Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:67775029-68695400

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Tssr90356 9 67817986 to 67818024 38 - TSS region transcription start site region 90356
C2cd4a 9 67830532 to 67832330 1798 - protein coding gene C2 calcium-dependent domain containing 4A
Cpgi21983 9 67830561 to 67831888 1327 CpG island CpG island 21983
Tssr90357 9 67832325 to 67832331 6 - TSS region transcription start site region 90357
Cpgi21984 9 67839841 to 67840795 954 CpG island CpG island 21984
Tssr85801 9 67840331 to 67840358 27 + TSS region transcription start site region 85801
Tssr85802 9 67840363 to 67840372 9 + TSS region transcription start site region 85802
Tssr85803 9 67840380 to 67840383 3 + TSS region transcription start site region 85803
Tssr85804 9 67840386 to 67840429 43 + TSS region transcription start site region 85804
Vps13c 9 67840396 to 67995638 155242 + protein coding gene vacuolar protein sorting 13C
Tssr85805 9 67840447 to 67840454 7 + TSS region transcription start site region 85805
Tssr85806 9 67852487 to 67852505 18 + TSS region transcription start site region 85806
Tssr85807 9 67854306 to 67854323 17 + TSS region transcription start site region 85807
Tssr85808 9 67858827 to 67858845 18 + TSS region transcription start site region 85808
Tssr85809 9 67858846 to 67858865 19 + TSS region transcription start site region 85809
Tssr85810 9 67862289 to 67862298 9 + TSS region transcription start site region 85810
Tssr85811 9 67880427 to 67880450 23 + TSS region transcription start site region 85811
Tssr85812 9 67891807 to 67891814 7 + TSS region transcription start site region 85812
Tssr85813 9 67903601 to 67903608 7 + TSS region transcription start site region 85813
Tssr85814 9 67935297 to 67935329 32 + TSS region transcription start site region 85814
Tssr85815 9 67984675 to 67984678 3 + TSS region transcription start site region 85815
D9Dcr7 9 67993744 to 67993852 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 7
Tssr85816 9 67996392 to 67996422 30 + TSS region transcription start site region 85816
Tssr85817 9 67996524 to 67996538 14 + TSS region transcription start site region 85817
Tssr85818 9 67996618 to 67996676 58 + TSS region transcription start site region 85818
Gm20745 9 68017964 to 68025714 7750 - lincRNA gene predicted gene, 20745
Gm28195 9 68235029 to 68235400 371 + lincRNA gene predicted gene 28195
Gm22382 9 68280574 to 68280703 129 + snoRNA gene predicted gene, 22382
Gm19987 9 68421406 to 68421904 498 - pseudogene predicted gene, 19987
Gm22169 9 68461339 to 68461445 106 - snRNA gene predicted gene, 22169
4930502A04Rik 9 68470902 to 68520200 49298 - lincRNA gene RIKEN cDNA 4930502A04 gene
Gm22962 9 68510163 to 68510235 72 + snoRNA gene predicted gene, 22962
Gm47169 9 68552395 to 68552556 161 + pseudogene predicted gene, 47169
Gm31141 9 68556289 to 68562301 6012 - lncRNA gene predicted gene, 31141
Tssr90358 9 68558606 to 68558607 1 - TSS region transcription start site region 90358
Tssr90359 9 68569252 to 68569257 5 - TSS region transcription start site region 90359
Tssr85819 9 68640575 to 68640623 48 + TSS region transcription start site region 85819
Gm31325 9 68653067 to 68653791 724 - lncRNA gene predicted gene, 31325
Cpgi21985 9 68653116 to 68655031 1915 CpG island CpG island 21985
Tssr85820 9 68653626 to 68653639 13 + TSS region transcription start site region 85820
Tssr85821 9 68653715 to 68653731 16 + TSS region transcription start site region 85821
Tssr85822 9 68653742 to 68653757 15 + TSS region transcription start site region 85822
Tssr85823 9 68653761 to 68653785 24 + TSS region transcription start site region 85823
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Cpgi21986 9 68655514 to 68655710 196 CpG island CpG island 21986
D9Mit165 9 68681869 to 68681990 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 165