Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:71048774-71509185

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr85954 9 71069148 to 71069152 4 + TSS region transcription start site region 85954
Gm46120 9 71069154 to 71076525 7371 + lncRNA gene predicted gene, 46120
Aqp9 9 71110659 to 71168085 57426 - protein coding gene aquaporin 9
Gm47268 9 71126842 to 71127544 702 + pseudogene predicted gene, 47268
Gm32714 9 71150691 to 71159644 8953 + lncRNA gene predicted gene, 32714
Tssr85955 9 71157343 to 71157373 30 + TSS region transcription start site region 85955
Tssr85956 9 71157406 to 71157416 10 + TSS region transcription start site region 85956
Tssr90429 9 71163088 to 71163100 12 - TSS region transcription start site region 90429
Tssr90430 9 71163224 to 71163293 69 - TSS region transcription start site region 90430
Tssr90431 9 71163295 to 71163315 20 - TSS region transcription start site region 90431
Tssr90432 9 71163353 to 71163364 11 - TSS region transcription start site region 90432
Tssr90433 9 71165204 to 71165222 18 - TSS region transcription start site region 90433
Tssr2927 9 71165335 to 71165345 10 + TSS region transcription start site region 2927
Tssr90434 9 71168671 to 71168683 12 - TSS region transcription start site region 90434
Tssr90435 9 71168687 to 71168698 11 - TSS region transcription start site region 90435
Gm32511 9 71168776 to 71208122 39346 + antisense lncRNA gene predicted gene, 32511
Cpgi22005 9 71169210 to 71169369 159 CpG island CpG island 22005
Gm3458 9 71211913 to 71215386 3473 - lncRNA gene predicted gene 3458
Cpgi22006 9 71215197 to 71216692 1495 CpG island CpG island 22006
Tssr90436 9 71215325 to 71215336 11 - TSS region transcription start site region 90436
Tssr2928 9 71215367 to 71215380 13 + TSS region transcription start site region 2928
Tssr90437 9 71215372 to 71215389 17 - TSS region transcription start site region 90437
Tssr85957 9 71215779 to 71215792 13 + TSS region transcription start site region 85957
Aldh1a2 9 71215789 to 71296243 80454 + protein coding gene aldehyde dehydrogenase family 1, subfamily A2
Tssr85958 9 71215807 to 71215831 24 + TSS region transcription start site region 85958
Tssr2929 9 71215842 to 71215851 9 + TSS region transcription start site region 2929
Gm48124 9 71278774 to 71279185 411 - pseudogene predicted gene, 48124
Tssr85959 9 71293652 to 71293658 6 + TSS region transcription start site region 85959
Gm32769 9 71371254 to 71373370 2116 - lncRNA gene predicted gene, 32769
Tssr2930 9 71395687 to 71395688 1 - TSS region transcription start site region 2930
Tssr85960 9 71451203 to 71451229 26 + TSS region transcription start site region 85960
Polr2m 9 71478437 to 71485935 7498 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide M
Tssr90438 9 71481411 to 71481435 24 - TSS region transcription start site region 90438
Cpgi22007 9 71485330 to 71486112 782 CpG island CpG island 22007
Tssr90439 9 71485500 to 71485570 70 - TSS region transcription start site region 90439
Tssr2931 9 71485857 to 71485873 16 + TSS region transcription start site region 2931
Tssr90440 9 71485876 to 71485887 11 - TSS region transcription start site region 90440
Tssr90441 9 71485893 to 71485975 82 - TSS region transcription start site region 90441
Tssr85961 9 71486058 to 71486075 17 + TSS region transcription start site region 85961
Myzap 9 71504347 to 71592360 88013 - protein coding gene myocardial zonula adherens protein