Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:71693198-72373287

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cgnl1 9 71626509 to 71771602 145093 - protein coding gene cingulin-like 1
Tssr85965 9 71698916 to 71698925 9 + TSS region transcription start site region 85965
D9Mit210 9 71710730 to 71710921 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 210
D9Mit267 9 71712562 to 71712685 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 267
Tssr90452 9 71719349 to 71719359 10 - TSS region transcription start site region 90452
Tssr90453 9 71723567 to 71723578 11 - TSS region transcription start site region 90453
Tssr90454 9 71724543 to 71724556 13 - TSS region transcription start site region 90454
D9Dcr9 9 71755218 to 71755312 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 9
D9Mit155 9 71755218 to 71755319 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 155
Cpgi22010 9 71771072 to 71771981 909 CpG island CpG island 22010
Tssr90455 9 71771535 to 71771601 66 - TSS region transcription start site region 90455
Cpgi22011 9 71801393 to 71801779 386 CpG island CpG island 22011
Gm27220 9 71827276 to 71827537 261 - pseudogene predicted gene 27220
Gm37660 9 71840005 to 71841736 1731 - unclassified gene predicted gene, 37660
Tcf12 9 71844252 to 72111819 267567 - protein coding gene transcription factor 12
Gm38057 9 71852001 to 71855203 3202 - unclassified gene predicted gene, 38057
Tssr90456 9 71896047 to 71896102 55 - TSS region transcription start site region 90456
Tssr90457 9 71896103 to 71896108 5 - TSS region transcription start site region 90457
Tssr2932 9 71896115 to 71896116 1 - TSS region transcription start site region 2932
Gm38111 9 71896713 to 71899453 2740 - unclassified gene predicted gene, 38111
Gm18821 9 71908846 to 71909550 704 + pseudogene predicted gene, 18821
5830443J22Rik 9 71910495 to 71911654 1159 unclassified gene RIKEN cDNA 5830443J22 gene
E430034C17Rik 9 71924123 to 71925768 1645 unclassified gene RIKEN cDNA E430034C17 gene
Gm37879 9 71939591 to 71941585 1994 - unclassified gene predicted gene, 37879
Gm27152 9 71948879 to 71948977 98 + pseudogene predicted gene 27152
Tssr90458 9 71975975 to 71975980 5 - TSS region transcription start site region 90458
Tssr90459 9 71976119 to 71976121 2 - TSS region transcription start site region 90459
2810043O03Rik 9 71983827 to 71985672 1845 unclassified gene RIKEN cDNA 2810043O03 gene
Gm37663 9 71988973 to 71991271 2298 - unclassified gene predicted gene, 37663
Tssr90460 9 71996304 to 71996307 3 - TSS region transcription start site region 90460
Tssr90461 9 71996637 to 71996641 4 - TSS region transcription start site region 90461
Tssr90462 9 71997250 to 71997260 10 - TSS region transcription start site region 90462
Gm37023 9 72001378 to 72003803 2425 - unclassified gene predicted gene, 37023
Tssr90463 9 72008011 to 72008016 5 - TSS region transcription start site region 90463
Tssr90464 9 72010472 to 72010476 4 - TSS region transcription start site region 90464
A430027C01Rik 9 72011376 to 72013019 1643 - unclassified gene RIKEN cDNA A430027C01 gene
Tssr90465 9 72017211 to 72017215 4 - TSS region transcription start site region 90465
Tssr90466 9 72028505 to 72028509 4 - TSS region transcription start site region 90466
Gm27450 9 72033198 to 72033287 89 + miRNA gene predicted gene, 27450
Tssr90467 9 72034989 to 72034993 4 - TSS region transcription start site region 90467
Gm37137 9 72040552 to 72043235 2683 - unclassified gene predicted gene, 37137
Tssr90468 9 72047075 to 72047081 6 - TSS region transcription start site region 90468
Tssr85966 9 72060896 to 72060897 1 + TSS region transcription start site region 85966
Rpl15-ps2 9 72060937 to 72061549 612 + pseudogene ribosomal protein L15, pseudogene 2
Tssr90469 9 72077487 to 72077501 14 - TSS region transcription start site region 90469
Tssr90470 9 72084748 to 72084752 4 - TSS region transcription start site region 90470
Tssr90471 9 72090254 to 72090287 33 - TSS region transcription start site region 90471
Tssr90472 9 72090394 to 72090398 4 - TSS region transcription start site region 90472
Tssr90473 9 72099376 to 72099380 4 - TSS region transcription start site region 90473
Cpgi22012 9 72110589 to 72112464 1875 CpG island CpG island 22012
Tssr90474 9 72110820 to 72110831 11 - TSS region transcription start site region 90474
Tssr90475 9 72110834 to 72110870 36 - TSS region transcription start site region 90475
Tssr90476 9 72110873 to 72110916 43 - TSS region transcription start site region 90476
Tssr90477 9 72110988 to 72110997 9 - TSS region transcription start site region 90477
Tssr90478 9 72111172 to 72111225 53 - TSS region transcription start site region 90478
Tssr85967 9 72111181 to 72111196 15 + TSS region transcription start site region 85967
Tssr90479 9 72111701 to 72111712 11 - TSS region transcription start site region 90479
Tssr90480 9 72111755 to 72111817 62 - TSS region transcription start site region 90480
Tssr90481 9 72111827 to 72111895 68 - TSS region transcription start site region 90481
Gm25045 9 72121806 to 72121904 98 - snRNA gene predicted gene, 25045
Gm7863 9 72128587 to 72129391 804 + pseudogene predicted gene 7863
Cpgi22013 9 72132631 to 72133783 1152 CpG island CpG island 22013
D9Mit75 9 72153056 to 72153196 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 75
Tssr90482 9 72154322 to 72154346 24 - TSS region transcription start site region 90482
Uba52-ps 9 72174580 to 72174958 378 - pseudogene ubitquitin A-52 residue ribosomal protein fusion product 1, pseudogene
Tssr90483 9 72174987 to 72175004 17 - TSS region transcription start site region 90483
Gm27159 9 72179183 to 72179758 575 - lincRNA gene predicted gene 27159
Gm27188 9 72207706 to 72230306 22600 - lincRNA gene predicted gene 27188
Gm7870 9 72209555 to 72210170 615 + pseudogene predicted gene 7870
Gm25163 9 72257036 to 72257139 103 - snRNA gene predicted gene, 25163
Gm27253 9 72268614 to 72274856 6242 - lincRNA gene predicted gene 27253
Tssr90484 9 72271324 to 72271327 3 - TSS region transcription start site region 90484
Cpgi22014 9 72274515 to 72275732 1217 CpG island CpG island 22014
Tssr85968 9 72274873 to 72274886 13 + TSS region transcription start site region 85968
Zfp280d 9 72274888 to 72363779 88891 + protein coding gene zinc finger protein 280D
Tssr85969 9 72274901 to 72274913 12 + TSS region transcription start site region 85969
Tssr85970 9 72274941 to 72274950 9 + TSS region transcription start site region 85970
Tssr85971 9 72274966 to 72275013 47 + TSS region transcription start site region 85971
Tssr85972 9 72275019 to 72275026 7 + TSS region transcription start site region 85972
Tssr85973 9 72275487 to 72275499 12 + TSS region transcription start site region 85973
Tssr85974 9 72279158 to 72279163 5 + TSS region transcription start site region 85974
Tssr85975 9 72289640 to 72289646 6 + TSS region transcription start site region 85975
Gm19353 9 72289667 to 72290111 444 + pseudogene predicted gene, 19353
Gm17828 9 72292542 to 72293340 798 - pseudogene predicted gene, 17828
Tssr85976 9 72294312 to 72294315 3 + TSS region transcription start site region 85976
Tssr85977 9 72305870 to 72305876 6 + TSS region transcription start site region 85977
Tssr85978 9 72306669 to 72306679 10 + TSS region transcription start site region 85978
Gm37983 9 72315131 to 72317136 2005 + unclassified gene predicted gene, 37983
Tssr85979 9 72352366 to 72352370 4 + TSS region transcription start site region 85979
Gm37303 9 72355075 to 72356633 1558 + unclassified gene predicted gene, 37303
Gm37581 9 72357227 to 72358214 987 + unclassified gene predicted gene, 37581
Tssr85980 9 72357774 to 72357778 4 + TSS region transcription start site region 85980