Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:71561836-74644438

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366 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Bbaa9 9 57897764 to 71574472 13676708 QTL B.burgdorferi-associated arthritis 9
Myzap 9 71504347 to 71592360 88013 - protein coding gene myocardial zonula adherens protein
D9Mit73 9 71574345 to 71574472 127 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 73
Tssr85962 9 71584587 to 71584591 4 + TSS region transcription start site region 85962
Tssr90443 9 71589202 to 71589204 2 - TSS region transcription start site region 90443
Tssr85963 9 71591365 to 71591370 5 + TSS region transcription start site region 85963
Tssr85964 9 71591485 to 71591498 13 + TSS region transcription start site region 85964
Cpgi22008 9 71592057 to 71592415 358 CpG island CpG island 22008
Tssr90444 9 71592283 to 71592297 14 - TSS region transcription start site region 90444
Tssr90445 9 71592312 to 71592343 31 - TSS region transcription start site region 90445
Tssr90446 9 71592346 to 71592372 26 - TSS region transcription start site region 90446
Tssr90447 9 71592380 to 71592387 7 - TSS region transcription start site region 90447
Gm6018 9 71598835 to 71600140 1305 - pseudogene predicted gene 6018
Gm2828 9 71601791 to 71603844 2053 - pseudogene predicted gene 2828
Cpgi22009 9 71602140 to 71602336 196 CpG island CpG island 22009
Cgnl1 9 71626509 to 71771602 145093 - protein coding gene cingulin-like 1
Tssr90448 9 71631086 to 71631100 14 - TSS region transcription start site region 90448
Tssr90449 9 71631101 to 71631115 14 - TSS region transcription start site region 90449
Tssr90450 9 71631133 to 71631142 9 - TSS region transcription start site region 90450
Tgl7 9 71652678 to 71652678 0 QTL triglyceride 7
Tssr90451 9 71663394 to 71663398 4 - TSS region transcription start site region 90451
Tssr85965 9 71698916 to 71698925 9 + TSS region transcription start site region 85965
D9Mit210 9 71710730 to 71710921 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 210
D9Mit267 9 71712562 to 71712685 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 267
Tssr90452 9 71719349 to 71719359 10 - TSS region transcription start site region 90452
Tssr90453 9 71723567 to 71723578 11 - TSS region transcription start site region 90453
Tssr90454 9 71724543 to 71724556 13 - TSS region transcription start site region 90454
D9Dcr9 9 71755218 to 71755312 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 9
D9Mit155 9 71755218 to 71755319 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 155
Cpgi22010 9 71771072 to 71771981 909 CpG island CpG island 22010
Tssr90455 9 71771535 to 71771601 66 - TSS region transcription start site region 90455
Cpgi22011 9 71801393 to 71801779 386 CpG island CpG island 22011
Gm27220 9 71827276 to 71827537 261 - pseudogene predicted gene 27220
Gm37660 9 71840005 to 71841736 1731 - unclassified gene predicted gene, 37660
Tcf12 9 71844252 to 72111819 267567 - protein coding gene transcription factor 12
Gm38057 9 71852001 to 71855203 3202 - unclassified gene predicted gene, 38057
Tssr90456 9 71896047 to 71896102 55 - TSS region transcription start site region 90456
Tssr90457 9 71896103 to 71896108 5 - TSS region transcription start site region 90457
Tssr2932 9 71896115 to 71896116 1 - TSS region transcription start site region 2932
Gm38111 9 71896713 to 71899453 2740 - unclassified gene predicted gene, 38111
Gm18821 9 71908846 to 71909550 704 + pseudogene predicted gene, 18821
5830443J22Rik 9 71910495 to 71911654 1159 unclassified gene RIKEN cDNA 5830443J22 gene
E430034C17Rik 9 71924123 to 71925768 1645 unclassified gene RIKEN cDNA E430034C17 gene
Gm37879 9 71939591 to 71941585 1994 - unclassified gene predicted gene, 37879
Gm27152 9 71948879 to 71948977 98 + pseudogene predicted gene 27152
Tssr90458 9 71975975 to 71975980 5 - TSS region transcription start site region 90458
Tssr90459 9 71976119 to 71976121 2 - TSS region transcription start site region 90459
2810043O03Rik 9 71983827 to 71985672 1845 unclassified gene RIKEN cDNA 2810043O03 gene
Gm37663 9 71988973 to 71991271 2298 - unclassified gene predicted gene, 37663
Tssr90460 9 71996304 to 71996307 3 - TSS region transcription start site region 90460
Tssr90461 9 71996637 to 71996641 4 - TSS region transcription start site region 90461
Tssr90462 9 71997250 to 71997260 10 - TSS region transcription start site region 90462
Gm37023 9 72001378 to 72003803 2425 - unclassified gene predicted gene, 37023
Tssr90463 9 72008011 to 72008016 5 - TSS region transcription start site region 90463
Tssr90464 9 72010472 to 72010476 4 - TSS region transcription start site region 90464
A430027C01Rik 9 72011376 to 72013019 1643 - unclassified gene RIKEN cDNA A430027C01 gene
Tssr90465 9 72017211 to 72017215 4 - TSS region transcription start site region 90465
Tssr90466 9 72028505 to 72028509 4 - TSS region transcription start site region 90466
Gm27450 9 72033198 to 72033287 89 + miRNA gene predicted gene, 27450
Tssr90467 9 72034989 to 72034993 4 - TSS region transcription start site region 90467
Gm37137 9 72040552 to 72043235 2683 - unclassified gene predicted gene, 37137
Tssr90468 9 72047075 to 72047081 6 - TSS region transcription start site region 90468
Tssr85966 9 72060896 to 72060897 1 + TSS region transcription start site region 85966
Rpl15-ps2 9 72060937 to 72061549 612 + pseudogene ribosomal protein L15, pseudogene 2
Tssr90469 9 72077487 to 72077501 14 - TSS region transcription start site region 90469
Tssr90470 9 72084748 to 72084752 4 - TSS region transcription start site region 90470
Tssr90471 9 72090254 to 72090287 33 - TSS region transcription start site region 90471
Tssr90472 9 72090394 to 72090398 4 - TSS region transcription start site region 90472
Tssr90473 9 72099376 to 72099380 4 - TSS region transcription start site region 90473
Cpgi22012 9 72110589 to 72112464 1875 CpG island CpG island 22012
Tssr90474 9 72110820 to 72110831 11 - TSS region transcription start site region 90474
Tssr90475 9 72110834 to 72110870 36 - TSS region transcription start site region 90475
Tssr90476 9 72110873 to 72110916 43 - TSS region transcription start site region 90476
Tssr90477 9 72110988 to 72110997 9 - TSS region transcription start site region 90477
Tssr90478 9 72111172 to 72111225 53 - TSS region transcription start site region 90478
Tssr85967 9 72111181 to 72111196 15 + TSS region transcription start site region 85967
Tssr90479 9 72111701 to 72111712 11 - TSS region transcription start site region 90479
Tssr90480 9 72111755 to 72111817 62 - TSS region transcription start site region 90480
Tssr90481 9 72111827 to 72111895 68 - TSS region transcription start site region 90481
Gm25045 9 72121806 to 72121904 98 - snRNA gene predicted gene, 25045
Gm7863 9 72128587 to 72129391 804 + pseudogene predicted gene 7863
Cpgi22013 9 72132631 to 72133783 1152 CpG island CpG island 22013
D9Mit75 9 72153056 to 72153196 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 75
Tssr90482 9 72154322 to 72154346 24 - TSS region transcription start site region 90482
Uba52-ps 9 72174580 to 72174958 378 - pseudogene ubitquitin A-52 residue ribosomal protein fusion product 1, pseudogene
Tssr90483 9 72174987 to 72175004 17 - TSS region transcription start site region 90483
Gm27159 9 72179183 to 72179758 575 - lincRNA gene predicted gene 27159
Gm27188 9 72207706 to 72230306 22600 - lincRNA gene predicted gene 27188
Gm7870 9 72209555 to 72210170 615 + pseudogene predicted gene 7870
Gm25163 9 72257036 to 72257139 103 - snRNA gene predicted gene, 25163
Gm27253 9 72268614 to 72274856 6242 - lincRNA gene predicted gene 27253
Tssr90484 9 72271324 to 72271327 3 - TSS region transcription start site region 90484
Cpgi22014 9 72274515 to 72275732 1217 CpG island CpG island 22014
Tssr85968 9 72274873 to 72274886 13 + TSS region transcription start site region 85968
Zfp280d 9 72274888 to 72363779 88891 + protein coding gene zinc finger protein 280D
Tssr85969 9 72274901 to 72274913 12 + TSS region transcription start site region 85969
Tssr85970 9 72274941 to 72274950 9 + TSS region transcription start site region 85970
Tssr85971 9 72274966 to 72275013 47 + TSS region transcription start site region 85971
Tssr85972 9 72275019 to 72275026 7 + TSS region transcription start site region 85972
Tssr85973 9 72275487 to 72275499 12 + TSS region transcription start site region 85973
Tssr85974 9 72279158 to 72279163 5 + TSS region transcription start site region 85974
Tssr85975 9 72289640 to 72289646 6 + TSS region transcription start site region 85975
Gm19353 9 72289667 to 72290111 444 + pseudogene predicted gene, 19353
Gm17828 9 72292542 to 72293340 798 - pseudogene predicted gene, 17828
Tssr85976 9 72294312 to 72294315 3 + TSS region transcription start site region 85976
Tssr85977 9 72305870 to 72305876 6 + TSS region transcription start site region 85977
Tssr85978 9 72306669 to 72306679 10 + TSS region transcription start site region 85978
Gm37983 9 72315131 to 72317136 2005 + unclassified gene predicted gene, 37983
Tssr85979 9 72352366 to 72352370 4 + TSS region transcription start site region 85979
Gm37303 9 72355075 to 72356633 1558 + unclassified gene predicted gene, 37303
Gm37581 9 72357227 to 72358214 987 + unclassified gene predicted gene, 37581
Tssr85980 9 72357774 to 72357778 4 + TSS region transcription start site region 85980
Gm10641 9 72384388 to 72387141 2753 unclassified non-coding RNA gene predicted gene 10641
Gm37150 9 72384389 to 72387142 2753 + unclassified gene predicted gene, 37150
Tssr85981 9 72389942 to 72389945 3 + TSS region transcription start site region 85981
Tssr90485 9 72393870 to 72393879 9 - TSS region transcription start site region 90485
Tssr90486 9 72393882 to 72393895 13 - TSS region transcription start site region 90486
Tssr90487 9 72393960 to 72393970 10 - TSS region transcription start site region 90487
Tssr85982 9 72394034 to 72394052 18 + TSS region transcription start site region 85982
Tssr85983 9 72394113 to 72394127 14 + TSS region transcription start site region 85983
Tssr85984 9 72394136 to 72394148 12 + TSS region transcription start site region 85984
Tssr85985 9 72394348 to 72394351 3 + TSS region transcription start site region 85985
Tssr85986 9 72395959 to 72395975 16 + TSS region transcription start site region 85986
Gm27230 9 72395974 to 72404510 8536 + lncRNA gene predicted gene 27230
Tssr85987 9 72396259 to 72396279 20 + TSS region transcription start site region 85987
Tssr85988 9 72396300 to 72396318 18 + TSS region transcription start site region 85988
Tssr85989 9 72396327 to 72396345 18 + TSS region transcription start site region 85989
Tssr85990 9 72396352 to 72396363 11 + TSS region transcription start site region 85990
Tssr90488 9 72400235 to 72400248 13 - TSS region transcription start site region 90488
Tssr85991 9 72400343 to 72400352 9 + TSS region transcription start site region 85991
Tssr85992 9 72400392 to 72400414 22 + TSS region transcription start site region 85992
Tssr85993 9 72400424 to 72400434 10 + TSS region transcription start site region 85993
Tssr85994 9 72401742 to 72401745 3 + TSS region transcription start site region 85994
Tssr90489 9 72403640 to 72403654 14 - TSS region transcription start site region 90489
Tssr90490 9 72407114 to 72407125 11 - TSS region transcription start site region 90490
Tssr85995 9 72408565 to 72408574 9 + TSS region transcription start site region 85995
Tssr85996 9 72408586 to 72408593 7 + TSS region transcription start site region 85996
BC065403 9 72408644 to 72409867 1223 - antisense lncRNA gene cDNA sequence BC065403
Gm27255 9 72409268 to 72409878 610 + lincRNA gene predicted gene 27255
Tssr90491 9 72409772 to 72409822 50 - TSS region transcription start site region 90491
Gm27254 9 72431127 to 72431643 516 - pseudogene predicted gene 27254
Tssr85997 9 72437985 to 72438016 31 + TSS region transcription start site region 85997
Cpgi22015 9 72438018 to 72438722 704 CpG island CpG island 22015
Mns1 9 72438517 to 72458581 20064 + protein coding gene meiosis-specific nuclear structural protein 1
Tssr85998 9 72438519 to 72438533 14 + TSS region transcription start site region 85998
Tssr85999 9 72438534 to 72438578 44 + TSS region transcription start site region 85999
Tssr86000 9 72438579 to 72438598 19 + TSS region transcription start site region 86000
Tssr86001 9 72438609 to 72438616 7 + TSS region transcription start site region 86001
Tssr86002 9 72438843 to 72438846 3 + TSS region transcription start site region 86002
Gm36948 9 72440760 to 72444006 3246 + unclassified gene predicted gene, 36948
Gm27231 9 72441079 to 72441779 700 - antisense lncRNA gene predicted gene 27231
Tssr86003 9 72442255 to 72442261 6 + TSS region transcription start site region 86003
D9Dcr10 9 72444021 to 72444116 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 10
Tssr86004 9 72448618 to 72448632 14 + TSS region transcription start site region 86004
Tssr86005 9 72448701 to 72448712 11 + TSS region transcription start site region 86005
Gm39370 9 72452826 to 72456539 3713 - lncRNA gene predicted gene, 39370
Tex9 9 72458055 to 72492686 34631 - protein coding gene testis expressed gene 9
Tssr86006 9 72461794 to 72461798 4 + TSS region transcription start site region 86006
Gm33004 9 72488082 to 72522201 34119 + lncRNA gene predicted gene, 33004
Cpgi22016 9 72491676 to 72492159 483 CpG island CpG island 22016
Tssr90492 9 72491950 to 72491989 39 - TSS region transcription start site region 90492
Tssr86007 9 72492041 to 72492067 26 + TSS region transcription start site region 86007
Tssr90493 9 72510937 to 72510946 9 - TSS region transcription start site region 90493
Tssr90494 9 72510957 to 72510969 12 - TSS region transcription start site region 90494
Gm28010 9 72511209 to 72511334 125 - miRNA gene predicted gene, 28010
4930509E16Rik 9 72518250 to 72531858 13608 - lincRNA gene RIKEN cDNA 4930509E16 gene
Cpgi22017 9 72531468 to 72533170 1702 CpG island CpG island 22017
Tssr86008 9 72531728 to 72531757 29 + TSS region transcription start site region 86008
Tssr86009 9 72531933 to 72531950 17 + TSS region transcription start site region 86009
Tssr86010 9 72532184 to 72532207 23 + TSS region transcription start site region 86010
Tssr86011 9 72532214 to 72532271 57 + TSS region transcription start site region 86011
Rfx7 9 72532240 to 72622937 90697 + protein coding gene regulatory factor X, 7
Tssr86012 9 72532787 to 72532828 41 + TSS region transcription start site region 86012
Tssr2933 9 72536410 to 72536414 4 + TSS region transcription start site region 2933
Tssr86013 9 72537744 to 72537748 4 + TSS region transcription start site region 86013
Tssr86014 9 72551122 to 72551126 4 + TSS region transcription start site region 86014
Gm19427 9 72551728 to 72551935 207 + pseudogene predicted gene, 19427
Tssr86015 9 72570795 to 72570809 14 + TSS region transcription start site region 86015
Tssr86016 9 72581386 to 72581389 3 + TSS region transcription start site region 86016
Gm37105 9 72594923 to 72597007 2084 + unclassified gene predicted gene, 37105
Gm18014 9 72606411 to 72607161 750 - pseudogene predicted gene, 18014
Gm27241 9 72613790 to 72617053 3263 - antisense lncRNA gene predicted gene 27241
Gm27232 9 72618693 to 72619520 827 - antisense lncRNA gene predicted gene 27232
Tssr86017 9 72620445 to 72620447 2 + TSS region transcription start site region 86017
Gm23057 9 72633447 to 72633553 106 + snRNA gene predicted gene, 23057
Cpgi22018 9 72661626 to 72663414 1788 CpG island CpG island 22018
Tssr86018 9 72661981 to 72662012 31 + TSS region transcription start site region 86018
Nedd4 9 72662347 to 72749848 87501 + protein coding gene neural precursor cell expressed, developmentally down-regulated 4
Tssr86019 9 72662401 to 72662412 11 + TSS region transcription start site region 86019
Tssr86020 9 72662420 to 72662468 48 + TSS region transcription start site region 86020
Tssr86021 9 72662473 to 72662523 50 + TSS region transcription start site region 86021
Tssr90495 9 72663250 to 72663270 20 - TSS region transcription start site region 90495
Tssr90496 9 72663286 to 72663297 11 - TSS region transcription start site region 90496
Tssr90497 9 72663304 to 72663326 22 - TSS region transcription start site region 90497
Tssr86022 9 72663755 to 72663769 14 + TSS region transcription start site region 86022
Tssr86023 9 72669984 to 72670004 20 + TSS region transcription start site region 86023
Tssr86024 9 72670032 to 72670056 24 + TSS region transcription start site region 86024
Tssr86025 9 72670057 to 72670080 23 + TSS region transcription start site region 86025
Tssr86026 9 72671247 to 72671273 26 + TSS region transcription start site region 86026