Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:70017075-74077081

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562 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Bbaa9 9 57897764 to 71574472 13676708 QTL B.burgdorferi-associated arthritis 9
Gtf2a2 9 70012550 to 70022866 10316 + protein coding gene general transcription factor II A, 2
Tssr85875 9 70020251 to 70020263 12 + TSS region transcription start site region 85875
Gcnt3 9 70031496 to 70038088 6592 - protein coding gene glucosaminyl (N-acetyl) transferase 3, mucin type
Tssr90380 9 70032444 to 70032448 4 - TSS region transcription start site region 90380
Tssr90381 9 70032634 to 70032637 3 - TSS region transcription start site region 90381
Tssr90382 9 70035556 to 70035574 18 - TSS region transcription start site region 90382
Tssr90383 9 70036681 to 70036704 23 - TSS region transcription start site region 90383
Tssr90384 9 70036705 to 70036711 6 - TSS region transcription start site region 90384
Tssr90385 9 70036728 to 70036739 11 - TSS region transcription start site region 90385
Tssr90386 9 70036795 to 70036802 7 - TSS region transcription start site region 90386
Tssr90387 9 70036810 to 70036817 7 - TSS region transcription start site region 90387
Tssr90388 9 70036818 to 70036841 23 - TSS region transcription start site region 90388
Tssr90389 9 70037951 to 70037960 9 - TSS region transcription start site region 90389
Tssr90390 9 70037993 to 70038018 25 - TSS region transcription start site region 90390
Tssr90391 9 70038043 to 70038052 9 - TSS region transcription start site region 90391
Tssr90392 9 70038054 to 70038057 3 - TSS region transcription start site region 90392
Tssr90393 9 70038075 to 70038093 18 - TSS region transcription start site region 90393
Tssr90394 9 70038096 to 70038109 13 - TSS region transcription start site region 90394
Tssr90395 9 70040680 to 70040715 35 - TSS region transcription start site region 90395
Tssr85876 9 70067918 to 70067933 15 + TSS region transcription start site region 85876
Tssr85877 9 70067946 to 70067955 9 + TSS region transcription start site region 85877
Gm47233 9 70069867 to 70072034 2167 + unclassified gene predicted gene, 47233
2210414F02Rik 9 70072923 to 70073443 520 + lincRNA gene RIKEN cDNA 2210414F02 gene
Gm39369 9 70079791 to 70083046 3255 - lncRNA gene predicted gene, 39369
Fam81a 9 70088511 to 70142555 54044 - protein coding gene family with sequence similarity 81, member A
Tssr90396 9 70090252 to 70090258 6 - TSS region transcription start site region 90396
Tssr90397 9 70103075 to 70103110 35 - TSS region transcription start site region 90397
Tssr90398 9 70103117 to 70103142 25 - TSS region transcription start site region 90398
Cpgi21998 9 70140918 to 70142094 1176 CpG island CpG island 21998
Tssr90399 9 70141356 to 70141482 126 - TSS region transcription start site region 90399
Tssr90400 9 70141484 to 70141559 75 - TSS region transcription start site region 90400
Tssr90401 9 70142172 to 70142183 11 - TSS region transcription start site region 90401
Gm24257 9 70148806 to 70148936 130 - snoRNA gene predicted gene, 24257
Gm39476 9 70149687 to 70160267 10580 - lncRNA gene predicted gene, 39476
Gm26849 9 70169986 to 70197548 27562 - lincRNA gene predicted gene, 26849
Tssr90402 9 70197470 to 70197478 8 - TSS region transcription start site region 90402
Cpgi21999 9 70207022 to 70208412 1390 CpG island CpG island 21999
Tssr85878 9 70207342 to 70207356 14 + TSS region transcription start site region 85878
Myo1e 9 70207350 to 70399766 192416 + protein coding gene myosin IE
Tssr85879 9 70207375 to 70207387 12 + TSS region transcription start site region 85879
Tssr85880 9 70207398 to 70207414 16 + TSS region transcription start site region 85880
Tssr90403 9 70211721 to 70211744 23 - TSS region transcription start site region 90403
Tssr85881 9 70213211 to 70213214 3 + TSS region transcription start site region 85881
Tssr90404 9 70217369 to 70217409 40 - TSS region transcription start site region 90404
Tssr85882 9 70220715 to 70220736 21 + TSS region transcription start site region 85882
Tssr85883 9 70220746 to 70220766 20 + TSS region transcription start site region 85883
Tssr85884 9 70221035 to 70221044 9 + TSS region transcription start site region 85884
Tssr85885 9 70221074 to 70221088 14 + TSS region transcription start site region 85885
Tssr85886 9 70235162 to 70235206 44 + TSS region transcription start site region 85886
Tssr85887 9 70235869 to 70235901 32 + TSS region transcription start site region 85887
Tssr85888 9 70240367 to 70240385 18 + TSS region transcription start site region 85888
Tssr85889 9 70250575 to 70250589 14 + TSS region transcription start site region 85889
Tssr85890 9 70270957 to 70270960 3 + TSS region transcription start site region 85890
Tssr85891 9 70275889 to 70275911 22 + TSS region transcription start site region 85891
Tssr85892 9 70281348 to 70281352 4 + TSS region transcription start site region 85892
Gm40531 9 70287068 to 70298583 11515 - lncRNA gene predicted gene, 40531
Tssr85893 9 70298283 to 70298292 9 + TSS region transcription start site region 85893
4833444G19Rik 9 70311093 to 70314323 3230 unclassified non-coding RNA gene RIKEN cDNA 4833444G19 gene
Tssr85894 9 70314209 to 70314258 49 + TSS region transcription start site region 85894
Tssr85895 9 70317183 to 70317204 21 + TSS region transcription start site region 85895
Tssr85896 9 70321385 to 70321394 9 + TSS region transcription start site region 85896
Tssr85897 9 70321607 to 70321651 44 + TSS region transcription start site region 85897
Tssr85898 9 70342042 to 70342055 13 + TSS region transcription start site region 85898
Gm18017 9 70343871 to 70344633 762 + pseudogene predicted gene, 18017
Tssr85899 9 70370406 to 70370418 12 + TSS region transcription start site region 85899
Tssr2924 9 70389751 to 70389753 2 + TSS region transcription start site region 2924
Tssr85900 9 70398852 to 70398871 19 + TSS region transcription start site region 85900
Tssr85901 9 70399323 to 70399349 26 + TSS region transcription start site region 85901
Tssr85902 9 70399355 to 70399394 39 + TSS region transcription start site region 85902
Tssr85903 9 70399420 to 70399431 11 + TSS region transcription start site region 85903
Mir5626 9 70405694 to 70405753 59 - miRNA gene microRNA 5626
Ccnb2 9 70407692 to 70421547 13855 - protein coding gene cyclin B2
Tssr90405 9 70413233 to 70413274 41 - TSS region transcription start site region 90405
Cpgi22000 9 70421166 to 70421713 547 CpG island CpG island 22000
Tssr90406 9 70421491 to 70421529 38 - TSS region transcription start site region 90406
Tssr90407 9 70421533 to 70421592 59 - TSS region transcription start site region 90407
Rnf111 9 70425424 to 70503725 78301 - protein coding gene ring finger 111
Tssr90408 9 70455669 to 70455673 4 - TSS region transcription start site region 90408
Tssr90409 9 70457883 to 70457899 16 - TSS region transcription start site region 90409
Gm24615 9 70475484 to 70475596 112 + snoRNA gene predicted gene, 24615
Tssr90410 9 70484802 to 70484811 9 - TSS region transcription start site region 90410
Tssr90411 9 70488117 to 70488120 3 - TSS region transcription start site region 90411
Cpgi22001 9 70502962 to 70504029 1067 CpG island CpG island 22001
Tssr90412 9 70503329 to 70503378 49 - TSS region transcription start site region 90412
Tssr90413 9 70503718 to 70503805 87 - TSS region transcription start site region 90413
Tssr85904 9 70512207 to 70512220 13 + TSS region transcription start site region 85904
Tssr85905 9 70512224 to 70512244 20 + TSS region transcription start site region 85905
Gm23588 9 70517200 to 70517298 98 + snRNA gene predicted gene, 23588
Gm23730 9 70521598 to 70521704 106 - snRNA gene predicted gene, 23730
Tssr85906 9 70526880 to 70526892 12 + TSS region transcription start site region 85906
Gm22229 9 70537814 to 70537921 107 + snRNA gene predicted gene, 22229
Cpgi22002 9 70542209 to 70543503 1294 CpG island CpG island 22002
Tssr85907 9 70542393 to 70542416 23 + TSS region transcription start site region 85907
Tssr90414 9 70542679 to 70542691 12 - TSS region transcription start site region 90414
Tssr85908 9 70542742 to 70542827 85 + TSS region transcription start site region 85908
Sltm 9 70542754 to 70592234 49480 + protein coding gene SAFB-like, transcription modulator
Tssr85909 9 70542848 to 70542870 22 + TSS region transcription start site region 85909
Tssr85910 9 70542872 to 70542920 48 + TSS region transcription start site region 85910
Tssr85911 9 70543045 to 70543056 11 + TSS region transcription start site region 85911
Tssr90415 9 70543160 to 70543174 14 - TSS region transcription start site region 90415
Tssr85912 9 70543212 to 70543226 14 + TSS region transcription start site region 85912
Tssr85913 9 70543234 to 70543247 13 + TSS region transcription start site region 85913
9030411K21Rik 9 70549444 to 70550713 1269 unclassified non-coding RNA gene RIKEN cDNA 9030411K21 gene
Tssr85914 9 70573607 to 70573616 9 + TSS region transcription start site region 85914
Tssr85915 9 70576718 to 70576731 13 + TSS region transcription start site region 85915
Tssr85916 9 70576737 to 70576760 23 + TSS region transcription start site region 85916
Tssr85917 9 70576769 to 70576795 26 + TSS region transcription start site region 85917
Tssr85918 9 70579317 to 70579331 14 + TSS region transcription start site region 85918
Tssr85919 9 70579372 to 70579386 14 + TSS region transcription start site region 85919
Tssr85920 9 70580253 to 70580291 38 + TSS region transcription start site region 85920
Tssr85921 9 70580775 to 70580787 12 + TSS region transcription start site region 85921
Tssr85922 9 70580823 to 70580834 11 + TSS region transcription start site region 85922
Tssr85923 9 70581320 to 70581337 17 + TSS region transcription start site region 85923
Tssr90416 9 70585236 to 70585262 26 - TSS region transcription start site region 90416
Mindy2 9 70599014 to 70657174 58160 - protein coding gene MINDY lysine 48 deubiquitinase 2
Tssr90417 9 70623691 to 70623706 15 - TSS region transcription start site region 90417
Tssr90418 9 70641400 to 70641403 3 - TSS region transcription start site region 90418
Tssr90419 9 70656134 to 70656138 4 - TSS region transcription start site region 90419
Tssr85924 9 70656229 to 70656245 16 + TSS region transcription start site region 85924
Tssr85925 9 70656248 to 70656261 13 + TSS region transcription start site region 85925
Gm10642 9 70656251 to 70657860 1609 + protein coding gene predicted gene 10642
Cpgi22003 9 70656318 to 70657727 1409 CpG island CpG island 22003
Tssr90420 9 70657121 to 70657188 67 - TSS region transcription start site region 90420
Gm31872 9 70657230 to 70668759 11529 + lncRNA gene predicted gene, 31872
Tssr90421 9 70657235 to 70657248 13 - TSS region transcription start site region 90421
Tssr85926 9 70658158 to 70658160 2 + TSS region transcription start site region 85926
Tssr85927 9 70658532 to 70658537 5 + TSS region transcription start site region 85927
Cpgi22004 9 70678602 to 70679999 1397 CpG island CpG island 22004
Tssr85928 9 70678950 to 70679010 60 + TSS region transcription start site region 85928
Adam10 9 70678997 to 70780229 101232 + protein coding gene a disintegrin and metallopeptidase domain 10
Tssr85929 9 70679021 to 70679116 95 + TSS region transcription start site region 85929
Tssr85930 9 70679129 to 70679140 11 + TSS region transcription start site region 85930
Tssr90422 9 70692013 to 70692040 27 - TSS region transcription start site region 90422
Tssr85931 9 70710039 to 70710040 1 + TSS region transcription start site region 85931
Cycs-ps1 9 70711380 to 70712249 869 + pseudogene cytochrome c, pseudogene 1
Tssr85932 9 70729910 to 70729912 2 + TSS region transcription start site region 85932
Tssr85933 9 70748192 to 70748206 14 + TSS region transcription start site region 85933
Tssr85934 9 70754168 to 70754180 12 + TSS region transcription start site region 85934
Tssr2925 9 70768713 to 70768721 8 + TSS region transcription start site region 2925
Tssr85935 9 70768803 to 70768817 14 + TSS region transcription start site region 85935
Tssr85936 9 70779118 to 70779144 26 + TSS region transcription start site region 85936
Tssr85937 9 70779538 to 70779560 22 + TSS region transcription start site region 85937
Lipc 9 70798128 to 70952221 154093 - protein coding gene lipase, hepatic
Gm25149 9 70799556 to 70799637 81 - miRNA gene predicted gene, 25149
Tssr90423 9 70816979 to 70816994 15 - TSS region transcription start site region 90423
Tssr85938 9 70835118 to 70835126 8 + TSS region transcription start site region 85938
Tssr90424 9 70835180 to 70835184 4 - TSS region transcription start site region 90424
Tssr85939 9 70852545 to 70852574 29 + TSS region transcription start site region 85939
Gm3436 9 70852576 to 70853415 839 + pseudogene predicted pseudogene 3436
Tssr85940 9 70914078 to 70914088 10 + TSS region transcription start site region 85940
Tssr85941 9 70914124 to 70914164 40 + TSS region transcription start site region 85941
Tssr85942 9 70914320 to 70914325 5 + TSS region transcription start site region 85942
Tssr85943 9 70927128 to 70927130 2 + TSS region transcription start site region 85943
Tssr85944 9 70928137 to 70928151 14 + TSS region transcription start site region 85944
Tssr85945 9 70928299 to 70928307 8 + TSS region transcription start site region 85945
Tssr85946 9 70928770 to 70928779 9 + TSS region transcription start site region 85946
Gm32017 9 70930488 to 70934430 3942 + lncRNA gene predicted gene, 32017
Tssr85947 9 70931779 to 70931789 10 + TSS region transcription start site region 85947
Tssr85948 9 70932672 to 70932678 6 + TSS region transcription start site region 85948
Tssr85949 9 70934273 to 70934276 3 + TSS region transcription start site region 85949
Tssr90425 9 70934580 to 70934585 5 - TSS region transcription start site region 90425
Tssr90426 9 70934598 to 70934624 26 - TSS region transcription start site region 90426
Tssr90427 9 70934808 to 70934847 39 - TSS region transcription start site region 90427
Tssr2926 9 70942826 to 70942841 15 + TSS region transcription start site region 2926
Tssr90428 9 70952144 to 70952155 11 - TSS region transcription start site region 90428
Tssr85950 9 70956030 to 70956039 9 + TSS region transcription start site region 85950
Tssr85951 9 70956110 to 70956121 11 + TSS region transcription start site region 85951
Tssr85952 9 70956688 to 70956696 8 + TSS region transcription start site region 85952
Tssr85953 9 70956917 to 70956927 10 + TSS region transcription start site region 85953
Gm46118 9 70958410 to 70959418 1008 + lncRNA gene predicted gene, 46118
Gm32074 9 70966938 to 70980345 13407 - lncRNA gene predicted gene, 32074
Gm18013 9 70989691 to 70990239 548 - pseudogene predicted gene, 18013
D9Mit132 9 71005075 to 71005317 242 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 132
Gm46119 9 71015917 to 71028424 12507 - lncRNA gene predicted gene, 46119
Tssr85954 9 71069148 to 71069152 4 + TSS region transcription start site region 85954
Gm46120 9 71069154 to 71076525 7371 + lncRNA gene predicted gene, 46120
Aqp9 9 71110659 to 71168085 57426 - protein coding gene aquaporin 9
Gm47268 9 71126842 to 71127544 702 + pseudogene predicted gene, 47268
Gm32714 9 71150691 to 71159644 8953 + lncRNA gene predicted gene, 32714
Tssr85955 9 71157343 to 71157373 30 + TSS region transcription start site region 85955
Tssr85956 9 71157406 to 71157416 10 + TSS region transcription start site region 85956
Tssr90429 9 71163088 to 71163100 12 - TSS region transcription start site region 90429
Tssr90430 9 71163224 to 71163293 69 - TSS region transcription start site region 90430
Tssr90431 9 71163295 to 71163315 20 - TSS region transcription start site region 90431
Tssr90432 9 71163353 to 71163364 11 - TSS region transcription start site region 90432
Tssr90433 9 71165204 to 71165222 18 - TSS region transcription start site region 90433
Tssr2927 9 71165335 to 71165345 10 + TSS region transcription start site region 2927
Tssr90434 9 71168671 to 71168683 12 - TSS region transcription start site region 90434
Tssr90435 9 71168687 to 71168698 11 - TSS region transcription start site region 90435
Gm32511 9 71168776 to 71208122 39346 + antisense lncRNA gene predicted gene, 32511
Cpgi22005 9 71169210 to 71169369 159 CpG island CpG island 22005
Gm3458 9 71211913 to 71215386 3473 - lncRNA gene predicted gene 3458
Cpgi22006 9 71215197 to 71216692 1495 CpG island CpG island 22006
Tssr90436 9 71215325 to 71215336 11 - TSS region transcription start site region 90436
Tssr2928 9 71215367 to 71215380 13 + TSS region transcription start site region 2928
Tssr90437 9 71215372 to 71215389 17 - TSS region transcription start site region 90437
Tssr85957 9 71215779 to 71215792 13 + TSS region transcription start site region 85957
Aldh1a2 9 71215789 to 71296243 80454 + protein coding gene aldehyde dehydrogenase family 1, subfamily A2