Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:69134902-69444907

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Tssr85836 9 69165690 to 69165710 20 + TSS region transcription start site region 85836
Tssr85837 9 69226856 to 69226860 4 + TSS region transcription start site region 85837
Tssr85838 9 69239123 to 69239126 3 + TSS region transcription start site region 85838
Tssr85839 9 69288379 to 69288404 25 + TSS region transcription start site region 85839
Cpgi21987 9 69289311 to 69291518 2207 CpG island CpG island 21987
Tssr85840 9 69289841 to 69289849 8 + TSS region transcription start site region 85840
Tssr85841 9 69289865 to 69289895 30 + TSS region transcription start site region 85841
Tssr85842 9 69289902 to 69289907 5 + TSS region transcription start site region 85842
Tssr85843 9 69289909 to 69289937 28 + TSS region transcription start site region 85843
Tssr85844 9 69294665 to 69294678 13 + TSS region transcription start site region 85844
Tssr90370 9 69295794 to 69295797 3 - TSS region transcription start site region 90370
Tssr90371 9 69300394 to 69300411 17 - TSS region transcription start site region 90371
Gm46153 9 69300420 to 69305821 5401 - lncRNA gene predicted gene, 46153
Tssr85845 9 69300531 to 69300540 9 + TSS region transcription start site region 85845
Tssr85846 9 69314125 to 69314129 4 + TSS region transcription start site region 85846
Tssr85847 9 69314781 to 69314806 25 + TSS region transcription start site region 85847
Tssr85848 9 69340225 to 69340235 10 + TSS region transcription start site region 85848
Tssr85849 9 69340782 to 69340802 20 + TSS region transcription start site region 85849
Gm15511 9 69348889 to 69364247 15358 - antisense lncRNA gene predicted gene 15511
Tssr90372 9 69349725 to 69349755 30 - TSS region transcription start site region 90372
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
D9Mit289 9 69360465 to 69360575 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 289
Tssr85850 9 69363853 to 69363867 14 + TSS region transcription start site region 85850
Cpgi21988 9 69364200 to 69364469 269 CpG island CpG island 21988
Tssr85851 9 69364369 to 69364393 24 + TSS region transcription start site region 85851
Cpgi21989 9 69397708 to 69398491 783 CpG island CpG island 21989
Tssr85852 9 69397897 to 69397928 31 + TSS region transcription start site region 85852
Ice2 9 69397906 to 69433122 35216 + protein coding gene interactor of little elongation complex ELL subunit 2
Tssr85853 9 69397929 to 69397937 8 + TSS region transcription start site region 85853
Tssr85854 9 69397938 to 69397972 34 + TSS region transcription start site region 85854
Tssr85855 9 69397975 to 69397987 12 + TSS region transcription start site region 85855
Tssr85856 9 69403837 to 69403840 3 + TSS region transcription start site region 85856
Gm7802 9 69436986 to 69437247 261 - pseudogene predicted gene 7802
Tssr90373 9 69440005 to 69440008 3 - TSS region transcription start site region 90373
Tssr90374 9 69443325 to 69443329 4 - TSS region transcription start site region 90374