Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:68320575-68960623

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
avc3 9 63603876 to 68829021 5225145 heritable phenotypic marker atrioventricular canal 3
Gm19987 9 68421406 to 68421904 498 - pseudogene predicted gene, 19987
Gm22169 9 68461339 to 68461445 106 - snRNA gene predicted gene, 22169
4930502A04Rik 9 68470902 to 68520200 49298 - lincRNA gene RIKEN cDNA 4930502A04 gene
Gm22962 9 68510163 to 68510235 72 + snoRNA gene predicted gene, 22962
Gm47169 9 68552395 to 68552556 161 + pseudogene predicted gene, 47169
Gm31141 9 68556289 to 68562301 6012 - lncRNA gene predicted gene, 31141
Tssr90358 9 68558606 to 68558607 1 - TSS region transcription start site region 90358
Tssr90359 9 68569252 to 68569257 5 - TSS region transcription start site region 90359
Tssr85819 9 68640575 to 68640623 48 + TSS region transcription start site region 85819
Gm31325 9 68653067 to 68653791 724 - lncRNA gene predicted gene, 31325
Cpgi21985 9 68653116 to 68655031 1915 CpG island CpG island 21985
Tssr85820 9 68653626 to 68653639 13 + TSS region transcription start site region 85820
Tssr85821 9 68653715 to 68653731 16 + TSS region transcription start site region 85821
Tssr85822 9 68653742 to 68653757 15 + TSS region transcription start site region 85822
Tssr85823 9 68653761 to 68653785 24 + TSS region transcription start site region 85823
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Cpgi21986 9 68655514 to 68655710 196 CpG island CpG island 21986
D9Mit165 9 68681869 to 68681990 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 165
Tssr85824 9 68717736 to 68717741 5 + TSS region transcription start site region 85824
Tssr85825 9 68728268 to 68728269 1 + TSS region transcription start site region 85825
Tssr85826 9 68737021 to 68737026 5 + TSS region transcription start site region 85826
9530091C08Rik 9 68765346 to 68773322 7976 + lncRNA gene RIKEN cDNA 9530091C08 gene
Tssr90360 9 68771458 to 68771462 4 - TSS region transcription start site region 90360
D930001M23Rik 9 68784400 to 68786651 2251 unclassified gene Riken cDNA D930001M23 gene
Tssr85827 9 68803105 to 68803108 3 + TSS region transcription start site region 85827
Tssr85828 9 68824777 to 68824792 15 + TSS region transcription start site region 85828
D9Dcr8 9 68828916 to 68829019 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 8
D9Mit260 9 68828924 to 68829021 97 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 260
D9Mit158 9 68882178 to 68882268 90 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 158
Tssr85829 9 68882848 to 68882849 1 + TSS region transcription start site region 85829
Gm31262 9 68905445 to 68917692 12247 + lncRNA gene predicted gene, 31262
Tssr85830 9 68906883 to 68906885 2 + TSS region transcription start site region 85830
Tssr90361 9 68956678 to 68956681 3 - TSS region transcription start site region 90361