Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:68762975-70032987

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq8 9 25000000 to 69000000 44000000 QTL body mass index QTL 8
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
avc3 9 63603876 to 68829021 5225145 heritable phenotypic marker atrioventricular canal 3
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
9530091C08Rik 9 68765346 to 68773322 7976 + lncRNA gene RIKEN cDNA 9530091C08 gene
Tssr90360 9 68771458 to 68771462 4 - TSS region transcription start site region 90360
D930001M23Rik 9 68784400 to 68786651 2251 unclassified gene Riken cDNA D930001M23 gene
Tssr85827 9 68803105 to 68803108 3 + TSS region transcription start site region 85827
Tssr85828 9 68824777 to 68824792 15 + TSS region transcription start site region 85828
D9Dcr8 9 68828916 to 68829019 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 8
D9Mit260 9 68828924 to 68829021 97 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 260
D9Mit158 9 68882178 to 68882268 90 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 158
Tssr85829 9 68882848 to 68882849 1 + TSS region transcription start site region 85829
Gm31262 9 68905445 to 68917692 12247 + lncRNA gene predicted gene, 31262
Tssr85830 9 68906883 to 68906885 2 + TSS region transcription start site region 85830
Tssr90361 9 68956678 to 68956681 3 - TSS region transcription start site region 90361
Tssr85831 9 68966716 to 68966743 27 + TSS region transcription start site region 85831
Tssr85832 9 68969128 to 68969141 13 + TSS region transcription start site region 85832
Tssr85833 9 68969143 to 68969160 17 + TSS region transcription start site region 85833
Tssr90362 9 68969471 to 68969489 18 - TSS region transcription start site region 90362
Tssr90363 9 68969519 to 68969540 21 - TSS region transcription start site region 90363
Tssr90364 9 68969555 to 68969569 14 - TSS region transcription start site region 90364
Tssr85834 9 68970383 to 68970403 20 + TSS region transcription start site region 85834
Tssr90365 9 68972338 to 68972349 11 - TSS region transcription start site region 90365
Tssr90366 9 69029132 to 69029143 11 - TSS region transcription start site region 90366
Tssr90367 9 69034287 to 69034299 12 - TSS region transcription start site region 90367
Tssr90368 9 69034340 to 69034350 10 - TSS region transcription start site region 90368
Tssr90369 9 69034454 to 69034468 14 - TSS region transcription start site region 90369
Tssr85835 9 69094578 to 69094583 5 + TSS region transcription start site region 85835
E130120C16Rik 9 69125175 to 69128875 3700 unclassified gene RIKEN cDNA E130120C16 gene
Tssr85836 9 69165690 to 69165710 20 + TSS region transcription start site region 85836
Tssr85837 9 69226856 to 69226860 4 + TSS region transcription start site region 85837
Tssr85838 9 69239123 to 69239126 3 + TSS region transcription start site region 85838
Tssr85839 9 69288379 to 69288404 25 + TSS region transcription start site region 85839
Cpgi21987 9 69289311 to 69291518 2207 CpG island CpG island 21987
Tssr85840 9 69289841 to 69289849 8 + TSS region transcription start site region 85840
Tssr85841 9 69289865 to 69289895 30 + TSS region transcription start site region 85841
Tssr85842 9 69289902 to 69289907 5 + TSS region transcription start site region 85842
Tssr85843 9 69289909 to 69289937 28 + TSS region transcription start site region 85843
Tssr85844 9 69294665 to 69294678 13 + TSS region transcription start site region 85844
Tssr90370 9 69295794 to 69295797 3 - TSS region transcription start site region 90370
Tssr90371 9 69300394 to 69300411 17 - TSS region transcription start site region 90371
Gm46153 9 69300420 to 69305821 5401 - lncRNA gene predicted gene, 46153
Tssr85845 9 69300531 to 69300540 9 + TSS region transcription start site region 85845
Tssr85846 9 69314125 to 69314129 4 + TSS region transcription start site region 85846
Tssr85847 9 69314781 to 69314806 25 + TSS region transcription start site region 85847
Tssr85848 9 69340225 to 69340235 10 + TSS region transcription start site region 85848
Tssr85849 9 69340782 to 69340802 20 + TSS region transcription start site region 85849
Gm15511 9 69348889 to 69364247 15358 - antisense lncRNA gene predicted gene 15511
Tssr90372 9 69349725 to 69349755 30 - TSS region transcription start site region 90372
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
D9Mit289 9 69360465 to 69360575 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 289
Tssr85850 9 69363853 to 69363867 14 + TSS region transcription start site region 85850
Cpgi21988 9 69364200 to 69364469 269 CpG island CpG island 21988
Tssr85851 9 69364369 to 69364393 24 + TSS region transcription start site region 85851
Cpgi21989 9 69397708 to 69398491 783 CpG island CpG island 21989
Tssr85852 9 69397897 to 69397928 31 + TSS region transcription start site region 85852
Ice2 9 69397906 to 69433122 35216 + protein coding gene interactor of little elongation complex ELL subunit 2
Tssr85853 9 69397929 to 69397937 8 + TSS region transcription start site region 85853
Tssr85854 9 69397938 to 69397972 34 + TSS region transcription start site region 85854
Tssr85855 9 69397975 to 69397987 12 + TSS region transcription start site region 85855
Tssr85856 9 69403837 to 69403840 3 + TSS region transcription start site region 85856
Gm7802 9 69436986 to 69437247 261 - pseudogene predicted gene 7802
Tssr90373 9 69440005 to 69440008 3 - TSS region transcription start site region 90373
Tssr90374 9 69443325 to 69443329 4 - TSS region transcription start site region 90374
Gm18587 9 69445030 to 69445805 775 + pseudogene predicted gene, 18587
Gm4978 9 69450235 to 69451035 800 - pseudogene predicted gene 4978
Cpgi21990 9 69453538 to 69454189 651 CpG island CpG island 21990
Tssr85857 9 69453676 to 69453704 28 + TSS region transcription start site region 85857
Anxa2 9 69453683 to 69491792 38109 + protein coding gene annexin A2
Tssr85858 9 69454084 to 69454116 32 + TSS region transcription start site region 85858
Mir3109 9 69456944 to 69457031 87 + miRNA gene microRNA 3109
Tssr85859 9 69458625 to 69458669 44 + TSS region transcription start site region 85859
Tssr85860 9 69460139 to 69460151 12 + TSS region transcription start site region 85860
Tssr85861 9 69464469 to 69464474 5 + TSS region transcription start site region 85861
Tssr85862 9 69467280 to 69467305 25 + TSS region transcription start site region 85862
Tssr90375 9 69467356 to 69467401 45 - TSS region transcription start site region 90375
Tssr85863 9 69467954 to 69467960 6 + TSS region transcription start site region 85863
Tssr85864 9 69476393 to 69476397 4 + TSS region transcription start site region 85864
Gm16144 9 69477029 to 69479598 2569 - antisense lncRNA gene predicted gene 16144
Tssr85865 9 69479546 to 69479579 33 + TSS region transcription start site region 85865
Tssr90376 9 69491772 to 69491791 19 - TSS region transcription start site region 90376
Cpgi21991 9 69505091 to 69505289 198 CpG island CpG island 21991
D9Mit304 9 69511745 to 69511866 121 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 304
Gm47203 9 69599307 to 69599754 447 - pseudogene predicted gene, 47203
Gm31469 9 69667336 to 69672632 5296 - lncRNA gene predicted gene, 31469
Foxb1 9 69757710 to 69760940 3230 - protein coding gene forkhead box B1
Cpgi21992 9 69759077 to 69761402 2325 CpG island CpG island 21992
Tssr90377 9 69760847 to 69760856 9 - TSS region transcription start site region 90377
Tssr90378 9 69760865 to 69760879 14 - TSS region transcription start site region 90378
Tssr90379 9 69760924 to 69760935 11 - TSS region transcription start site region 90379
Tssr85866 9 69761049 to 69761067 18 + TSS region transcription start site region 85866
Tssr85867 9 69761088 to 69761093 5 + TSS region transcription start site region 85867
B230323A14Rik 9 69761146 to 69830199 69053 + antisense lncRNA gene RIKEN cDNA B230323A14 gene
Cpgi21993 9 69764482 to 69765369 887 CpG island CpG island 21993
Gm31530 9 69767416 to 69770131 2715 + lncRNA gene predicted gene, 31530
Tssr85868 9 69767618 to 69767637 19 + TSS region transcription start site region 85868
Cpgi21994 9 69769044 to 69769383 339 CpG island CpG island 21994
D9Mit176 9 69783679 to 69783820 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 176
Gm18745 9 69792604 to 69793151 547 - pseudogene predicted gene, 18745
D9Mit259 9 69831043 to 69831153 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 259
Gm39368 9 69887654 to 69905438 17784 + lncRNA gene predicted gene, 39368
Gm31587 9 69907220 to 69912652 5432 + lncRNA gene predicted gene, 31587
Cpgi21995 9 69907491 to 69907718 227 CpG island CpG island 21995
D9Mit54 9 69963060 to 69963205 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 54
Gm28731 9 69988400 to 69989968 1568 - antisense lncRNA gene predicted gene 28731
Cpgi21996 9 69989192 to 69990169 977 CpG island CpG island 21996
Tssr85869 9 69989416 to 69989450 34 + TSS region transcription start site region 85869
Bnip2 9 69989466 to 70008317 18851 + protein coding gene BCL2/adenovirus E1B interacting protein 2
Tssr85870 9 69989468 to 69989539 71 + TSS region transcription start site region 85870
Tssr85871 9 69995415 to 69995429 14 + TSS region transcription start site region 85871
Tssr85872 9 70007155 to 70007171 16 + TSS region transcription start site region 85872
Cpgi21997 9 70012346 to 70013004 658 CpG island CpG island 21997
Tssr85873 9 70012540 to 70012592 52 + TSS region transcription start site region 85873
Gtf2a2 9 70012550 to 70022866 10316 + protein coding gene general transcription factor II A, 2
Tssr85874 9 70012594 to 70012611 17 + TSS region transcription start site region 85874
Tssr85875 9 70020251 to 70020263 12 + TSS region transcription start site region 85875
Gcnt3 9 70031496 to 70038088 6592 - protein coding gene glucosaminyl (N-acetyl) transferase 3, mucin type
Tssr90380 9 70032444 to 70032448 4 - TSS region transcription start site region 90380
Tssr90381 9 70032634 to 70032637 3 - TSS region transcription start site region 90381