Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:72400344-73570397

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207 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Gm27230 9 72395974 to 72404510 8536 + lncRNA gene predicted gene 27230
Tssr85991 9 72400343 to 72400352 9 + TSS region transcription start site region 85991
Tssr85992 9 72400392 to 72400414 22 + TSS region transcription start site region 85992
Tssr85993 9 72400424 to 72400434 10 + TSS region transcription start site region 85993
Tssr85994 9 72401742 to 72401745 3 + TSS region transcription start site region 85994
Tssr90489 9 72403640 to 72403654 14 - TSS region transcription start site region 90489
Tssr90490 9 72407114 to 72407125 11 - TSS region transcription start site region 90490
Tssr85995 9 72408565 to 72408574 9 + TSS region transcription start site region 85995
Tssr85996 9 72408586 to 72408593 7 + TSS region transcription start site region 85996
BC065403 9 72408644 to 72409867 1223 - antisense lncRNA gene cDNA sequence BC065403
Gm27255 9 72409268 to 72409878 610 + lincRNA gene predicted gene 27255
Tssr90491 9 72409772 to 72409822 50 - TSS region transcription start site region 90491
Gm27254 9 72431127 to 72431643 516 - pseudogene predicted gene 27254
Tssr85997 9 72437985 to 72438016 31 + TSS region transcription start site region 85997
Cpgi22015 9 72438018 to 72438722 704 CpG island CpG island 22015
Mns1 9 72438517 to 72458581 20064 + protein coding gene meiosis-specific nuclear structural protein 1
Tssr85998 9 72438519 to 72438533 14 + TSS region transcription start site region 85998
Tssr85999 9 72438534 to 72438578 44 + TSS region transcription start site region 85999
Tssr86000 9 72438579 to 72438598 19 + TSS region transcription start site region 86000
Tssr86001 9 72438609 to 72438616 7 + TSS region transcription start site region 86001
Tssr86002 9 72438843 to 72438846 3 + TSS region transcription start site region 86002
Gm36948 9 72440760 to 72444006 3246 + unclassified gene predicted gene, 36948
Gm27231 9 72441079 to 72441779 700 - antisense lncRNA gene predicted gene 27231
Tssr86003 9 72442255 to 72442261 6 + TSS region transcription start site region 86003
D9Dcr10 9 72444021 to 72444116 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 10
Tssr86004 9 72448618 to 72448632 14 + TSS region transcription start site region 86004
Tssr86005 9 72448701 to 72448712 11 + TSS region transcription start site region 86005
Gm39370 9 72452826 to 72456539 3713 - lncRNA gene predicted gene, 39370
Tex9 9 72458055 to 72492686 34631 - protein coding gene testis expressed gene 9
Tssr86006 9 72461794 to 72461798 4 + TSS region transcription start site region 86006
Gm33004 9 72488082 to 72522201 34119 + lncRNA gene predicted gene, 33004
Cpgi22016 9 72491676 to 72492159 483 CpG island CpG island 22016
Tssr90492 9 72491950 to 72491989 39 - TSS region transcription start site region 90492
Tssr86007 9 72492041 to 72492067 26 + TSS region transcription start site region 86007
Tssr90493 9 72510937 to 72510946 9 - TSS region transcription start site region 90493
Tssr90494 9 72510957 to 72510969 12 - TSS region transcription start site region 90494
Gm28010 9 72511209 to 72511334 125 - miRNA gene predicted gene, 28010
4930509E16Rik 9 72518250 to 72531858 13608 - lincRNA gene RIKEN cDNA 4930509E16 gene
Cpgi22017 9 72531468 to 72533170 1702 CpG island CpG island 22017
Tssr86008 9 72531728 to 72531757 29 + TSS region transcription start site region 86008
Tssr86009 9 72531933 to 72531950 17 + TSS region transcription start site region 86009
Tssr86010 9 72532184 to 72532207 23 + TSS region transcription start site region 86010
Tssr86011 9 72532214 to 72532271 57 + TSS region transcription start site region 86011
Rfx7 9 72532240 to 72622937 90697 + protein coding gene regulatory factor X, 7
Tssr86012 9 72532787 to 72532828 41 + TSS region transcription start site region 86012
Tssr2933 9 72536410 to 72536414 4 + TSS region transcription start site region 2933
Tssr86013 9 72537744 to 72537748 4 + TSS region transcription start site region 86013
Tssr86014 9 72551122 to 72551126 4 + TSS region transcription start site region 86014
Gm19427 9 72551728 to 72551935 207 + pseudogene predicted gene, 19427
Tssr86015 9 72570795 to 72570809 14 + TSS region transcription start site region 86015
Tssr86016 9 72581386 to 72581389 3 + TSS region transcription start site region 86016
Gm37105 9 72594923 to 72597007 2084 + unclassified gene predicted gene, 37105
Gm18014 9 72606411 to 72607161 750 - pseudogene predicted gene, 18014
Gm27241 9 72613790 to 72617053 3263 - antisense lncRNA gene predicted gene 27241
Gm27232 9 72618693 to 72619520 827 - antisense lncRNA gene predicted gene 27232
Tssr86017 9 72620445 to 72620447 2 + TSS region transcription start site region 86017
Gm23057 9 72633447 to 72633553 106 + snRNA gene predicted gene, 23057
Cpgi22018 9 72661626 to 72663414 1788 CpG island CpG island 22018
Tssr86018 9 72661981 to 72662012 31 + TSS region transcription start site region 86018
Nedd4 9 72662347 to 72749848 87501 + protein coding gene neural precursor cell expressed, developmentally down-regulated 4
Tssr86019 9 72662401 to 72662412 11 + TSS region transcription start site region 86019
Tssr86020 9 72662420 to 72662468 48 + TSS region transcription start site region 86020
Tssr86021 9 72662473 to 72662523 50 + TSS region transcription start site region 86021
Tssr90495 9 72663250 to 72663270 20 - TSS region transcription start site region 90495
Tssr90496 9 72663286 to 72663297 11 - TSS region transcription start site region 90496
Tssr90497 9 72663304 to 72663326 22 - TSS region transcription start site region 90497
Tssr86022 9 72663755 to 72663769 14 + TSS region transcription start site region 86022
Tssr86023 9 72669984 to 72670004 20 + TSS region transcription start site region 86023
Tssr86024 9 72670032 to 72670056 24 + TSS region transcription start site region 86024
Tssr86025 9 72670057 to 72670080 23 + TSS region transcription start site region 86025
Tssr86026 9 72671247 to 72671273 26 + TSS region transcription start site region 86026
Tssr86027 9 72676564 to 72676573 9 + TSS region transcription start site region 86027
Tssr86028 9 72679129 to 72679132 3 + TSS region transcription start site region 86028
Tssr86029 9 72679259 to 72679263 4 + TSS region transcription start site region 86029
Tssr86030 9 72686058 to 72686075 17 + TSS region transcription start site region 86030
A530064N14Rik 9 72687224 to 72688715 1491 + unclassified gene RIKEN cDNA A530064N14 gene
Tssr90498 9 72691044 to 72691047 3 - TSS region transcription start site region 90498
Tssr86031 9 72693194 to 72693209 15 + TSS region transcription start site region 86031
Tssr86032 9 72693579 to 72693609 30 + TSS region transcription start site region 86032
Tssr86033 9 72694030 to 72694077 47 + TSS region transcription start site region 86033
Gm37955 9 72716960 to 72717171 211 + unclassified gene predicted gene, 37955
Tssr86034 9 72719147 to 72719151 4 + TSS region transcription start site region 86034
Tssr90499 9 72721383 to 72721398 15 - TSS region transcription start site region 90499
Tssr86035 9 72721528 to 72721557 29 + TSS region transcription start site region 86035
Tssr90500 9 72726478 to 72726505 27 - TSS region transcription start site region 90500
Gm36936 9 72728140 to 72730888 2748 + unclassified gene predicted gene, 36936
Tssr86036 9 72735154 to 72735210 56 + TSS region transcription start site region 86036
Tssr86037 9 72736866 to 72736887 21 + TSS region transcription start site region 86037
Tssr86038 9 72742667 to 72742688 21 + TSS region transcription start site region 86038
Tssr86039 9 72746432 to 72746452 20 + TSS region transcription start site region 86039
Tssr86040 9 72747995 to 72748025 30 + TSS region transcription start site region 86040
Tssr86041 9 72748960 to 72748980 20 + TSS region transcription start site region 86041
Tssr86042 9 72749012 to 72749034 22 + TSS region transcription start site region 86042
Tssr86043 9 72749096 to 72749114 18 + TSS region transcription start site region 86043
Tssr86044 9 72749301 to 72749314 13 + TSS region transcription start site region 86044
Tssr86045 9 72749375 to 72749393 18 + TSS region transcription start site region 86045
Tssr86046 9 72749416 to 72749443 27 + TSS region transcription start site region 86046
Tssr86047 9 72749549 to 72749574 25 + TSS region transcription start site region 86047
Cpgi22019 9 72766836 to 72767120 284 CpG island CpG island 22019
Gm27204 9 72774063 to 72776225 2162 - lincRNA gene predicted gene 27204
Cpgi22020 9 72806733 to 72807934 1201 CpG island CpG island 22020
Tssr86048 9 72807132 to 72807151 19 + TSS region transcription start site region 86048
Tssr86049 9 72807159 to 72807176 17 + TSS region transcription start site region 86049
Tssr86050 9 72807193 to 72807220 27 + TSS region transcription start site region 86050
Tssr86051 9 72807222 to 72807282 60 + TSS region transcription start site region 86051
Prtg 9 72807274 to 72917307 110033 + protein coding gene protogenin
Tssr86052 9 72807301 to 72807314 13 + TSS region transcription start site region 86052
Tssr86053 9 72807335 to 72807351 16 + TSS region transcription start site region 86053
D9Mit340 9 72816350 to 72816625 275 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 340
Gm27203 9 72827257 to 72827563 306 - pseudogene predicted gene 27203
Tssr86054 9 72842741 to 72842774 33 + TSS region transcription start site region 86054
Tssr86055 9 72856868 to 72856909 41 + TSS region transcription start site region 86055
A730062M13Rik 9 72869652 to 72871561 1909 + unclassified gene RIKEN cDNA A730062M13 gene
Tssr86056 9 72872432 to 72872433 1 + TSS region transcription start site region 86056
Gm37234 9 72889045 to 72890485 1440 + unclassified gene predicted gene, 37234
Cpgi22021 9 72912025 to 72912344 319 CpG island CpG island 22021
Tssr86057 9 72912772 to 72912777 5 + TSS region transcription start site region 86057
Cpgi22022 9 72924820 to 72926223 1403 CpG island CpG island 22022
Tssr86058 9 72925083 to 72925097 14 + TSS region transcription start site region 86058
Tssr86059 9 72925490 to 72925514 24 + TSS region transcription start site region 86059
Tssr86060 9 72925622 to 72925671 49 + TSS region transcription start site region 86060
Pygo1 9 72925650 to 72946015 20365 + protein coding gene pygopus 1
Cpgi22023 9 72958451 to 72959070 619 CpG island CpG island 22023
Dnaaf4 9 72958785 to 72973064 14279 + protein coding gene dynein axonemal assembly factor 4
Tssr86061 9 72958812 to 72958850 38 + TSS region transcription start site region 86061
Gm44503 9 72958852 to 73016319 57467 + protein coding gene predicted readthrough transcript (NMD candidate), 44503
Tssr86062 9 72958853 to 72958864 11 + TSS region transcription start site region 86062
Tssr86063 9 72959011 to 72959021 10 + TSS region transcription start site region 86063
Tssr86064 9 72962161 to 72962195 34 + TSS region transcription start site region 86064
Gm23567 9 72969602 to 72969708 106 + snRNA gene predicted gene, 23567
Tssr2934 9 72970208 to 72970217 9 + TSS region transcription start site region 2934
Tssr86065 9 72970235 to 72970246 11 + TSS region transcription start site region 86065
Gm37710 9 72972285 to 72973558 1273 - unclassified gene predicted gene, 37710
Ccpg1os 9 72979717 to 72985376 5659 - protein coding gene cell cycle progression 1, opposite strand
Cpgi22024 9 72985074 to 72986177 1103 CpG island CpG island 22024
Tssr90501 9 72985283 to 72985297 14 - TSS region transcription start site region 90501
Tssr2935 9 72985298 to 72985315 17 - TSS region transcription start site region 2935
Tssr90502 9 72985337 to 72985342 5 - TSS region transcription start site region 90502
Tssr90503 9 72985344 to 72985397 53 - TSS region transcription start site region 90503
Tssr86066 9 72985391 to 72985406 15 + TSS region transcription start site region 86066
Tssr86067 9 72985410 to 72985424 14 + TSS region transcription start site region 86067
Ccpg1 9 72985429 to 73016340 30911 + protein coding gene cell cycle progression 1
Tssr86068 9 72985527 to 72985567 40 + TSS region transcription start site region 86068
Tssr86069 9 72985568 to 72985642 74 + TSS region transcription start site region 86069
Tssr86070 9 72995742 to 72995753 11 + TSS region transcription start site region 86070
Gm27353 9 73005201 to 73005322 121 + miRNA gene predicted gene, 27353
Tssr86071 9 73010349 to 73010372 23 + TSS region transcription start site region 86071
Tssr86072 9 73012112 to 73012133 21 + TSS region transcription start site region 86072
Tssr86073 9 73012135 to 73012164 29 + TSS region transcription start site region 86073
Pigb 9 73015301 to 73039699 24398 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class B
Gm38192 9 73024293 to 73026139 1846 + unclassified gene predicted gene, 38192
Cpgi22025 9 73039264 to 73039971 707 CpG island CpG island 22025
Tssr90504 9 73039607 to 73039636 29 - TSS region transcription start site region 90504
Tssr90505 9 73039644 to 73039674 30 - TSS region transcription start site region 90505
Tssr90506 9 73039697 to 73039725 28 - TSS region transcription start site region 90506
Tssr86074 9 73039713 to 73039743 30 + TSS region transcription start site region 86074
2310009A05Rik 9 73039718 to 73042779 3061 + unclassified non-coding RNA gene RIKEN cDNA 2310009A05 gene
Tssr86075 9 73039746 to 73039760 14 + TSS region transcription start site region 86075
Cpgi22026 9 73044656 to 73045100 444 CpG island CpG island 22026
Tssr86076 9 73044802 to 73044825 23 + TSS region transcription start site region 86076
Tssr86077 9 73044833 to 73044864 31 + TSS region transcription start site region 86077
Rab27a 9 73044854 to 73097629 52775 + protein coding gene RAB27A, member RAS oncogene family
Tssr86078 9 73044867 to 73044881 14 + TSS region transcription start site region 86078
Tssr86079 9 73044886 to 73044908 22 + TSS region transcription start site region 86079
Gm27186 9 73060951 to 73061257 306 + pseudogene predicted gene 27186
Tssr86080 9 73064142 to 73064157 15 + TSS region transcription start site region 86080
Tssr86081 9 73064165 to 73064181 16 + TSS region transcription start site region 86081
Tssr86082 9 73064438 to 73064442 4 + TSS region transcription start site region 86082
Tssr86083 9 73065861 to 73065885 24 + TSS region transcription start site region 86083
Tssr86084 9 73065895 to 73065910 15 + TSS region transcription start site region 86084
Tssr86085 9 73093962 to 73093970 8 + TSS region transcription start site region 86085
Tssr86086 9 73094826 to 73094834 8 + TSS region transcription start site region 86086
Tssr86087 9 73094844 to 73094854 10 + TSS region transcription start site region 86087
Cpgi22027 9 73095282 to 73095631 349 CpG island CpG island 22027
Tssr86088 9 73096611 to 73096615 4 + TSS region transcription start site region 86088
Khdc3 9 73101836 to 73104438 2602 + protein coding gene KH domain containing 3, subcortical maternal complex member
Tssr86089 9 73102443 to 73102469 26 + TSS region transcription start site region 86089
Gm20509 9 73102470 to 73117920 15450 + protein coding gene predicted gene 20509
Cpgi22028 9 73103221 to 73104041 820 CpG island CpG island 22028
Cpgi22029 9 73113119 to 73113899 780 CpG island CpG island 22029
Tssr90507 9 73113328 to 73113344 16 - TSS region transcription start site region 90507
Tssr90508 9 73113348 to 73113401 53 - TSS region transcription start site region 90508
Tssr86090 9 73113447 to 73113454 7 + TSS region transcription start site region 86090
Rsl24d1 9 73113469 to 73123333 9864 + protein coding gene ribosomal L24 domain containing 1
Tssr86091 9 73113658 to 73113668 10 + TSS region transcription start site region 86091
Tssr86092 9 73122982 to 73123015 33 + TSS region transcription start site region 86092
Tssr2936 9 73125255 to 73125261 6 + TSS region transcription start site region 2936
Tssr86093 9 73125387 to 73125396 9 + TSS region transcription start site region 86093
Gm38215 9 73132689 to 73134921 2232 + unclassified gene predicted gene, 38215
Tssr90509 9 73133014 to 73133042 28 - TSS region transcription start site region 90509
Gm5745 9 73175429 to 73175741 312 - pseudogene predicted gene 5745
Tssr86094 9 73192454 to 73192458 4 + TSS region transcription start site region 86094
Tssr86095 9 73192466 to 73192469 3 + TSS region transcription start site region 86095
Tssr86096 9 73192473 to 73192485 12 + TSS region transcription start site region 86096
Gm27211 9 73192483 to 73268115 75632 + lincRNA gene predicted gene 27211
Tssr86097 9 73192497 to 73192514 17 + TSS region transcription start site region 86097
D9Mit166 9 73215705 to 73215854 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 166
Tssr86098 9 73217302 to 73217305 3 + TSS region transcription start site region 86098
Tssr86099 9 73219450 to 73219456 6 + TSS region transcription start site region 86099