Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:66443903-67623960

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El4 9 49508998 to 67244166 17735168 QTL epilepsy 4
Herc1 9 66350450 to 66508775 158325 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Gm28379 9 66417746 to 66448496 30750 - antisense lncRNA gene predicted gene 28379
Tssr85762 9 66445627 to 66445639 12 + TSS region transcription start site region 85762
Tssr85763 9 66448046 to 66448069 23 + TSS region transcription start site region 85763
Tssr85764 9 66468619 to 66468623 4 + TSS region transcription start site region 85764
Fbxl22 9 66508459 to 66514593 6134 - protein coding gene F-box and leucine-rich repeat protein 22
Cpgi21968 9 66511162 to 66512661 1499 CpG island CpG island 21968
Tssr90241 9 66511725 to 66511774 49 - TSS region transcription start site region 90241
Tssr90242 9 66512453 to 66512488 35 - TSS region transcription start site region 90242
Tssr85765 9 66512605 to 66512632 27 + TSS region transcription start site region 85765
Tssr90243 9 66514500 to 66514526 26 - TSS region transcription start site region 90243
Tssr90244 9 66514533 to 66514536 3 - TSS region transcription start site region 90244
Tssr90245 9 66514540 to 66514563 23 - TSS region transcription start site region 90245
Tssr90246 9 66514567 to 66514597 30 - TSS region transcription start site region 90246
Usp3 9 66514639 to 66593115 78476 - protein coding gene ubiquitin specific peptidase 3
Tssr90247 9 66518598 to 66518602 4 - TSS region transcription start site region 90247
Tssr90248 9 66518644 to 66518653 9 - TSS region transcription start site region 90248
Tssr90249 9 66520310 to 66520342 32 - TSS region transcription start site region 90249
Tssr90250 9 66520383 to 66520414 31 - TSS region transcription start site region 90250
Gm15563 9 66572001 to 66582059 10058 + antisense lncRNA gene predicted gene 15563
Tssr90251 9 66576028 to 66576048 20 - TSS region transcription start site region 90251
Tssr90252 9 66580315 to 66580321 6 - TSS region transcription start site region 90252
Tssr90253 9 66580692 to 66580700 8 - TSS region transcription start site region 90253
Tssr90254 9 66583182 to 66583184 2 - TSS region transcription start site region 90254
Tssr90255 9 66590672 to 66590675 3 - TSS region transcription start site region 90255
Cpgi21969 9 66591981 to 66593703 1722 CpG island CpG island 21969
Tssr90256 9 66592817 to 66592826 9 - TSS region transcription start site region 90256
Tssr90257 9 66592945 to 66592969 24 - TSS region transcription start site region 90257
Tssr90258 9 66592972 to 66592985 13 - TSS region transcription start site region 90258
Tssr90259 9 66592993 to 66593024 31 - TSS region transcription start site region 90259
Tssr90260 9 66593029 to 66593041 12 - TSS region transcription start site region 90260
Tssr90261 9 66593062 to 66593071 9 - TSS region transcription start site region 90261
Tssr90262 9 66593079 to 66593099 20 - TSS region transcription start site region 90262
Tssr90263 9 66593106 to 66593120 14 - TSS region transcription start site region 90263
Tssr90264 9 66593122 to 66593131 9 - TSS region transcription start site region 90264
Tssr85766 9 66593229 to 66593240 11 + TSS region transcription start site region 85766
Tssr85767 9 66593505 to 66593550 45 + TSS region transcription start site region 85767
D9Dcr4 9 66618015 to 66618117 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 4
Cpgi21970 9 66713670 to 66713940 270 CpG island CpG island 21970
Car12 9 66713686 to 66766845 53159 + protein coding gene carbonic anhydrase 12
Tssr85768 9 66713709 to 66713716 7 + TSS region transcription start site region 85768
Tssr85769 9 66713719 to 66713736 17 + TSS region transcription start site region 85769
D9Mit303 9 66721748 to 66721871 123 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 303
Tssr85770 9 66754400 to 66754406 6 + TSS region transcription start site region 85770
Aph1b 9 66775202 to 66795490 20288 - protein coding gene aph1 homolog B, gamma secretase subunit
Tssr90265 9 66782279 to 66782283 4 - TSS region transcription start site region 90265
Cpgi21971 9 66795027 to 66796076 1049 CpG island CpG island 21971
Tssr90266 9 66795298 to 66795319 21 - TSS region transcription start site region 90266
Tssr90267 9 66795331 to 66795411 80 - TSS region transcription start site region 90267
Tssr90268 9 66795469 to 66795521 52 - TSS region transcription start site region 90268
Gm10647 9 66797039 to 66799074 2035 + protein coding gene predicted gene 10647
BC050972 9 66798678 to 66804359 5681 - antisense lncRNA gene cDNA sequence BC050972
Tssr90269 9 66804326 to 66804341 15 - TSS region transcription start site region 90269
Tssr90270 9 66804342 to 66804357 15 - TSS region transcription start site region 90270
Ppp1r2-ps4 9 66805306 to 66805938 632 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 4
Cpgi21972 9 66806062 to 66806295 233 CpG island CpG island 21972
Aph1c 9 66814994 to 66834726 19732 - protein coding gene aph1 homolog C, gamma secretase subunit
Cpgi21973 9 66834197 to 66835516 1319 CpG island CpG island 21973
Tssr90271 9 66834622 to 66834634 12 - TSS region transcription start site region 90271
Tssr90272 9 66834659 to 66834677 18 - TSS region transcription start site region 90272
Gm17098 9 66834699 to 66835534 835 + antisense lncRNA gene predicted gene 17098
Tssr90273 9 66834707 to 66834710 3 - TSS region transcription start site region 90273
Tssr90274 9 66834716 to 66834724 8 - TSS region transcription start site region 90274
Rab8b 9 66843664 to 66919687 76023 - protein coding gene RAB8B, member RAS oncogene family
Tssr90275 9 66844370 to 66844381 11 - TSS region transcription start site region 90275
Tssr90276 9 66845318 to 66845327 9 - TSS region transcription start site region 90276
Tssr90277 9 66845538 to 66845552 14 - TSS region transcription start site region 90277
Tssr90278 9 66845627 to 66845642 15 - TSS region transcription start site region 90278
Tssr90279 9 66845661 to 66845681 20 - TSS region transcription start site region 90279
Tssr90280 9 66845690 to 66845704 14 - TSS region transcription start site region 90280
Tssr90281 9 66845752 to 66845841 89 - TSS region transcription start site region 90281
Tssr90282 9 66845843 to 66845884 41 - TSS region transcription start site region 90282
Tssr90283 9 66846277 to 66846299 22 - TSS region transcription start site region 90283
Tssr90284 9 66846360 to 66846383 23 - TSS region transcription start site region 90284
Tssr90285 9 66847595 to 66847621 26 - TSS region transcription start site region 90285
Tssr90286 9 66847625 to 66847643 18 - TSS region transcription start site region 90286
Tssr90287 9 66847667 to 66847682 15 - TSS region transcription start site region 90287
Gm40528 9 66872060 to 66883930 11870 + lncRNA gene predicted gene, 40528
Tssr85771 9 66872559 to 66872594 35 + TSS region transcription start site region 85771
Tssr90288 9 66879061 to 66879072 11 - TSS region transcription start site region 90288
Tssr90289 9 66881546 to 66881548 2 - TSS region transcription start site region 90289
Tssr90290 9 66882456 to 66882466 10 - TSS region transcription start site region 90290
Tssr90291 9 66901533 to 66901574 41 - TSS region transcription start site region 90291
Tssr90292 9 66915493 to 66915508 15 - TSS region transcription start site region 90292
Tssr85772 9 66915648 to 66915691 43 + TSS region transcription start site region 85772
Tssr90293 9 66916601 to 66916610 9 - TSS region transcription start site region 90293
Tssr90294 9 66918340 to 66918377 37 - TSS region transcription start site region 90294
Tssr85773 9 66918838 to 66918862 24 + TSS region transcription start site region 85773
Tssr85774 9 66918865 to 66918882 17 + TSS region transcription start site region 85774
Cpgi21974 9 66919018 to 66919943 925 CpG island CpG island 21974
Tssr90295 9 66919166 to 66919197 31 - TSS region transcription start site region 90295
Tssr90296 9 66919646 to 66919710 64 - TSS region transcription start site region 90296
Cpgi21975 9 66945674 to 66946802 1128 CpG island CpG island 21975
Tssr85775 9 66946057 to 66946143 86 + TSS region transcription start site region 85775
Rps27l 9 66946086 to 66949516 3430 + protein coding gene ribosomal protein S27-like
Tssr85776 9 66946395 to 66946424 29 + TSS region transcription start site region 85776
Tssr85777 9 66946428 to 66946452 24 + TSS region transcription start site region 85777
Tssr85778 9 66946829 to 66946845 16 + TSS region transcription start site region 85778
Lactb 9 66955388 to 66975484 20096 - protein coding gene lactamase, beta
Cpgi21976 9 66974816 to 66975551 735 CpG island CpG island 21976
Tssr85779 9 66974989 to 66975003 14 + TSS region transcription start site region 85779
Tssr90297 9 66975387 to 66975459 72 - TSS region transcription start site region 90297
Tssr85780 9 66978318 to 66978342 24 + TSS region transcription start site region 85780
Gm24225 9 66981088 to 66981185 97 - snRNA gene predicted gene, 24225
Tssr85781 9 67011922 to 67011925 3 + TSS region transcription start site region 85781
Gm30639 9 67012742 to 67022505 9763 + lncRNA gene predicted gene, 30639
Tssr85782 9 67013062 to 67013074 12 + TSS region transcription start site region 85782
Tssr85783 9 67013081 to 67013092 11 + TSS region transcription start site region 85783
Tssr2921 9 67020651 to 67020654 3 + TSS region transcription start site region 2921
Tpm1 9 67022590 to 67049401 26811 - protein coding gene tropomyosin 1, alpha
Tssr90298 9 67022643 to 67022660 17 - TSS region transcription start site region 90298
Tssr90299 9 67023246 to 67023261 15 - TSS region transcription start site region 90299
Tssr90300 9 67023314 to 67023345 31 - TSS region transcription start site region 90300
Tssr90301 9 67026656 to 67026669 13 - TSS region transcription start site region 90301
Tssr90302 9 67026823 to 67026827 4 - TSS region transcription start site region 90302
Tssr90303 9 67031077 to 67031102 25 - TSS region transcription start site region 90303
Tssr85784 9 67031448 to 67031482 34 + TSS region transcription start site region 85784
Tssr90304 9 67031474 to 67031527 53 - TSS region transcription start site region 90304
Tssr90305 9 67032528 to 67032550 22 - TSS region transcription start site region 90305
Tssr85785 9 67032796 to 67032837 41 + TSS region transcription start site region 85785
Tssr90306 9 67032842 to 67032871 29 - TSS region transcription start site region 90306
Tssr90307 9 67033377 to 67033382 5 - TSS region transcription start site region 90307
Tssr85786 9 67033866 to 67033886 20 + TSS region transcription start site region 85786
Tssr85787 9 67033898 to 67033904 6 + TSS region transcription start site region 85787
Tssr90308 9 67033903 to 67033960 57 - TSS region transcription start site region 90308
Tssr85788 9 67033907 to 67033961 54 + TSS region transcription start site region 85788
Tssr90309 9 67033974 to 67034001 27 - TSS region transcription start site region 90309
Tssr85789 9 67035985 to 67036005 20 + TSS region transcription start site region 85789
Tssr90310 9 67036042 to 67036086 44 - TSS region transcription start site region 90310
Tssr90311 9 67036105 to 67036137 32 - TSS region transcription start site region 90311
Tssr85790 9 67041132 to 67041142 10 + TSS region transcription start site region 85790
Tssr85791 9 67041145 to 67041157 12 + TSS region transcription start site region 85791
Tssr85792 9 67041728 to 67041731 3 + TSS region transcription start site region 85792
Cpgi21977 9 67043339 to 67044219 880 CpG island CpG island 21977
Tssr90312 9 67043718 to 67043742 24 - TSS region transcription start site region 90312
Tssr90313 9 67043743 to 67043820 77 - TSS region transcription start site region 90313
Tssr90314 9 67043824 to 67043829 5 - TSS region transcription start site region 90314
Tssr90315 9 67043832 to 67043843 11 - TSS region transcription start site region 90315
Tssr90316 9 67043844 to 67043862 18 - TSS region transcription start site region 90316
Tssr90317 9 67043869 to 67043945 76 - TSS region transcription start site region 90317
Tssr90318 9 67043953 to 67043960 7 - TSS region transcription start site region 90318
Tssr90319 9 67043970 to 67043983 13 - TSS region transcription start site region 90319
Tssr90320 9 67044950 to 67044954 4 - TSS region transcription start site region 90320
Tssr90321 9 67046108 to 67046121 13 - TSS region transcription start site region 90321
Cpgi21978 9 67047723 to 67049791 2068 CpG island CpG island 21978
Tssr85793 9 67047794 to 67047808 14 + TSS region transcription start site region 85793
Tssr85794 9 67047824 to 67047840 16 + TSS region transcription start site region 85794
Tssr90322 9 67047828 to 67047923 95 - TSS region transcription start site region 90322
Tssr90323 9 67048153 to 67048168 15 - TSS region transcription start site region 90323
Tssr90324 9 67049200 to 67049220 20 - TSS region transcription start site region 90324
Tssr90325 9 67049646 to 67049662 16 - TSS region transcription start site region 90325
Gm10646 9 67102300 to 67109601 7301 + lincRNA gene predicted gene 10646
Gm22145 9 67104208 to 67104355 147 + snRNA gene predicted gene, 22145
Gm19299 9 67133561 to 67163788 30227 + lincRNA gene predicted gene, 19299
Tssr90326 9 67155219 to 67155231 12 - TSS region transcription start site region 90326
Tssr90327 9 67155246 to 67155264 18 - TSS region transcription start site region 90327
D9Mit302.1 9 67155341 to 67155492 151 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 302.1
D9Mit302 9 67155562 to 67155667 105 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 302
D9Dcr5 9 67155565 to 67155660 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 5
Gm40529 9 67156369 to 67178243 21874 - lncRNA gene predicted gene, 40529
Tssr85795 9 67191621 to 67191662 41 + TSS region transcription start site region 85795
Tssr85796 9 67205061 to 67205093 32 + TSS region transcription start site region 85796
Tssr90328 9 67208348 to 67208368 20 - TSS region transcription start site region 90328
Tln2 9 67217087 to 67559703 342616 - protein coding gene talin 2
Mir190a 9 67236660 to 67236726 66 - miRNA gene microRNA 190a
D9Mit32 9 67244038 to 67244166 128 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 32
Bdln4 9 67244038 to 67244166 128 QTL body length 4
Tssr90329 9 67250892 to 67250899 7 - TSS region transcription start site region 90329
Tssr90330 9 67262087 to 67262106 19 - TSS region transcription start site region 90330
Tssr90331 9 67262140 to 67262147 7 - TSS region transcription start site region 90331
Tssr90332 9 67266900 to 67266910 10 - TSS region transcription start site region 90332
Tssr90333 9 67266919 to 67266930 11 - TSS region transcription start site region 90333
Tssr90334 9 67290288 to 67290292 4 - TSS region transcription start site region 90334
Tssr90335 9 67299236 to 67299281 45 - TSS region transcription start site region 90335
Tssr90336 9 67299297 to 67299308 11 - TSS region transcription start site region 90336
Tssr90337 9 67318579 to 67318591 12 - TSS region transcription start site region 90337
Tssr90338 9 67321962 to 67321973 11 - TSS region transcription start site region 90338
Tssr90339 9 67327647 to 67327666 19 - TSS region transcription start site region 90339
Tssr90340 9 67327667 to 67327688 21 - TSS region transcription start site region 90340
Tssr2922 9 67420199 to 67420201 2 + TSS region transcription start site region 2922
Gm47047 9 67424503 to 67427491 2988 + antisense lncRNA gene predicted gene, 47047
Tssr90341 9 67428818 to 67428867 49 - TSS region transcription start site region 90341
Tssr90342 9 67485186 to 67485200 14 - TSS region transcription start site region 90342
D9Dcr6 9 67529227 to 67529322 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 6
D9Mit337 9 67570866 to 67570990 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 337
Tssr90343 9 67573190 to 67573224 34 - TSS region transcription start site region 90343
Tssr90344 9 67573226 to 67573269 43 - TSS region transcription start site region 90344
Tssr90345 9 67573293 to 67573311 18 - TSS region transcription start site region 90345