Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:67564400-70006651

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq8 9 25000000 to 69000000 44000000 QTL body mass index QTL 8
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
Hrtiq1 9 52514798 to 68648726 16133928 QTL heart rate time index, QTL 1
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
avc3 9 63603876 to 68829021 5225145 heritable phenotypic marker atrioventricular canal 3
D9Mit337 9 67570866 to 67570990 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 337
Tssr90343 9 67573190 to 67573224 34 - TSS region transcription start site region 90343
Tssr90344 9 67573226 to 67573269 43 - TSS region transcription start site region 90344
Tssr90345 9 67573293 to 67573311 18 - TSS region transcription start site region 90345
Cpgi21979 9 67632439 to 67634426 1987 CpG island CpG island 21979
Tssr90346 9 67633932 to 67633944 12 - TSS region transcription start site region 90346
Tssr90347 9 67633981 to 67634078 97 - TSS region transcription start site region 90347
Gm39365 9 67634190 to 67638954 4764 + lncRNA gene predicted gene, 39365
Tssr2923 9 67636107 to 67636126 19 + TSS region transcription start site region 2923
Gm30936 9 67689410 to 67694193 4783 - lncRNA gene predicted gene, 30936
Cpgi21980 9 67699939 to 67700315 376 CpG island CpG island 21980
Gm47110 9 67700181 to 67700585 404 + pseudogene predicted gene, 47110
Tssr90348 9 67703670 to 67703673 3 - TSS region transcription start site region 90348
Tssr90349 9 67707029 to 67707031 2 - TSS region transcription start site region 90349
Tssr90350 9 67710906 to 67710910 4 - TSS region transcription start site region 90350
Tssr90351 9 67713492 to 67713496 4 - TSS region transcription start site region 90351
Mir7241 9 67727717 to 67727780 63 - miRNA gene microRNA 7241
Mir7242 9 67729499 to 67729577 78 - miRNA gene microRNA 7242
Tssr90352 9 67733738 to 67733749 11 - TSS region transcription start site region 90352
Tssr90353 9 67733755 to 67733764 9 - TSS region transcription start site region 90353
Tssr90354 9 67733766 to 67733791 25 - TSS region transcription start site region 90354
Tssr90355 9 67733798 to 67733803 5 - TSS region transcription start site region 90355
Cpgi21981 9 67733839 to 67733994 155 CpG island CpG island 21981
Tssr85797 9 67733939 to 67733952 13 + TSS region transcription start site region 85797
Tssr85798 9 67733960 to 67733972 12 + TSS region transcription start site region 85798
Gm7787 9 67748077 to 67748764 687 - pseudogene predicted gene 7787
Tssr85799 9 67757515 to 67757518 3 + TSS region transcription start site region 85799
M5C1000I18Rik 9 67758712 to 67760230 1518 - lincRNA gene RIKEN cDNA M5C1000I18 gene
Cpgi21982 9 67759261 to 67760875 1614 CpG island CpG island 21982
Tssr85800 9 67759423 to 67759428 5 + TSS region transcription start site region 85800
C2cd4b 9 67759437 to 67760930 1493 + protein coding gene C2 calcium-dependent domain containing 4B
Tssr90356 9 67817986 to 67818024 38 - TSS region transcription start site region 90356
C2cd4a 9 67830532 to 67832330 1798 - protein coding gene C2 calcium-dependent domain containing 4A
Cpgi21983 9 67830561 to 67831888 1327 CpG island CpG island 21983
Tssr90357 9 67832325 to 67832331 6 - TSS region transcription start site region 90357
Cpgi21984 9 67839841 to 67840795 954 CpG island CpG island 21984
Tssr85801 9 67840331 to 67840358 27 + TSS region transcription start site region 85801
Tssr85802 9 67840363 to 67840372 9 + TSS region transcription start site region 85802
Tssr85803 9 67840380 to 67840383 3 + TSS region transcription start site region 85803
Tssr85804 9 67840386 to 67840429 43 + TSS region transcription start site region 85804
Vps13c 9 67840396 to 67995638 155242 + protein coding gene vacuolar protein sorting 13C
Tssr85805 9 67840447 to 67840454 7 + TSS region transcription start site region 85805
Tssr85806 9 67852487 to 67852505 18 + TSS region transcription start site region 85806
Tssr85807 9 67854306 to 67854323 17 + TSS region transcription start site region 85807
Tssr85808 9 67858827 to 67858845 18 + TSS region transcription start site region 85808
Tssr85809 9 67858846 to 67858865 19 + TSS region transcription start site region 85809
Tssr85810 9 67862289 to 67862298 9 + TSS region transcription start site region 85810
Tssr85811 9 67880427 to 67880450 23 + TSS region transcription start site region 85811
Tssr85812 9 67891807 to 67891814 7 + TSS region transcription start site region 85812
Tssr85813 9 67903601 to 67903608 7 + TSS region transcription start site region 85813
Tssr85814 9 67935297 to 67935329 32 + TSS region transcription start site region 85814
Tssr85815 9 67984675 to 67984678 3 + TSS region transcription start site region 85815
D9Dcr7 9 67993744 to 67993852 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 7
Tssr85816 9 67996392 to 67996422 30 + TSS region transcription start site region 85816
Tssr85817 9 67996524 to 67996538 14 + TSS region transcription start site region 85817
Tssr85818 9 67996618 to 67996676 58 + TSS region transcription start site region 85818
Gm20745 9 68017964 to 68025714 7750 - lincRNA gene predicted gene, 20745
Gm28195 9 68235029 to 68235400 371 + lincRNA gene predicted gene 28195
Gm22382 9 68280574 to 68280703 129 + snoRNA gene predicted gene, 22382
Gm19987 9 68421406 to 68421904 498 - pseudogene predicted gene, 19987
Gm22169 9 68461339 to 68461445 106 - snRNA gene predicted gene, 22169
4930502A04Rik 9 68470902 to 68520200 49298 - lincRNA gene RIKEN cDNA 4930502A04 gene
Gm22962 9 68510163 to 68510235 72 + snoRNA gene predicted gene, 22962
Gm47169 9 68552395 to 68552556 161 + pseudogene predicted gene, 47169
Gm31141 9 68556289 to 68562301 6012 - lncRNA gene predicted gene, 31141
Tssr90358 9 68558606 to 68558607 1 - TSS region transcription start site region 90358
Tssr90359 9 68569252 to 68569257 5 - TSS region transcription start site region 90359
Tssr85819 9 68640575 to 68640623 48 + TSS region transcription start site region 85819
Gm31325 9 68653067 to 68653791 724 - lncRNA gene predicted gene, 31325
Cpgi21985 9 68653116 to 68655031 1915 CpG island CpG island 21985
Tssr85820 9 68653626 to 68653639 13 + TSS region transcription start site region 85820
Tssr85821 9 68653715 to 68653731 16 + TSS region transcription start site region 85821
Tssr85822 9 68653742 to 68653757 15 + TSS region transcription start site region 85822
Tssr85823 9 68653761 to 68653785 24 + TSS region transcription start site region 85823
Rora 9 68653786 to 69388246 734460 + protein coding gene RAR-related orphan receptor alpha
Cpgi21986 9 68655514 to 68655710 196 CpG island CpG island 21986
D9Mit165 9 68681869 to 68681990 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 165
Tssr85824 9 68717736 to 68717741 5 + TSS region transcription start site region 85824
Tssr85825 9 68728268 to 68728269 1 + TSS region transcription start site region 85825
Tssr85826 9 68737021 to 68737026 5 + TSS region transcription start site region 85826
9530091C08Rik 9 68765346 to 68773322 7976 + lncRNA gene RIKEN cDNA 9530091C08 gene
Tssr90360 9 68771458 to 68771462 4 - TSS region transcription start site region 90360
D930001M23Rik 9 68784400 to 68786651 2251 unclassified gene Riken cDNA D930001M23 gene
Tssr85827 9 68803105 to 68803108 3 + TSS region transcription start site region 85827
Tssr85828 9 68824777 to 68824792 15 + TSS region transcription start site region 85828
D9Dcr8 9 68828916 to 68829019 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 8
D9Mit260 9 68828924 to 68829021 97 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 260
D9Mit158 9 68882178 to 68882268 90 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 158
Tssr85829 9 68882848 to 68882849 1 + TSS region transcription start site region 85829
Gm31262 9 68905445 to 68917692 12247 + lncRNA gene predicted gene, 31262
Tssr85830 9 68906883 to 68906885 2 + TSS region transcription start site region 85830
Tssr90361 9 68956678 to 68956681 3 - TSS region transcription start site region 90361
Tssr85831 9 68966716 to 68966743 27 + TSS region transcription start site region 85831
Tssr85832 9 68969128 to 68969141 13 + TSS region transcription start site region 85832
Tssr85833 9 68969143 to 68969160 17 + TSS region transcription start site region 85833
Tssr90362 9 68969471 to 68969489 18 - TSS region transcription start site region 90362
Tssr90363 9 68969519 to 68969540 21 - TSS region transcription start site region 90363
Tssr90364 9 68969555 to 68969569 14 - TSS region transcription start site region 90364
Tssr85834 9 68970383 to 68970403 20 + TSS region transcription start site region 85834
Tssr90365 9 68972338 to 68972349 11 - TSS region transcription start site region 90365
Tssr90366 9 69029132 to 69029143 11 - TSS region transcription start site region 90366
Tssr90367 9 69034287 to 69034299 12 - TSS region transcription start site region 90367
Tssr90368 9 69034340 to 69034350 10 - TSS region transcription start site region 90368
Tssr90369 9 69034454 to 69034468 14 - TSS region transcription start site region 90369
Tssr85835 9 69094578 to 69094583 5 + TSS region transcription start site region 85835
E130120C16Rik 9 69125175 to 69128875 3700 unclassified gene RIKEN cDNA E130120C16 gene
Tssr85836 9 69165690 to 69165710 20 + TSS region transcription start site region 85836
Tssr85837 9 69226856 to 69226860 4 + TSS region transcription start site region 85837
Tssr85838 9 69239123 to 69239126 3 + TSS region transcription start site region 85838
Tssr85839 9 69288379 to 69288404 25 + TSS region transcription start site region 85839
Cpgi21987 9 69289311 to 69291518 2207 CpG island CpG island 21987
Tssr85840 9 69289841 to 69289849 8 + TSS region transcription start site region 85840
Tssr85841 9 69289865 to 69289895 30 + TSS region transcription start site region 85841
Tssr85842 9 69289902 to 69289907 5 + TSS region transcription start site region 85842
Tssr85843 9 69289909 to 69289937 28 + TSS region transcription start site region 85843
Tssr85844 9 69294665 to 69294678 13 + TSS region transcription start site region 85844
Tssr90370 9 69295794 to 69295797 3 - TSS region transcription start site region 90370
Tssr90371 9 69300394 to 69300411 17 - TSS region transcription start site region 90371
Gm46153 9 69300420 to 69305821 5401 - lncRNA gene predicted gene, 46153
Tssr85845 9 69300531 to 69300540 9 + TSS region transcription start site region 85845
Tssr85846 9 69314125 to 69314129 4 + TSS region transcription start site region 85846
Tssr85847 9 69314781 to 69314806 25 + TSS region transcription start site region 85847
Tssr85848 9 69340225 to 69340235 10 + TSS region transcription start site region 85848
Tssr85849 9 69340782 to 69340802 20 + TSS region transcription start site region 85849
Gm15511 9 69348889 to 69364247 15358 - antisense lncRNA gene predicted gene 15511
Tssr90372 9 69349725 to 69349755 30 - TSS region transcription start site region 90372
D9Mit289 9 69360465 to 69360575 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 289
Habiir4 9 69360465 to 98819654 29459189 QTL hyperoxic acute lung injury imprinted region 4
Tssr85850 9 69363853 to 69363867 14 + TSS region transcription start site region 85850
Cpgi21988 9 69364200 to 69364469 269 CpG island CpG island 21988
Tssr85851 9 69364369 to 69364393 24 + TSS region transcription start site region 85851
Cpgi21989 9 69397708 to 69398491 783 CpG island CpG island 21989
Tssr85852 9 69397897 to 69397928 31 + TSS region transcription start site region 85852
Ice2 9 69397906 to 69433122 35216 + protein coding gene interactor of little elongation complex ELL subunit 2
Tssr85853 9 69397929 to 69397937 8 + TSS region transcription start site region 85853
Tssr85854 9 69397938 to 69397972 34 + TSS region transcription start site region 85854
Tssr85855 9 69397975 to 69397987 12 + TSS region transcription start site region 85855
Tssr85856 9 69403837 to 69403840 3 + TSS region transcription start site region 85856
Gm7802 9 69436986 to 69437247 261 - pseudogene predicted gene 7802
Tssr90373 9 69440005 to 69440008 3 - TSS region transcription start site region 90373
Tssr90374 9 69443325 to 69443329 4 - TSS region transcription start site region 90374
Gm18587 9 69445030 to 69445805 775 + pseudogene predicted gene, 18587
Gm4978 9 69450235 to 69451035 800 - pseudogene predicted gene 4978
Cpgi21990 9 69453538 to 69454189 651 CpG island CpG island 21990
Tssr85857 9 69453676 to 69453704 28 + TSS region transcription start site region 85857
Anxa2 9 69453683 to 69491792 38109 + protein coding gene annexin A2
Tssr85858 9 69454084 to 69454116 32 + TSS region transcription start site region 85858
Mir3109 9 69456944 to 69457031 87 + miRNA gene microRNA 3109
Tssr85859 9 69458625 to 69458669 44 + TSS region transcription start site region 85859
Tssr85860 9 69460139 to 69460151 12 + TSS region transcription start site region 85860
Tssr85861 9 69464469 to 69464474 5 + TSS region transcription start site region 85861
Tssr85862 9 69467280 to 69467305 25 + TSS region transcription start site region 85862
Tssr90375 9 69467356 to 69467401 45 - TSS region transcription start site region 90375
Tssr85863 9 69467954 to 69467960 6 + TSS region transcription start site region 85863
Tssr85864 9 69476393 to 69476397 4 + TSS region transcription start site region 85864
Gm16144 9 69477029 to 69479598 2569 - antisense lncRNA gene predicted gene 16144
Tssr85865 9 69479546 to 69479579 33 + TSS region transcription start site region 85865
Tssr90376 9 69491772 to 69491791 19 - TSS region transcription start site region 90376
Cpgi21991 9 69505091 to 69505289 198 CpG island CpG island 21991
D9Mit304 9 69511745 to 69511866 121 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 304
Gm47203 9 69599307 to 69599754 447 - pseudogene predicted gene, 47203
Gm31469 9 69667336 to 69672632 5296 - lncRNA gene predicted gene, 31469
Foxb1 9 69757710 to 69760940 3230 - protein coding gene forkhead box B1
Cpgi21992 9 69759077 to 69761402 2325 CpG island CpG island 21992
Tssr90377 9 69760847 to 69760856 9 - TSS region transcription start site region 90377
Tssr90378 9 69760865 to 69760879 14 - TSS region transcription start site region 90378
Tssr90379 9 69760924 to 69760935 11 - TSS region transcription start site region 90379
Tssr85866 9 69761049 to 69761067 18 + TSS region transcription start site region 85866
Tssr85867 9 69761088 to 69761093 5 + TSS region transcription start site region 85867
B230323A14Rik 9 69761146 to 69830199 69053 + antisense lncRNA gene RIKEN cDNA B230323A14 gene
Cpgi21993 9 69764482 to 69765369 887 CpG island CpG island 21993
Gm31530 9 69767416 to 69770131 2715 + lncRNA gene predicted gene, 31530
Tssr85868 9 69767618 to 69767637 19 + TSS region transcription start site region 85868
Cpgi21994 9 69769044 to 69769383 339 CpG island CpG island 21994
D9Mit176 9 69783679 to 69783820 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 176
Gm18745 9 69792604 to 69793151 547 - pseudogene predicted gene, 18745
D9Mit259 9 69831043 to 69831153 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 259
Gm39368 9 69887654 to 69905438 17784 + lncRNA gene predicted gene, 39368
Gm31587 9 69907220 to 69912652 5432 + lncRNA gene predicted gene, 31587
Cpgi21995 9 69907491 to 69907718 227 CpG island CpG island 21995
D9Mit54 9 69963060 to 69963205 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 54
Gm28731 9 69988400 to 69989968 1568 - antisense lncRNA gene predicted gene 28731
Cpgi21996 9 69989192 to 69990169 977 CpG island CpG island 21996
Tssr85869 9 69989416 to 69989450 34 + TSS region transcription start site region 85869
Bnip2 9 69989466 to 70008317 18851 + protein coding gene BCL2/adenovirus E1B interacting protein 2
Tssr85870 9 69989468 to 69989539 71 + TSS region transcription start site region 85870
Tssr85871 9 69995415 to 69995429 14 + TSS region transcription start site region 85871