Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:70363353-71963364

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa9 9 57897764 to 71574472 13676708 QTL B.burgdorferi-associated arthritis 9
Myo1e 9 70207350 to 70399766 192416 + protein coding gene myosin IE
Tssr85899 9 70370406 to 70370418 12 + TSS region transcription start site region 85899
Tssr2924 9 70389751 to 70389753 2 + TSS region transcription start site region 2924
Tssr85900 9 70398852 to 70398871 19 + TSS region transcription start site region 85900
Tssr85901 9 70399323 to 70399349 26 + TSS region transcription start site region 85901
Tssr85902 9 70399355 to 70399394 39 + TSS region transcription start site region 85902
Tssr85903 9 70399420 to 70399431 11 + TSS region transcription start site region 85903
Mir5626 9 70405694 to 70405753 59 - miRNA gene microRNA 5626
Ccnb2 9 70407692 to 70421547 13855 - protein coding gene cyclin B2
Tssr90405 9 70413233 to 70413274 41 - TSS region transcription start site region 90405
Cpgi22000 9 70421166 to 70421713 547 CpG island CpG island 22000
Tssr90406 9 70421491 to 70421529 38 - TSS region transcription start site region 90406
Tssr90407 9 70421533 to 70421592 59 - TSS region transcription start site region 90407
Rnf111 9 70425424 to 70503725 78301 - protein coding gene ring finger 111
Tssr90408 9 70455669 to 70455673 4 - TSS region transcription start site region 90408
Tssr90409 9 70457883 to 70457899 16 - TSS region transcription start site region 90409
Gm24615 9 70475484 to 70475596 112 + snoRNA gene predicted gene, 24615
Tssr90410 9 70484802 to 70484811 9 - TSS region transcription start site region 90410
Tssr90411 9 70488117 to 70488120 3 - TSS region transcription start site region 90411
Cpgi22001 9 70502962 to 70504029 1067 CpG island CpG island 22001
Tssr90412 9 70503329 to 70503378 49 - TSS region transcription start site region 90412
Tssr90413 9 70503718 to 70503805 87 - TSS region transcription start site region 90413
Tssr85904 9 70512207 to 70512220 13 + TSS region transcription start site region 85904
Tssr85905 9 70512224 to 70512244 20 + TSS region transcription start site region 85905
Gm23588 9 70517200 to 70517298 98 + snRNA gene predicted gene, 23588
Gm23730 9 70521598 to 70521704 106 - snRNA gene predicted gene, 23730
Tssr85906 9 70526880 to 70526892 12 + TSS region transcription start site region 85906
Gm22229 9 70537814 to 70537921 107 + snRNA gene predicted gene, 22229
Cpgi22002 9 70542209 to 70543503 1294 CpG island CpG island 22002
Tssr85907 9 70542393 to 70542416 23 + TSS region transcription start site region 85907
Tssr90414 9 70542679 to 70542691 12 - TSS region transcription start site region 90414
Tssr85908 9 70542742 to 70542827 85 + TSS region transcription start site region 85908
Sltm 9 70542754 to 70592234 49480 + protein coding gene SAFB-like, transcription modulator
Tssr85909 9 70542848 to 70542870 22 + TSS region transcription start site region 85909
Tssr85910 9 70542872 to 70542920 48 + TSS region transcription start site region 85910
Tssr85911 9 70543045 to 70543056 11 + TSS region transcription start site region 85911
Tssr90415 9 70543160 to 70543174 14 - TSS region transcription start site region 90415
Tssr85912 9 70543212 to 70543226 14 + TSS region transcription start site region 85912
Tssr85913 9 70543234 to 70543247 13 + TSS region transcription start site region 85913
9030411K21Rik 9 70549444 to 70550713 1269 unclassified non-coding RNA gene RIKEN cDNA 9030411K21 gene
Tssr85914 9 70573607 to 70573616 9 + TSS region transcription start site region 85914
Tssr85915 9 70576718 to 70576731 13 + TSS region transcription start site region 85915
Tssr85916 9 70576737 to 70576760 23 + TSS region transcription start site region 85916
Tssr85917 9 70576769 to 70576795 26 + TSS region transcription start site region 85917
Tssr85918 9 70579317 to 70579331 14 + TSS region transcription start site region 85918
Tssr85919 9 70579372 to 70579386 14 + TSS region transcription start site region 85919
Tssr85920 9 70580253 to 70580291 38 + TSS region transcription start site region 85920
Tssr85921 9 70580775 to 70580787 12 + TSS region transcription start site region 85921
Tssr85922 9 70580823 to 70580834 11 + TSS region transcription start site region 85922
Tssr85923 9 70581320 to 70581337 17 + TSS region transcription start site region 85923
Tssr90416 9 70585236 to 70585262 26 - TSS region transcription start site region 90416
Mindy2 9 70599014 to 70657174 58160 - protein coding gene MINDY lysine 48 deubiquitinase 2
Tssr90417 9 70623691 to 70623706 15 - TSS region transcription start site region 90417
Tssr90418 9 70641400 to 70641403 3 - TSS region transcription start site region 90418
Tssr90419 9 70656134 to 70656138 4 - TSS region transcription start site region 90419
Tssr85924 9 70656229 to 70656245 16 + TSS region transcription start site region 85924
Tssr85925 9 70656248 to 70656261 13 + TSS region transcription start site region 85925
Gm10642 9 70656251 to 70657860 1609 + protein coding gene predicted gene 10642
Cpgi22003 9 70656318 to 70657727 1409 CpG island CpG island 22003
Tssr90420 9 70657121 to 70657188 67 - TSS region transcription start site region 90420
Gm31872 9 70657230 to 70668759 11529 + lncRNA gene predicted gene, 31872
Tssr90421 9 70657235 to 70657248 13 - TSS region transcription start site region 90421
Tssr85926 9 70658158 to 70658160 2 + TSS region transcription start site region 85926
Tssr85927 9 70658532 to 70658537 5 + TSS region transcription start site region 85927
Cpgi22004 9 70678602 to 70679999 1397 CpG island CpG island 22004
Tssr85928 9 70678950 to 70679010 60 + TSS region transcription start site region 85928
Adam10 9 70678997 to 70780229 101232 + protein coding gene a disintegrin and metallopeptidase domain 10
Tssr85929 9 70679021 to 70679116 95 + TSS region transcription start site region 85929
Tssr85930 9 70679129 to 70679140 11 + TSS region transcription start site region 85930
Tssr90422 9 70692013 to 70692040 27 - TSS region transcription start site region 90422
Tssr85931 9 70710039 to 70710040 1 + TSS region transcription start site region 85931
Cycs-ps1 9 70711380 to 70712249 869 + pseudogene cytochrome c, pseudogene 1
Tssr85932 9 70729910 to 70729912 2 + TSS region transcription start site region 85932
Tssr85933 9 70748192 to 70748206 14 + TSS region transcription start site region 85933
Tssr85934 9 70754168 to 70754180 12 + TSS region transcription start site region 85934
Tssr2925 9 70768713 to 70768721 8 + TSS region transcription start site region 2925
Tssr85935 9 70768803 to 70768817 14 + TSS region transcription start site region 85935
Tssr85936 9 70779118 to 70779144 26 + TSS region transcription start site region 85936
Tssr85937 9 70779538 to 70779560 22 + TSS region transcription start site region 85937
Lipc 9 70798128 to 70952221 154093 - protein coding gene lipase, hepatic
Gm25149 9 70799556 to 70799637 81 - miRNA gene predicted gene, 25149
Tssr90423 9 70816979 to 70816994 15 - TSS region transcription start site region 90423
Tssr85938 9 70835118 to 70835126 8 + TSS region transcription start site region 85938
Tssr90424 9 70835180 to 70835184 4 - TSS region transcription start site region 90424
Tssr85939 9 70852545 to 70852574 29 + TSS region transcription start site region 85939
Gm3436 9 70852576 to 70853415 839 + pseudogene predicted pseudogene 3436
Tssr85940 9 70914078 to 70914088 10 + TSS region transcription start site region 85940
Tssr85941 9 70914124 to 70914164 40 + TSS region transcription start site region 85941
Tssr85942 9 70914320 to 70914325 5 + TSS region transcription start site region 85942
Tssr85943 9 70927128 to 70927130 2 + TSS region transcription start site region 85943
Tssr85944 9 70928137 to 70928151 14 + TSS region transcription start site region 85944
Tssr85945 9 70928299 to 70928307 8 + TSS region transcription start site region 85945
Tssr85946 9 70928770 to 70928779 9 + TSS region transcription start site region 85946
Gm32017 9 70930488 to 70934430 3942 + lncRNA gene predicted gene, 32017
Tssr85947 9 70931779 to 70931789 10 + TSS region transcription start site region 85947
Tssr85948 9 70932672 to 70932678 6 + TSS region transcription start site region 85948
Tssr85949 9 70934273 to 70934276 3 + TSS region transcription start site region 85949
Tssr90425 9 70934580 to 70934585 5 - TSS region transcription start site region 90425
Tssr90426 9 70934598 to 70934624 26 - TSS region transcription start site region 90426
Tssr90427 9 70934808 to 70934847 39 - TSS region transcription start site region 90427
Tssr2926 9 70942826 to 70942841 15 + TSS region transcription start site region 2926
Tssr90428 9 70952144 to 70952155 11 - TSS region transcription start site region 90428
Tssr85950 9 70956030 to 70956039 9 + TSS region transcription start site region 85950
Tssr85951 9 70956110 to 70956121 11 + TSS region transcription start site region 85951
Tssr85952 9 70956688 to 70956696 8 + TSS region transcription start site region 85952
Tssr85953 9 70956917 to 70956927 10 + TSS region transcription start site region 85953
Gm46118 9 70958410 to 70959418 1008 + lncRNA gene predicted gene, 46118
Gm32074 9 70966938 to 70980345 13407 - lncRNA gene predicted gene, 32074
Gm18013 9 70989691 to 70990239 548 - pseudogene predicted gene, 18013
D9Mit132 9 71005075 to 71005317 242 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 132
Gm46119 9 71015917 to 71028424 12507 - lncRNA gene predicted gene, 46119
Tssr85954 9 71069148 to 71069152 4 + TSS region transcription start site region 85954
Gm46120 9 71069154 to 71076525 7371 + lncRNA gene predicted gene, 46120
Aqp9 9 71110659 to 71168085 57426 - protein coding gene aquaporin 9
Gm47268 9 71126842 to 71127544 702 + pseudogene predicted gene, 47268
Gm32714 9 71150691 to 71159644 8953 + lncRNA gene predicted gene, 32714
Tssr85955 9 71157343 to 71157373 30 + TSS region transcription start site region 85955
Tssr85956 9 71157406 to 71157416 10 + TSS region transcription start site region 85956
Tssr90429 9 71163088 to 71163100 12 - TSS region transcription start site region 90429
Tssr90430 9 71163224 to 71163293 69 - TSS region transcription start site region 90430
Tssr90431 9 71163295 to 71163315 20 - TSS region transcription start site region 90431
Tssr90432 9 71163353 to 71163364 11 - TSS region transcription start site region 90432
Tssr90433 9 71165204 to 71165222 18 - TSS region transcription start site region 90433
Tssr2927 9 71165335 to 71165345 10 + TSS region transcription start site region 2927
Tssr90434 9 71168671 to 71168683 12 - TSS region transcription start site region 90434
Tssr90435 9 71168687 to 71168698 11 - TSS region transcription start site region 90435
Gm32511 9 71168776 to 71208122 39346 + antisense lncRNA gene predicted gene, 32511
Cpgi22005 9 71169210 to 71169369 159 CpG island CpG island 22005
Gm3458 9 71211913 to 71215386 3473 - lncRNA gene predicted gene 3458
Cpgi22006 9 71215197 to 71216692 1495 CpG island CpG island 22006
Tssr90436 9 71215325 to 71215336 11 - TSS region transcription start site region 90436
Tssr2928 9 71215367 to 71215380 13 + TSS region transcription start site region 2928
Tssr90437 9 71215372 to 71215389 17 - TSS region transcription start site region 90437
Tssr85957 9 71215779 to 71215792 13 + TSS region transcription start site region 85957
Aldh1a2 9 71215789 to 71296243 80454 + protein coding gene aldehyde dehydrogenase family 1, subfamily A2
Tssr85958 9 71215807 to 71215831 24 + TSS region transcription start site region 85958
Tssr2929 9 71215842 to 71215851 9 + TSS region transcription start site region 2929
Gm48124 9 71278774 to 71279185 411 - pseudogene predicted gene, 48124
Tssr85959 9 71293652 to 71293658 6 + TSS region transcription start site region 85959
Gm32769 9 71371254 to 71373370 2116 - lncRNA gene predicted gene, 32769
Tssr2930 9 71395687 to 71395688 1 - TSS region transcription start site region 2930
Tssr85960 9 71451203 to 71451229 26 + TSS region transcription start site region 85960
Polr2m 9 71478437 to 71485935 7498 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide M
Tssr90438 9 71481411 to 71481435 24 - TSS region transcription start site region 90438
Cpgi22007 9 71485330 to 71486112 782 CpG island CpG island 22007
Tssr90439 9 71485500 to 71485570 70 - TSS region transcription start site region 90439
Tssr2931 9 71485857 to 71485873 16 + TSS region transcription start site region 2931
Tssr90440 9 71485876 to 71485887 11 - TSS region transcription start site region 90440
Tssr90441 9 71485893 to 71485975 82 - TSS region transcription start site region 90441
Tssr85961 9 71486058 to 71486075 17 + TSS region transcription start site region 85961
Myzap 9 71504347 to 71592360 88013 - protein coding gene myocardial zonula adherens protein
Tssr90442 9 71554979 to 71554983 4 - TSS region transcription start site region 90442
D9Mit73 9 71574345 to 71574472 127 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 73
Tssr85962 9 71584587 to 71584591 4 + TSS region transcription start site region 85962
Tssr90443 9 71589202 to 71589204 2 - TSS region transcription start site region 90443
Tssr85963 9 71591365 to 71591370 5 + TSS region transcription start site region 85963
Tssr85964 9 71591485 to 71591498 13 + TSS region transcription start site region 85964
Cpgi22008 9 71592057 to 71592415 358 CpG island CpG island 22008
Tssr90444 9 71592283 to 71592297 14 - TSS region transcription start site region 90444
Tssr90445 9 71592312 to 71592343 31 - TSS region transcription start site region 90445
Tssr90446 9 71592346 to 71592372 26 - TSS region transcription start site region 90446
Tssr90447 9 71592380 to 71592387 7 - TSS region transcription start site region 90447
Gm6018 9 71598835 to 71600140 1305 - pseudogene predicted gene 6018
Gm2828 9 71601791 to 71603844 2053 - pseudogene predicted gene 2828
Cpgi22009 9 71602140 to 71602336 196 CpG island CpG island 22009
Cgnl1 9 71626509 to 71771602 145093 - protein coding gene cingulin-like 1
Tssr90448 9 71631086 to 71631100 14 - TSS region transcription start site region 90448
Tssr90449 9 71631101 to 71631115 14 - TSS region transcription start site region 90449
Tssr90450 9 71631133 to 71631142 9 - TSS region transcription start site region 90450
Tgl7 9 71652678 to 71652678 0 QTL triglyceride 7
Tssr90451 9 71663394 to 71663398 4 - TSS region transcription start site region 90451
Tssr85965 9 71698916 to 71698925 9 + TSS region transcription start site region 85965
D9Mit210 9 71710730 to 71710921 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 210
D9Mit267 9 71712562 to 71712685 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 267
Tssr90452 9 71719349 to 71719359 10 - TSS region transcription start site region 90452
Tssr90453 9 71723567 to 71723578 11 - TSS region transcription start site region 90453
Tssr90454 9 71724543 to 71724556 13 - TSS region transcription start site region 90454
D9Mit155 9 71755218 to 71755319 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 155
D9Dcr9 9 71755218 to 71755312 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 9
Cpgi22010 9 71771072 to 71771981 909 CpG island CpG island 22010
Tssr90455 9 71771535 to 71771601 66 - TSS region transcription start site region 90455
Cpgi22011 9 71801393 to 71801779 386 CpG island CpG island 22011
Gm27220 9 71827276 to 71827537 261 - pseudogene predicted gene 27220
Gm37660 9 71840005 to 71841736 1731 - unclassified gene predicted gene, 37660
Tcf12 9 71844252 to 72111819 267567 - protein coding gene transcription factor 12
Gm38057 9 71852001 to 71855203 3202 - unclassified gene predicted gene, 38057
Tssr90456 9 71896047 to 71896102 55 - TSS region transcription start site region 90456
Tssr90457 9 71896103 to 71896108 5 - TSS region transcription start site region 90457
Tssr2932 9 71896115 to 71896116 1 - TSS region transcription start site region 2932
Gm38111 9 71896713 to 71899453 2740 - unclassified gene predicted gene, 38111
Gm18821 9 71908846 to 71909550 704 + pseudogene predicted gene, 18821
5830443J22Rik 9 71910495 to 71911654 1159 unclassified gene RIKEN cDNA 5830443J22 gene
E430034C17Rik 9 71924123 to 71925768 1645 unclassified gene RIKEN cDNA E430034C17 gene
Gm37879 9 71939591 to 71941585 1994 - unclassified gene predicted gene, 37879
Gm27152 9 71948879 to 71948977 98 + pseudogene predicted gene 27152