Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:71146791-72058844

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa9 9 57897764 to 71574472 13676708 QTL B.burgdorferi-associated arthritis 9
Aqp9 9 71110659 to 71168085 57426 - protein coding gene aquaporin 9
Gm32714 9 71150691 to 71159644 8953 + lncRNA gene predicted gene, 32714
Tssr85955 9 71157343 to 71157373 30 + TSS region transcription start site region 85955
Tssr85956 9 71157406 to 71157416 10 + TSS region transcription start site region 85956
Tssr90429 9 71163088 to 71163100 12 - TSS region transcription start site region 90429
Tssr90430 9 71163224 to 71163293 69 - TSS region transcription start site region 90430
Tssr90431 9 71163295 to 71163315 20 - TSS region transcription start site region 90431
Tssr90432 9 71163353 to 71163364 11 - TSS region transcription start site region 90432
Tssr90433 9 71165204 to 71165222 18 - TSS region transcription start site region 90433
Tssr2927 9 71165335 to 71165345 10 + TSS region transcription start site region 2927
Tssr90434 9 71168671 to 71168683 12 - TSS region transcription start site region 90434
Tssr90435 9 71168687 to 71168698 11 - TSS region transcription start site region 90435
Gm32511 9 71168776 to 71208122 39346 + antisense lncRNA gene predicted gene, 32511
Cpgi22005 9 71169210 to 71169369 159 CpG island CpG island 22005
Gm3458 9 71211913 to 71215386 3473 - lncRNA gene predicted gene 3458
Cpgi22006 9 71215197 to 71216692 1495 CpG island CpG island 22006
Tssr90436 9 71215325 to 71215336 11 - TSS region transcription start site region 90436
Tssr2928 9 71215367 to 71215380 13 + TSS region transcription start site region 2928
Tssr90437 9 71215372 to 71215389 17 - TSS region transcription start site region 90437
Tssr85957 9 71215779 to 71215792 13 + TSS region transcription start site region 85957
Aldh1a2 9 71215789 to 71296243 80454 + protein coding gene aldehyde dehydrogenase family 1, subfamily A2
Tssr85958 9 71215807 to 71215831 24 + TSS region transcription start site region 85958
Tssr2929 9 71215842 to 71215851 9 + TSS region transcription start site region 2929
Gm48124 9 71278774 to 71279185 411 - pseudogene predicted gene, 48124
Tssr85959 9 71293652 to 71293658 6 + TSS region transcription start site region 85959
Gm32769 9 71371254 to 71373370 2116 - lncRNA gene predicted gene, 32769
Tssr2930 9 71395687 to 71395688 1 - TSS region transcription start site region 2930
Tssr85960 9 71451203 to 71451229 26 + TSS region transcription start site region 85960
Polr2m 9 71478437 to 71485935 7498 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide M
Tssr90438 9 71481411 to 71481435 24 - TSS region transcription start site region 90438
Cpgi22007 9 71485330 to 71486112 782 CpG island CpG island 22007
Tssr90439 9 71485500 to 71485570 70 - TSS region transcription start site region 90439
Tssr2931 9 71485857 to 71485873 16 + TSS region transcription start site region 2931
Tssr90440 9 71485876 to 71485887 11 - TSS region transcription start site region 90440
Tssr90441 9 71485893 to 71485975 82 - TSS region transcription start site region 90441
Tssr85961 9 71486058 to 71486075 17 + TSS region transcription start site region 85961
Myzap 9 71504347 to 71592360 88013 - protein coding gene myocardial zonula adherens protein
Tssr90442 9 71554979 to 71554983 4 - TSS region transcription start site region 90442
D9Mit73 9 71574345 to 71574472 127 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 73
Tssr85962 9 71584587 to 71584591 4 + TSS region transcription start site region 85962
Tssr90443 9 71589202 to 71589204 2 - TSS region transcription start site region 90443
Tssr85963 9 71591365 to 71591370 5 + TSS region transcription start site region 85963
Tssr85964 9 71591485 to 71591498 13 + TSS region transcription start site region 85964
Cpgi22008 9 71592057 to 71592415 358 CpG island CpG island 22008
Tssr90444 9 71592283 to 71592297 14 - TSS region transcription start site region 90444
Tssr90445 9 71592312 to 71592343 31 - TSS region transcription start site region 90445
Tssr90446 9 71592346 to 71592372 26 - TSS region transcription start site region 90446
Tssr90447 9 71592380 to 71592387 7 - TSS region transcription start site region 90447
Gm6018 9 71598835 to 71600140 1305 - pseudogene predicted gene 6018
Gm2828 9 71601791 to 71603844 2053 - pseudogene predicted gene 2828
Cpgi22009 9 71602140 to 71602336 196 CpG island CpG island 22009
Cgnl1 9 71626509 to 71771602 145093 - protein coding gene cingulin-like 1
Tssr90448 9 71631086 to 71631100 14 - TSS region transcription start site region 90448
Tssr90449 9 71631101 to 71631115 14 - TSS region transcription start site region 90449
Tssr90450 9 71631133 to 71631142 9 - TSS region transcription start site region 90450
Tgl7 9 71652678 to 71652678 0 QTL triglyceride 7
Tssr90451 9 71663394 to 71663398 4 - TSS region transcription start site region 90451
Tssr85965 9 71698916 to 71698925 9 + TSS region transcription start site region 85965
D9Mit210 9 71710730 to 71710921 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 210
D9Mit267 9 71712562 to 71712685 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 267
Tssr90452 9 71719349 to 71719359 10 - TSS region transcription start site region 90452
Tssr90453 9 71723567 to 71723578 11 - TSS region transcription start site region 90453
Tssr90454 9 71724543 to 71724556 13 - TSS region transcription start site region 90454
D9Dcr9 9 71755218 to 71755312 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 9
D9Mit155 9 71755218 to 71755319 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 155
Cpgi22010 9 71771072 to 71771981 909 CpG island CpG island 22010
Tssr90455 9 71771535 to 71771601 66 - TSS region transcription start site region 90455
Cpgi22011 9 71801393 to 71801779 386 CpG island CpG island 22011
Gm27220 9 71827276 to 71827537 261 - pseudogene predicted gene 27220
Gm37660 9 71840005 to 71841736 1731 - unclassified gene predicted gene, 37660
Tcf12 9 71844252 to 72111819 267567 - protein coding gene transcription factor 12
Gm38057 9 71852001 to 71855203 3202 - unclassified gene predicted gene, 38057
Tssr90456 9 71896047 to 71896102 55 - TSS region transcription start site region 90456
Tssr90457 9 71896103 to 71896108 5 - TSS region transcription start site region 90457
Tssr2932 9 71896115 to 71896116 1 - TSS region transcription start site region 2932
Gm38111 9 71896713 to 71899453 2740 - unclassified gene predicted gene, 38111
Gm18821 9 71908846 to 71909550 704 + pseudogene predicted gene, 18821
5830443J22Rik 9 71910495 to 71911654 1159 unclassified gene RIKEN cDNA 5830443J22 gene
E430034C17Rik 9 71924123 to 71925768 1645 unclassified gene RIKEN cDNA E430034C17 gene
Gm37879 9 71939591 to 71941585 1994 - unclassified gene predicted gene, 37879
Gm27152 9 71948879 to 71948977 98 + pseudogene predicted gene 27152
Tssr90458 9 71975975 to 71975980 5 - TSS region transcription start site region 90458
Tssr90459 9 71976119 to 71976121 2 - TSS region transcription start site region 90459
2810043O03Rik 9 71983827 to 71985672 1845 unclassified gene RIKEN cDNA 2810043O03 gene
Gm37663 9 71988973 to 71991271 2298 - unclassified gene predicted gene, 37663
Tssr90460 9 71996304 to 71996307 3 - TSS region transcription start site region 90460
Tssr90461 9 71996637 to 71996641 4 - TSS region transcription start site region 90461
Tssr90462 9 71997250 to 71997260 10 - TSS region transcription start site region 90462
Gm37023 9 72001378 to 72003803 2425 - unclassified gene predicted gene, 37023
Tssr90463 9 72008011 to 72008016 5 - TSS region transcription start site region 90463
Tssr90464 9 72010472 to 72010476 4 - TSS region transcription start site region 90464
A430027C01Rik 9 72011376 to 72013019 1643 - unclassified gene RIKEN cDNA A430027C01 gene
Tssr90465 9 72017211 to 72017215 4 - TSS region transcription start site region 90465
Tssr90466 9 72028505 to 72028509 4 - TSS region transcription start site region 90466
Gm27450 9 72033198 to 72033287 89 + miRNA gene predicted gene, 27450
Tssr90467 9 72034989 to 72034993 4 - TSS region transcription start site region 90467
Gm37137 9 72040552 to 72043235 2683 - unclassified gene predicted gene, 37137
Tssr90468 9 72047075 to 72047081 6 - TSS region transcription start site region 90468