Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:69342220-70477652

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Gm15511 9 69348889 to 69364247 15358 - antisense lncRNA gene predicted gene 15511
Tssr90372 9 69349725 to 69349755 30 - TSS region transcription start site region 90372
D9Mit289 9 69360465 to 69360575 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 289
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
Tssr85850 9 69363853 to 69363867 14 + TSS region transcription start site region 85850
Cpgi21988 9 69364200 to 69364469 269 CpG island CpG island 21988
Tssr85851 9 69364369 to 69364393 24 + TSS region transcription start site region 85851
Cpgi21989 9 69397708 to 69398491 783 CpG island CpG island 21989
Tssr85852 9 69397897 to 69397928 31 + TSS region transcription start site region 85852
Ice2 9 69397906 to 69433122 35216 + protein coding gene interactor of little elongation complex ELL subunit 2
Tssr85853 9 69397929 to 69397937 8 + TSS region transcription start site region 85853
Tssr85854 9 69397938 to 69397972 34 + TSS region transcription start site region 85854
Tssr85855 9 69397975 to 69397987 12 + TSS region transcription start site region 85855
Tssr85856 9 69403837 to 69403840 3 + TSS region transcription start site region 85856
Gm7802 9 69436986 to 69437247 261 - pseudogene predicted gene 7802
Tssr90373 9 69440005 to 69440008 3 - TSS region transcription start site region 90373
Tssr90374 9 69443325 to 69443329 4 - TSS region transcription start site region 90374
Gm18587 9 69445030 to 69445805 775 + pseudogene predicted gene, 18587
Gm4978 9 69450235 to 69451035 800 - pseudogene predicted gene 4978
Cpgi21990 9 69453538 to 69454189 651 CpG island CpG island 21990
Tssr85857 9 69453676 to 69453704 28 + TSS region transcription start site region 85857
Anxa2 9 69453683 to 69491792 38109 + protein coding gene annexin A2
Tssr85858 9 69454084 to 69454116 32 + TSS region transcription start site region 85858
Mir3109 9 69456944 to 69457031 87 + miRNA gene microRNA 3109
Tssr85859 9 69458625 to 69458669 44 + TSS region transcription start site region 85859
Tssr85860 9 69460139 to 69460151 12 + TSS region transcription start site region 85860
Tssr85861 9 69464469 to 69464474 5 + TSS region transcription start site region 85861
Tssr85862 9 69467280 to 69467305 25 + TSS region transcription start site region 85862
Tssr90375 9 69467356 to 69467401 45 - TSS region transcription start site region 90375
Tssr85863 9 69467954 to 69467960 6 + TSS region transcription start site region 85863
Tssr85864 9 69476393 to 69476397 4 + TSS region transcription start site region 85864
Gm16144 9 69477029 to 69479598 2569 - antisense lncRNA gene predicted gene 16144
Tssr85865 9 69479546 to 69479579 33 + TSS region transcription start site region 85865
Tssr90376 9 69491772 to 69491791 19 - TSS region transcription start site region 90376
Cpgi21991 9 69505091 to 69505289 198 CpG island CpG island 21991
D9Mit304 9 69511745 to 69511866 121 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 304
Gm47203 9 69599307 to 69599754 447 - pseudogene predicted gene, 47203
Gm31469 9 69667336 to 69672632 5296 - lncRNA gene predicted gene, 31469
Foxb1 9 69757710 to 69760940 3230 - protein coding gene forkhead box B1
Cpgi21992 9 69759077 to 69761402 2325 CpG island CpG island 21992
Tssr90377 9 69760847 to 69760856 9 - TSS region transcription start site region 90377
Tssr90378 9 69760865 to 69760879 14 - TSS region transcription start site region 90378
Tssr90379 9 69760924 to 69760935 11 - TSS region transcription start site region 90379
Tssr85866 9 69761049 to 69761067 18 + TSS region transcription start site region 85866
Tssr85867 9 69761088 to 69761093 5 + TSS region transcription start site region 85867
B230323A14Rik 9 69761146 to 69830199 69053 + antisense lncRNA gene RIKEN cDNA B230323A14 gene
Cpgi21993 9 69764482 to 69765369 887 CpG island CpG island 21993
Gm31530 9 69767416 to 69770131 2715 + lncRNA gene predicted gene, 31530
Tssr85868 9 69767618 to 69767637 19 + TSS region transcription start site region 85868
Cpgi21994 9 69769044 to 69769383 339 CpG island CpG island 21994
D9Mit176 9 69783679 to 69783820 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 176
Gm18745 9 69792604 to 69793151 547 - pseudogene predicted gene, 18745
D9Mit259 9 69831043 to 69831153 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 259
Gm39368 9 69887654 to 69905438 17784 + lncRNA gene predicted gene, 39368
Gm31587 9 69907220 to 69912652 5432 + lncRNA gene predicted gene, 31587
Cpgi21995 9 69907491 to 69907718 227 CpG island CpG island 21995
D9Mit54 9 69963060 to 69963205 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 54
Gm28731 9 69988400 to 69989968 1568 - antisense lncRNA gene predicted gene 28731
Cpgi21996 9 69989192 to 69990169 977 CpG island CpG island 21996
Tssr85869 9 69989416 to 69989450 34 + TSS region transcription start site region 85869
Bnip2 9 69989466 to 70008317 18851 + protein coding gene BCL2/adenovirus E1B interacting protein 2
Tssr85870 9 69989468 to 69989539 71 + TSS region transcription start site region 85870
Tssr85871 9 69995415 to 69995429 14 + TSS region transcription start site region 85871
Tssr85872 9 70007155 to 70007171 16 + TSS region transcription start site region 85872
Cpgi21997 9 70012346 to 70013004 658 CpG island CpG island 21997
Tssr85873 9 70012540 to 70012592 52 + TSS region transcription start site region 85873
Gtf2a2 9 70012550 to 70022866 10316 + protein coding gene general transcription factor II A, 2
Tssr85874 9 70012594 to 70012611 17 + TSS region transcription start site region 85874
Tssr85875 9 70020251 to 70020263 12 + TSS region transcription start site region 85875
Gcnt3 9 70031496 to 70038088 6592 - protein coding gene glucosaminyl (N-acetyl) transferase 3, mucin type
Tssr90380 9 70032444 to 70032448 4 - TSS region transcription start site region 90380
Tssr90381 9 70032634 to 70032637 3 - TSS region transcription start site region 90381
Tssr90382 9 70035556 to 70035574 18 - TSS region transcription start site region 90382
Tssr90383 9 70036681 to 70036704 23 - TSS region transcription start site region 90383
Tssr90384 9 70036705 to 70036711 6 - TSS region transcription start site region 90384
Tssr90385 9 70036728 to 70036739 11 - TSS region transcription start site region 90385
Tssr90386 9 70036795 to 70036802 7 - TSS region transcription start site region 90386
Tssr90387 9 70036810 to 70036817 7 - TSS region transcription start site region 90387
Tssr90388 9 70036818 to 70036841 23 - TSS region transcription start site region 90388
Tssr90389 9 70037951 to 70037960 9 - TSS region transcription start site region 90389
Tssr90390 9 70037993 to 70038018 25 - TSS region transcription start site region 90390
Tssr90391 9 70038043 to 70038052 9 - TSS region transcription start site region 90391
Tssr90392 9 70038054 to 70038057 3 - TSS region transcription start site region 90392
Tssr90393 9 70038075 to 70038093 18 - TSS region transcription start site region 90393
Tssr90394 9 70038096 to 70038109 13 - TSS region transcription start site region 90394
Tssr90395 9 70040680 to 70040715 35 - TSS region transcription start site region 90395
Tssr85876 9 70067918 to 70067933 15 + TSS region transcription start site region 85876
Tssr85877 9 70067946 to 70067955 9 + TSS region transcription start site region 85877
Gm47233 9 70069867 to 70072034 2167 + unclassified gene predicted gene, 47233
2210414F02Rik 9 70072923 to 70073443 520 + lincRNA gene RIKEN cDNA 2210414F02 gene
Gm39369 9 70079791 to 70083046 3255 - lncRNA gene predicted gene, 39369
Fam81a 9 70088511 to 70142555 54044 - protein coding gene family with sequence similarity 81, member A
Tssr90396 9 70090252 to 70090258 6 - TSS region transcription start site region 90396
Tssr90397 9 70103075 to 70103110 35 - TSS region transcription start site region 90397
Tssr90398 9 70103117 to 70103142 25 - TSS region transcription start site region 90398
Cpgi21998 9 70140918 to 70142094 1176 CpG island CpG island 21998
Tssr90399 9 70141356 to 70141482 126 - TSS region transcription start site region 90399
Tssr90400 9 70141484 to 70141559 75 - TSS region transcription start site region 90400
Tssr90401 9 70142172 to 70142183 11 - TSS region transcription start site region 90401
Gm24257 9 70148806 to 70148936 130 - snoRNA gene predicted gene, 24257
Gm39476 9 70149687 to 70160267 10580 - lncRNA gene predicted gene, 39476
Gm26849 9 70169986 to 70197548 27562 - lincRNA gene predicted gene, 26849
Tssr90402 9 70197470 to 70197478 8 - TSS region transcription start site region 90402
Cpgi21999 9 70207022 to 70208412 1390 CpG island CpG island 21999
Tssr85878 9 70207342 to 70207356 14 + TSS region transcription start site region 85878
Myo1e 9 70207350 to 70399766 192416 + protein coding gene myosin IE
Tssr85879 9 70207375 to 70207387 12 + TSS region transcription start site region 85879
Tssr85880 9 70207398 to 70207414 16 + TSS region transcription start site region 85880
Tssr90403 9 70211721 to 70211744 23 - TSS region transcription start site region 90403
Tssr85881 9 70213211 to 70213214 3 + TSS region transcription start site region 85881
Tssr90404 9 70217369 to 70217409 40 - TSS region transcription start site region 90404
Tssr85882 9 70220715 to 70220736 21 + TSS region transcription start site region 85882
Tssr85883 9 70220746 to 70220766 20 + TSS region transcription start site region 85883
Tssr85884 9 70221035 to 70221044 9 + TSS region transcription start site region 85884
Tssr85885 9 70221074 to 70221088 14 + TSS region transcription start site region 85885
Tssr85886 9 70235162 to 70235206 44 + TSS region transcription start site region 85886
Tssr85887 9 70235869 to 70235901 32 + TSS region transcription start site region 85887
Tssr85888 9 70240367 to 70240385 18 + TSS region transcription start site region 85888
Tssr85889 9 70250575 to 70250589 14 + TSS region transcription start site region 85889
Tssr85890 9 70270957 to 70270960 3 + TSS region transcription start site region 85890
Tssr85891 9 70275889 to 70275911 22 + TSS region transcription start site region 85891
Tssr85892 9 70281348 to 70281352 4 + TSS region transcription start site region 85892
Gm40531 9 70287068 to 70298583 11515 - lncRNA gene predicted gene, 40531
Tssr85893 9 70298283 to 70298292 9 + TSS region transcription start site region 85893
4833444G19Rik 9 70311093 to 70314323 3230 unclassified non-coding RNA gene RIKEN cDNA 4833444G19 gene
Tssr85894 9 70314209 to 70314258 49 + TSS region transcription start site region 85894
Tssr85895 9 70317183 to 70317204 21 + TSS region transcription start site region 85895
Tssr85896 9 70321385 to 70321394 9 + TSS region transcription start site region 85896
Tssr85897 9 70321607 to 70321651 44 + TSS region transcription start site region 85897
Tssr85898 9 70342042 to 70342055 13 + TSS region transcription start site region 85898
Gm18017 9 70343871 to 70344633 762 + pseudogene predicted gene, 18017
Tssr85899 9 70370406 to 70370418 12 + TSS region transcription start site region 85899
Tssr2924 9 70389751 to 70389753 2 + TSS region transcription start site region 2924
Tssr85900 9 70398852 to 70398871 19 + TSS region transcription start site region 85900
Tssr85901 9 70399323 to 70399349 26 + TSS region transcription start site region 85901
Tssr85902 9 70399355 to 70399394 39 + TSS region transcription start site region 85902
Tssr85903 9 70399420 to 70399431 11 + TSS region transcription start site region 85903
Mir5626 9 70405694 to 70405753 59 - miRNA gene microRNA 5626
Ccnb2 9 70407692 to 70421547 13855 - protein coding gene cyclin B2
Tssr90405 9 70413233 to 70413274 41 - TSS region transcription start site region 90405
Cpgi22000 9 70421166 to 70421713 547 CpG island CpG island 22000
Tssr90406 9 70421491 to 70421529 38 - TSS region transcription start site region 90406
Tssr90407 9 70421533 to 70421592 59 - TSS region transcription start site region 90407
Rnf111 9 70425424 to 70503725 78301 - protein coding gene ring finger 111
Tssr90408 9 70455669 to 70455673 4 - TSS region transcription start site region 90408
Tssr90409 9 70457883 to 70457899 16 - TSS region transcription start site region 90409
Gm24615 9 70475484 to 70475596 112 + snoRNA gene predicted gene, 24615