site region 86017
Gm23057 9 72633447 to 72633553 106 + snRNA gene predicted gene, 23057
Cpgi22018 9 72661626 to 72663414 1788 CpG island CpG island 22018
Tssr86018 9 72661981 to 72662012 31 + TSS region transcription start site region 86018
Nedd4 9 72662347 to 72749848 87501 + protein coding gene neural precursor cell expressed, developmentally down-regulated 4
Tssr86019 9 72662401 to 72662412 11 + TSS region transcription start site region 86019
Tssr86020 9 72662420 to 72662468 48 + TSS region transcription start site region 86020
Tssr86021 9 72662473 to 72662523 50 + TSS region transcription start site region 86021
Tssr90495 9 72663250 to 72663270 20 - TSS region transcription start site region 90495
Tssr90496 9 72663286 to 72663297 11 - TSS region transcription start site region 90496
Tssr90497 9 72663304 to 72663326 22 - TSS region transcription start site region 90497
Tssr86022 9 72663755 to 72663769 14 + TSS region transcription start site region 86022
Tssr86023 9 72669984 to 72670004 20 + TSS region transcription start site region 86023
Tssr86024 9 72670032 to 72670056 24 + TSS region transcription start site region 86024
Tssr86025 9 72670057 to 72670080 23 + TSS region transcription start site region 86025
Tssr86026 9 72671247 to 72671273 26 + TSS region transcription start site region 86026
Tssr86027 9 72676564 to 72676573 9 + TSS region transcription start site region 86027
Tssr86028 9 72679129 to 72679132 3 + TSS region transcription start site region 86028
Tssr86029 9 72679259 to 72679263 4 + TSS region transcription start site region 86029
Tssr86030 9 72686058 to 72686075 17 + TSS region transcription start site region 86030
A530064N14Rik 9 72687224 to 72688715 1491 + unclassified gene RIKEN cDNA A530064N14 gene
Tssr90498 9 72691044 to 72691047 3 - TSS region transcription start site region 90498
Tssr86031 9 72693194 to 72693209 15 + TSS region transcription start site region 86031
Tssr86032 9 72693579 to 72693609 30 + TSS region transcription start site region 86032
Tssr86033 9 72694030 to 72694077 47 + TSS region transcription start site region 86033
Gm37955 9 72716960 to 72717171 211 + unclassified gene predicted gene, 37955
Tssr86034 9 72719147 to 72719151 4 + TSS region transcription start site region 86034
Tssr90499 9 72721383 to 72721398 15 - TSS region transcription start site region 90499
Tssr86035 9 72721528 to 72721557 29 + TSS region transcription start site region 86035
Tssr90500 9 72726478 to 72726505 27 - TSS region transcription start site region 90500
Gm36936 9 72728140 to 72730888 2748 + unclassified gene predicted gene, 36936
Tssr86036 9 72735154 to 72735210 56 + TSS region transcription start site region 86036
Tssr86037 9 72736866 to 72736887 21 + TSS region transcription start site region 86037
Tssr86038 9 72742667 to 72742688 21 + TSS region transcription start site region 86038
Tssr86039 9 72746432 to 72746452 20 + TSS region transcription start site region 86039
Tssr86040 9 72747995 to 72748025 30 + TSS region transcription start site region 86040
Tssr86041 9 72748960 to 72748980 20 + TSS region transcription start site region 86041
Tssr86042 9 72749012 to 72749034 22 + TSS region transcription start site region 86042
Tssr86043 9 72749096 to 72749114 18 + TSS region transcription start site region 86043
Tssr86044 9 72749301 to 72749314 13 + TSS region transcription start site region 86044
Tssr86045 9 72749375 to 72749393 18 + TSS region transcription start site region 86045
Tssr86046 9 72749416 to 72749443 27 + TSS region transcription start site region 86046
Tssr86047 9 72749549 to 72749574 25 + TSS region transcription start site region 86047
Cpgi22019 9 72766836 to 72767120 284 CpG island CpG island 22019
Gm27204 9 72774063 to 72776225 2162 - lincRNA gene predicted gene 27204
Cpgi22020 9 72806733 to 72807934 1201 CpG island CpG island 22020
Tssr86048 9 72807132 to 72807151 19 + TSS region transcription start site region 86048
Tssr86049 9 72807159 to 72807176 17 + TSS region transcription start site region 86049
Tssr86050 9 72807193 to 72807220 27 + TSS region transcription start site region 86050
Tssr86051 9 72807222 to 72807282 60 + TSS region transcription start site region 86051
Prtg 9 72807274 to 72917307 110033 + protein coding gene protogenin
Tssr86052 9 72807301 to 72807314 13 + TSS region transcription start site region 86052
Tssr86053 9 72807335 to 72807351 16 + TSS region transcription start site region 86053
D9Mit340 9 72816350 to 72816625 275 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 340
Gm27203 9 72827257 to 72827563 306 - pseudogene predicted gene 27203
Tssr86054 9 72842741 to 72842774 33 + TSS region transcription start site region 86054
Tssr86055 9 72856868 to 72856909 41 + TSS region transcription start site region 86055
A730062M13Rik 9 72869652 to 72871561 1909 + unclassified gene RIKEN cDNA A730062M13 gene
Tssr86056 9 72872432 to 72872433 1 + TSS region transcription start site region 86056