Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:67721406-69121904

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq8 9 25000000 to 69000000 44000000 QTL body mass index QTL 8
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
avc3 9 63603876 to 68829021 5225145 heritable phenotypic marker atrioventricular canal 3
Mir7241 9 67727717 to 67727780 63 - miRNA gene microRNA 7241
Mir7242 9 67729499 to 67729577 78 - miRNA gene microRNA 7242
Tssr90352 9 67733738 to 67733749 11 - TSS region transcription start site region 90352
Tssr90353 9 67733755 to 67733764 9 - TSS region transcription start site region 90353
Tssr90354 9 67733766 to 67733791 25 - TSS region transcription start site region 90354
Tssr90355 9 67733798 to 67733803 5 - TSS region transcription start site region 90355
Cpgi21981 9 67733839 to 67733994 155 CpG island CpG island 21981
Tssr85797 9 67733939 to 67733952 13 + TSS region transcription start site region 85797
Tssr85798 9 67733960 to 67733972 12 + TSS region transcription start site region 85798
Gm7787 9 67748077 to 67748764 687 - pseudogene predicted gene 7787
Tssr85799 9 67757515 to 67757518 3 + TSS region transcription start site region 85799
M5C1000I18Rik 9 67758712 to 67760230 1518 - lincRNA gene RIKEN cDNA M5C1000I18 gene
Cpgi21982 9 67759261 to 67760875 1614 CpG island CpG island 21982
Tssr85800 9 67759423 to 67759428 5 + TSS region transcription start site region 85800
C2cd4b 9 67759437 to 67760930 1493 + protein coding gene C2 calcium-dependent domain containing 4B
Tssr90356 9 67817986 to 67818024 38 - TSS region transcription start site region 90356
C2cd4a 9 67830532 to 67832330 1798 - protein coding gene C2 calcium-dependent domain containing 4A
Cpgi21983 9 67830561 to 67831888 1327 CpG island CpG island 21983
Tssr90357 9 67832325 to 67832331 6 - TSS region transcription start site region 90357
Cpgi21984 9 67839841 to 67840795 954 CpG island CpG island 21984
Tssr85801 9 67840331 to 67840358 27 + TSS region transcription start site region 85801
Tssr85802 9 67840363 to 67840372 9 + TSS region transcription start site region 85802
Tssr85803 9 67840380 to 67840383 3 + TSS region transcription start site region 85803
Tssr85804 9 67840386 to 67840429 43 + TSS region transcription start site region 85804
Vps13c 9 67840396 to 67995638 155242 + protein coding gene vacuolar protein sorting 13C
Tssr85805 9 67840447 to 67840454 7 + TSS region transcription start site region 85805
Tssr85806 9 67852487 to 67852505 18 + TSS region transcription start site region 85806
Tssr85807 9 67854306 to 67854323 17 + TSS region transcription start site region 85807
Tssr85808 9 67858827 to 67858845 18 + TSS region transcription start site region 85808
Tssr85809 9 67858846 to 67858865 19 + TSS region transcription start site region 85809
Tssr85810 9 67862289 to 67862298 9 + TSS region transcription start site region 85810
Tssr85811 9 67880427 to 67880450 23 + TSS region transcription start site region 85811
Tssr85812 9 67891807 to 67891814 7 + TSS region transcription start site region 85812
Tssr85813 9 67903601 to 67903608 7 + TSS region transcription start site region 85813
Tssr85814 9 67935297 to 67935329 32 + TSS region transcription start site region 85814
Tssr85815 9 67984675 to 67984678 3 + TSS region transcription start site region 85815
D9Dcr7 9 67993744 to 67993852 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 7
Tssr85816 9 67996392 to 67996422 30 + TSS region transcription start site region 85816
Tssr85817 9 67996524 to 67996538 14 + TSS region transcription start site region 85817
Tssr85818 9 67996618 to 67996676 58 + TSS region transcription start site region 85818
Gm20745 9 68017964 to 68025714 7750 - lincRNA gene predicted gene, 20745
Gm28195 9 68235029 to 68235400 371 + lincRNA gene predicted gene 28195
Gm22382 9 68280574 to 68280703 129 + snoRNA gene predicted gene, 22382
Gm19987 9 68421406 to 68421904 498 - pseudogene predicted gene, 19987
Gm22169 9 68461339 to 68461445 106 - snRNA gene predicted gene, 22169
4930502A04Rik 9 68470902 to 68520200 49298 - lincRNA gene RIKEN cDNA 4930502A04 gene
Gm22962 9 68510163 to 68510235 72 + snoRNA gene predicted gene, 22962
Gm47169 9 68552395 to 68552556 161 + pseudogene predicted gene, 47169
Gm31141 9 68556289 to 68562301 6012 - lncRNA gene predicted gene, 31141
Tssr90358 9 68558606 to 68558607 1 - TSS region transcription start site region 90358
Tssr90359 9 68569252 to 68569257 5 - TSS region transcription start site region 90359
Tssr85819 9 68640575 to 68640623 48 + TSS region transcription start site region 85819
Gm31325 9 68653067 to 68653791 724 - lncRNA gene predicted gene, 31325
Cpgi21985 9 68653116 to 68655031 1915 CpG island CpG island 21985
Tssr85820 9 68653626 to 68653639 13 + TSS region transcription start site region 85820
Tssr85821 9 68653715 to 68653731 16 + TSS region transcription start site region 85821
Tssr85822 9 68653742 to 68653757 15 + TSS region transcription start site region 85822
Tssr85823 9 68653761 to 68653785 24 + TSS region transcription start site region 85823
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Cpgi21986 9 68655514 to 68655710 196 CpG island CpG island 21986
D9Mit165 9 68681869 to 68681990 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 165
Tssr85824 9 68717736 to 68717741 5 + TSS region transcription start site region 85824
Tssr85825 9 68728268 to 68728269 1 + TSS region transcription start site region 85825
Tssr85826 9 68737021 to 68737026 5 + TSS region transcription start site region 85826
9530091C08Rik 9 68765346 to 68773322 7976 + lncRNA gene RIKEN cDNA 9530091C08 gene
Tssr90360 9 68771458 to 68771462 4 - TSS region transcription start site region 90360
D930001M23Rik 9 68784400 to 68786651 2251 unclassified gene Riken cDNA D930001M23 gene
Tssr85827 9 68803105 to 68803108 3 + TSS region transcription start site region 85827
Tssr85828 9 68824777 to 68824792 15 + TSS region transcription start site region 85828
D9Dcr8 9 68828916 to 68829019 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 8
D9Mit260 9 68828924 to 68829021 97 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 260
D9Mit158 9 68882178 to 68882268 90 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 158
Tssr85829 9 68882848 to 68882849 1 + TSS region transcription start site region 85829
Gm31262 9 68905445 to 68917692 12247 + lncRNA gene predicted gene, 31262
Tssr85830 9 68906883 to 68906885 2 + TSS region transcription start site region 85830
Tssr90361 9 68956678 to 68956681 3 - TSS region transcription start site region 90361
Tssr85831 9 68966716 to 68966743 27 + TSS region transcription start site region 85831
Tssr85832 9 68969128 to 68969141 13 + TSS region transcription start site region 85832
Tssr85833 9 68969143 to 68969160 17 + TSS region transcription start site region 85833
Tssr90362 9 68969471 to 68969489 18 - TSS region transcription start site region 90362
Tssr90363 9 68969519 to 68969540 21 - TSS region transcription start site region 90363
Tssr90364 9 68969555 to 68969569 14 - TSS region transcription start site region 90364
Tssr85834 9 68970383 to 68970403 20 + TSS region transcription start site region 85834
Tssr90365 9 68972338 to 68972349 11 - TSS region transcription start site region 90365
Tssr90366 9 69029132 to 69029143 11 - TSS region transcription start site region 90366
Tssr90367 9 69034287 to 69034299 12 - TSS region transcription start site region 90367
Tssr90368 9 69034340 to 69034350 10 - TSS region transcription start site region 90368
Tssr90369 9 69034454 to 69034468 14 - TSS region transcription start site region 90369
Tssr85835 9 69094578 to 69094583 5 + TSS region transcription start site region 85835