Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:72231836-73974438

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256 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Gm25163 9 72257036 to 72257139 103 - snRNA gene predicted gene, 25163
Gm27253 9 72268614 to 72274856 6242 - lincRNA gene predicted gene 27253
Tssr90484 9 72271324 to 72271327 3 - TSS region transcription start site region 90484
Cpgi22014 9 72274515 to 72275732 1217 CpG island CpG island 22014
Tssr85968 9 72274873 to 72274886 13 + TSS region transcription start site region 85968
Zfp280d 9 72274888 to 72363779 88891 + protein coding gene zinc finger protein 280D
Tssr85969 9 72274901 to 72274913 12 + TSS region transcription start site region 85969
Tssr85970 9 72274941 to 72274950 9 + TSS region transcription start site region 85970
Tssr85971 9 72274966 to 72275013 47 + TSS region transcription start site region 85971
Tssr85972 9 72275019 to 72275026 7 + TSS region transcription start site region 85972
Tssr85973 9 72275487 to 72275499 12 + TSS region transcription start site region 85973
Tssr85974 9 72279158 to 72279163 5 + TSS region transcription start site region 85974
Tssr85975 9 72289640 to 72289646 6 + TSS region transcription start site region 85975
Gm19353 9 72289667 to 72290111 444 + pseudogene predicted gene, 19353
Gm17828 9 72292542 to 72293340 798 - pseudogene predicted gene, 17828
Tssr85976 9 72294312 to 72294315 3 + TSS region transcription start site region 85976
Tssr85977 9 72305870 to 72305876 6 + TSS region transcription start site region 85977
Tssr85978 9 72306669 to 72306679 10 + TSS region transcription start site region 85978
Gm37983 9 72315131 to 72317136 2005 + unclassified gene predicted gene, 37983
Tssr85979 9 72352366 to 72352370 4 + TSS region transcription start site region 85979
Gm37303 9 72355075 to 72356633 1558 + unclassified gene predicted gene, 37303
Gm37581 9 72357227 to 72358214 987 + unclassified gene predicted gene, 37581
Tssr85980 9 72357774 to 72357778 4 + TSS region transcription start site region 85980
Gm10641 9 72384388 to 72387141 2753 unclassified non-coding RNA gene predicted gene 10641
Gm37150 9 72384389 to 72387142 2753 + unclassified gene predicted gene, 37150
Tssr85981 9 72389942 to 72389945 3 + TSS region transcription start site region 85981
Tssr90485 9 72393870 to 72393879 9 - TSS region transcription start site region 90485
Tssr90486 9 72393882 to 72393895 13 - TSS region transcription start site region 90486
Tssr90487 9 72393960 to 72393970 10 - TSS region transcription start site region 90487
Tssr85982 9 72394034 to 72394052 18 + TSS region transcription start site region 85982
Tssr85983 9 72394113 to 72394127 14 + TSS region transcription start site region 85983
Tssr85984 9 72394136 to 72394148 12 + TSS region transcription start site region 85984
Tssr85985 9 72394348 to 72394351 3 + TSS region transcription start site region 85985
Tssr85986 9 72395959 to 72395975 16 + TSS region transcription start site region 85986
Gm27230 9 72395974 to 72404510 8536 + lncRNA gene predicted gene 27230
Tssr85987 9 72396259 to 72396279 20 + TSS region transcription start site region 85987
Tssr85988 9 72396300 to 72396318 18 + TSS region transcription start site region 85988
Tssr85989 9 72396327 to 72396345 18 + TSS region transcription start site region 85989
Tssr85990 9 72396352 to 72396363 11 + TSS region transcription start site region 85990
Tssr90488 9 72400235 to 72400248 13 - TSS region transcription start site region 90488
Tssr85991 9 72400343 to 72400352 9 + TSS region transcription start site region 85991
Tssr85992 9 72400392 to 72400414 22 + TSS region transcription start site region 85992
Tssr85993 9 72400424 to 72400434 10 + TSS region transcription start site region 85993
Tssr85994 9 72401742 to 72401745 3 + TSS region transcription start site region 85994
Tssr90489 9 72403640 to 72403654 14 - TSS region transcription start site region 90489
Tssr90490 9 72407114 to 72407125 11 - TSS region transcription start site region 90490
Tssr85995 9 72408565 to 72408574 9 + TSS region transcription start site region 85995
Tssr85996 9 72408586 to 72408593 7 + TSS region transcription start site region 85996
BC065403 9 72408644 to 72409867 1223 - antisense lncRNA gene cDNA sequence BC065403
Gm27255 9 72409268 to 72409878 610 + lincRNA gene predicted gene 27255
Tssr90491 9 72409772 to 72409822 50 - TSS region transcription start site region 90491
Gm27254 9 72431127 to 72431643 516 - pseudogene predicted gene 27254
Tssr85997 9 72437985 to 72438016 31 + TSS region transcription start site region 85997
Cpgi22015 9 72438018 to 72438722 704 CpG island CpG island 22015
Mns1 9 72438517 to 72458581 20064 + protein coding gene meiosis-specific nuclear structural protein 1
Tssr85998 9 72438519 to 72438533 14 + TSS region transcription start site region 85998
Tssr85999 9 72438534 to 72438578 44 + TSS region transcription start site region 85999
Tssr86000 9 72438579 to 72438598 19 + TSS region transcription start site region 86000
Tssr86001 9 72438609 to 72438616 7 + TSS region transcription start site region 86001
Tssr86002 9 72438843 to 72438846 3 + TSS region transcription start site region 86002
Gm36948 9 72440760 to 72444006 3246 + unclassified gene predicted gene, 36948
Gm27231 9 72441079 to 72441779 700 - antisense lncRNA gene predicted gene 27231
Tssr86003 9 72442255 to 72442261 6 + TSS region transcription start site region 86003
D9Dcr10 9 72444021 to 72444116 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 10
Tssr86004 9 72448618 to 72448632 14 + TSS region transcription start site region 86004
Tssr86005 9 72448701 to 72448712 11 + TSS region transcription start site region 86005
Gm39370 9 72452826 to 72456539 3713 - lncRNA gene predicted gene, 39370
Tex9 9 72458055 to 72492686 34631 - protein coding gene testis expressed gene 9
Tssr86006 9 72461794 to 72461798 4 + TSS region transcription start site region 86006
Gm33004 9 72488082 to 72522201 34119 + lncRNA gene predicted gene, 33004
Cpgi22016 9 72491676 to 72492159 483 CpG island CpG island 22016
Tssr90492 9 72491950 to 72491989 39 - TSS region transcription start site region 90492
Tssr86007 9 72492041 to 72492067 26 + TSS region transcription start site region 86007
Tssr90493 9 72510937 to 72510946 9 - TSS region transcription start site region 90493
Tssr90494 9 72510957 to 72510969 12 - TSS region transcription start site region 90494
Gm28010 9 72511209 to 72511334 125 - miRNA gene predicted gene, 28010
4930509E16Rik 9 72518250 to 72531858 13608 - lincRNA gene RIKEN cDNA 4930509E16 gene
Cpgi22017 9 72531468 to 72533170 1702 CpG island CpG island 22017
Tssr86008 9 72531728 to 72531757 29 + TSS region transcription start site region 86008
Tssr86009 9 72531933 to 72531950 17 + TSS region transcription start site region 86009
Tssr86010 9 72532184 to 72532207 23 + TSS region transcription start site region 86010
Tssr86011 9 72532214 to 72532271 57 + TSS region transcription start site region 86011
Rfx7 9 72532240 to 72622937 90697 + protein coding gene regulatory factor X, 7
Tssr86012 9 72532787 to 72532828 41 + TSS region transcription start site region 86012
Tssr2933 9 72536410 to 72536414 4 + TSS region transcription start site region 2933
Tssr86013 9 72537744 to 72537748 4 + TSS region transcription start site region 86013
Tssr86014 9 72551122 to 72551126 4 + TSS region transcription start site region 86014
Gm19427 9 72551728 to 72551935 207 + pseudogene predicted gene, 19427
Tssr86015 9 72570795 to 72570809 14 + TSS region transcription start site region 86015
Tssr86016 9 72581386 to 72581389 3 + TSS region transcription start site region 86016
Gm37105 9 72594923 to 72597007 2084 + unclassified gene predicted gene, 37105
Gm18014 9 72606411 to 72607161 750 - pseudogene predicted gene, 18014
Gm27241 9 72613790 to 72617053 3263 - antisense lncRNA gene predicted gene 27241
Gm27232 9 72618693 to 72619520 827 - antisense lncRNA gene predicted gene 27232
Tssr86017 9 72620445 to 72620447 2 + TSS region transcription start site region 86017
Gm23057 9 72633447 to 72633553 106 + snRNA gene predicted gene, 23057
Cpgi22018 9 72661626 to 72663414 1788 CpG island CpG island 22018
Tssr86018 9 72661981 to 72662012 31 + TSS region transcription start site region 86018
Nedd4 9 72662347 to 72749848 87501 + protein coding gene neural precursor cell expressed, developmentally down-regulated 4
Tssr86019 9 72662401 to 72662412 11 + TSS region transcription start site region 86019
Tssr86020 9 72662420 to 72662468 48 + TSS region transcription start site region 86020
Tssr86021 9 72662473 to 72662523 50 + TSS region transcription start site region 86021
Tssr90495 9 72663250 to 72663270 20 - TSS region transcription start site region 90495
Tssr90496 9 72663286 to 72663297 11 - TSS region transcription start site region 90496
Tssr90497 9 72663304 to 72663326 22 - TSS region transcription start site region 90497
Tssr86022 9 72663755 to 72663769 14 + TSS region transcription start site region 86022
Tssr86023 9 72669984 to 72670004 20 + TSS region transcription start site region 86023
Tssr86024 9 72670032 to 72670056 24 + TSS region transcription start site region 86024
Tssr86025 9 72670057 to 72670080 23 + TSS region transcription start site region 86025
Tssr86026 9 72671247 to 72671273 26 + TSS region transcription start site region 86026
Tssr86027 9 72676564 to 72676573 9 + TSS region transcription start site region 86027
Tssr86028 9 72679129 to 72679132 3 + TSS region transcription start site region 86028
Tssr86029 9 72679259 to 72679263 4 + TSS region transcription start site region 86029
Tssr86030 9 72686058 to 72686075 17 + TSS region transcription start site region 86030
A530064N14Rik 9 72687224 to 72688715 1491 + unclassified gene RIKEN cDNA A530064N14 gene
Tssr90498 9 72691044 to 72691047 3 - TSS region transcription start site region 90498
Tssr86031 9 72693194 to 72693209 15 + TSS region transcription start site region 86031
Tssr86032 9 72693579 to 72693609 30 + TSS region transcription start site region 86032
Tssr86033 9 72694030 to 72694077 47 + TSS region transcription start site region 86033
Gm37955 9 72716960 to 72717171 211 + unclassified gene predicted gene, 37955
Tssr86034 9 72719147 to 72719151 4 + TSS region transcription start site region 86034
Tssr90499 9 72721383 to 72721398 15 - TSS region transcription start site region 90499
Tssr86035 9 72721528 to 72721557 29 + TSS region transcription start site region 86035
Tssr90500 9 72726478 to 72726505 27 - TSS region transcription start site region 90500
Gm36936 9 72728140 to 72730888 2748 + unclassified gene predicted gene, 36936
Tssr86036 9 72735154 to 72735210 56 + TSS region transcription start site region 86036
Tssr86037 9 72736866 to 72736887 21 + TSS region transcription start site region 86037
Tssr86038 9 72742667 to 72742688 21 + TSS region transcription start site region 86038
Tssr86039 9 72746432 to 72746452 20 + TSS region transcription start site region 86039
Tssr86040 9 72747995 to 72748025 30 + TSS region transcription start site region 86040
Tssr86041 9 72748960 to 72748980 20 + TSS region transcription start site region 86041
Tssr86042 9 72749012 to 72749034 22 + TSS region transcription start site region 86042
Tssr86043 9 72749096 to 72749114 18 + TSS region transcription start site region 86043
Tssr86044 9 72749301 to 72749314 13 + TSS region transcription start site region 86044
Tssr86045 9 72749375 to 72749393 18 + TSS region transcription start site region 86045
Tssr86046 9 72749416 to 72749443 27 + TSS region transcription start site region 86046
Tssr86047 9 72749549 to 72749574 25 + TSS region transcription start site region 86047
Cpgi22019 9 72766836 to 72767120 284 CpG island CpG island 22019
Gm27204 9 72774063 to 72776225 2162 - lincRNA gene predicted gene 27204
Cpgi22020 9 72806733 to 72807934 1201 CpG island CpG island 22020
Tssr86048 9 72807132 to 72807151 19 + TSS region transcription start site region 86048
Tssr86049 9 72807159 to 72807176 17 + TSS region transcription start site region 86049
Tssr86050 9 72807193 to 72807220 27 + TSS region transcription start site region 86050
Tssr86051 9 72807222 to 72807282 60 + TSS region transcription start site region 86051
Prtg 9 72807274 to 72917307 110033 + protein coding gene protogenin
Tssr86052 9 72807301 to 72807314 13 + TSS region transcription start site region 86052
Tssr86053 9 72807335 to 72807351 16 + TSS region transcription start site region 86053
D9Mit340 9 72816350 to 72816625 275 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 340
Gm27203 9 72827257 to 72827563 306 - pseudogene predicted gene 27203
Tssr86054 9 72842741 to 72842774 33 + TSS region transcription start site region 86054
Tssr86055 9 72856868 to 72856909 41 + TSS region transcription start site region 86055
A730062M13Rik 9 72869652 to 72871561 1909 + unclassified gene RIKEN cDNA A730062M13 gene
Tssr86056 9 72872432 to 72872433 1 + TSS region transcription start site region 86056
Gm37234 9 72889045 to 72890485 1440 + unclassified gene predicted gene, 37234
Cpgi22021 9 72912025 to 72912344 319 CpG island CpG island 22021
Tssr86057 9 72912772 to 72912777 5 + TSS region transcription start site region 86057
Cpgi22022 9 72924820 to 72926223 1403 CpG island CpG island 22022
Tssr86058 9 72925083 to 72925097 14 + TSS region transcription start site region 86058
Tssr86059 9 72925490 to 72925514 24 + TSS region transcription start site region 86059
Tssr86060 9 72925622 to 72925671 49 + TSS region transcription start site region 86060
Pygo1 9 72925650 to 72946015 20365 + protein coding gene pygopus 1
Cpgi22023 9 72958451 to 72959070 619 CpG island CpG island 22023
Dnaaf4 9 72958785 to 72973064 14279 + protein coding gene dynein axonemal assembly factor 4
Tssr86061 9 72958812 to 72958850 38 + TSS region transcription start site region 86061
Gm44503 9 72958852 to 73016319 57467 + protein coding gene predicted readthrough transcript (NMD candidate), 44503
Tssr86062 9 72958853 to 72958864 11 + TSS region transcription start site region 86062
Tssr86063 9 72959011 to 72959021 10 + TSS region transcription start site region 86063
Tssr86064 9 72962161 to 72962195 34 + TSS region transcription start site region 86064
Gm23567 9 72969602 to 72969708 106 + snRNA gene predicted gene, 23567
Tssr2934 9 72970208 to 72970217 9 + TSS region transcription start site region 2934
Tssr86065 9 72970235 to 72970246 11 + TSS region transcription start site region 86065
Gm37710 9 72972285 to 72973558 1273 - unclassified gene predicted gene, 37710
Ccpg1os 9 72979717 to 72985376 5659 - protein coding gene cell cycle progression 1, opposite strand
Cpgi22024 9 72985074 to 72986177 1103 CpG island CpG island 22024
Tssr90501 9 72985283 to 72985297 14 - TSS region transcription start site region 90501
Tssr2935 9 72985298 to 72985315 17 - TSS region transcription start site region 2935
Tssr90502 9 72985337 to 72985342 5 - TSS region transcription start site region 90502
Tssr90503 9 72985344 to 72985397 53 - TSS region transcription start site region 90503
Tssr86066 9 72985391 to 72985406 15 + TSS region transcription start site region 86066
Tssr86067 9 72985410 to 72985424 14 + TSS region transcription start site region 86067
Ccpg1 9 72985429 to 73016340 30911 + protein coding gene cell cycle progression 1
Tssr86068 9 72985527 to 72985567 40 + TSS region transcription start site region 86068
Tssr86069 9 72985568 to 72985642 74 + TSS region transcription start site region 86069
Tssr86070 9 72995742 to 72995753 11 + TSS region transcription start site region 86070
Gm27353 9 73005201 to 73005322 121 + miRNA gene predicted gene, 27353
Tssr86071 9 73010349 to 73010372 23 + TSS region transcription start site region 86071
Tssr86072 9 73012112 to 73012133 21 + TSS region transcription start site region 86072
Tssr86073 9 73012135 to 73012164 29 + TSS region transcription start site region 86073
Pigb 9 73015301 to 73039699 24398 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class B
Gm38192 9 73024293 to 73026139 1846 + unclassified gene predicted gene, 38192
Cpgi22025 9 73039264 to 73039971 707 CpG island CpG island 22025
Tssr90504 9 73039607 to 73039636 29 - TSS region transcription start site region 90504
Tssr90505 9 73039644 to 73039674 30 - TSS region transcription start site region 90505
Tssr90506 9 73039697 to 73039725 28 - TSS region transcription start site region 90506
Tssr86074 9 73039713 to 73039743 30 + TSS region transcription start site region 86074
2310009A05Rik 9 73039718 to 73042779 3061 + unclassified non-coding RNA gene RIKEN cDNA 2310009A05 gene
Tssr86075 9 73039746 to 73039760 14 + TSS region transcription start site region 86075
Cpgi22026 9 73044656 to 73045100 444 CpG island CpG island 22026
Tssr86076 9 73044802 to 73044825 23 + TSS region transcription start site region 86076