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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:66179639-66928115

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dapk2 9 66158226 to 66272242 114016 + protein coding gene death-associated protein kinase 2
Tssr85753 9 66189251 to 66189256 5 + TSS region transcription start site region 85753
Cpgi21966 9 66220478 to 66220891 413 CpG island CpG island 21966
Gm19247 9 66273293 to 66273618 325 + pseudogene predicted gene, 19247
Gm39364 9 66299624 to 66301088 1464 - lncRNA gene predicted gene, 39364
Tssr90240 9 66300863 to 66300871 8 - TSS region transcription start site region 90240
Cpgi21967 9 66349806 to 66351328 1522 CpG island CpG island 21967
Tssr85754 9 66350066 to 66350085 19 + TSS region transcription start site region 85754
Gm30447 9 66350324 to 66351221 897 - protein coding gene predicted gene, 30447
Tssr85755 9 66350416 to 66350435 19 + TSS region transcription start site region 85755
Tssr85756 9 66350445 to 66350454 9 + TSS region transcription start site region 85756
Herc1 9 66350450 to 66508775 158325 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Tssr85757 9 66350465 to 66350515 50 + TSS region transcription start site region 85757
Tssr85758 9 66350559 to 66350566 7 + TSS region transcription start site region 85758
Gm23428 9 66360641 to 66360742 101 - snRNA gene predicted gene, 23428
Tssr85759 9 66373248 to 66373252 4 + TSS region transcription start site region 85759
Tssr85760 9 66394323 to 66394329 6 + TSS region transcription start site region 85760
Gm28379 9 66417746 to 66448496 30750 - antisense lncRNA gene predicted gene 28379
Tssr85761 9 66430516 to 66430547 31 + TSS region transcription start site region 85761
Tssr85762 9 66445627 to 66445639 12 + TSS region transcription start site region 85762
Tssr85763 9 66448046 to 66448069 23 + TSS region transcription start site region 85763
Tssr85764 9 66468619 to 66468623 4 + TSS region transcription start site region 85764
Fbxl22 9 66508459 to 66514593 6134 - protein coding gene F-box and leucine-rich repeat protein 22
Cpgi21968 9 66511162 to 66512661 1499 CpG island CpG island 21968
Tssr90241 9 66511725 to 66511774 49 - TSS region transcription start site region 90241
Tssr90242 9 66512453 to 66512488 35 - TSS region transcription start site region 90242
Tssr85765 9 66512605 to 66512632 27 + TSS region transcription start site region 85765
Tssr90243 9 66514500 to 66514526 26 - TSS region transcription start site region 90243
Tssr90244 9 66514533 to 66514536 3 - TSS region transcription start site region 90244
Tssr90245 9 66514540 to 66514563 23 - TSS region transcription start site region 90245
Tssr90246 9 66514567 to 66514597 30 - TSS region transcription start site region 90246
Usp3 9 66514639 to 66593115 78476 - protein coding gene ubiquitin specific peptidase 3
Tssr90247 9 66518598 to 66518602 4 - TSS region transcription start site region 90247
Tssr90248 9 66518644 to 66518653 9 - TSS region transcription start site region 90248
Tssr90249 9 66520310 to 66520342 32 - TSS region transcription start site region 90249
Tssr90250 9 66520383 to 66520414 31 - TSS region transcription start site region 90250
Gm15563 9 66572001 to 66582059 10058 + antisense lncRNA gene predicted gene 15563
Tssr90251 9 66576028 to 66576048 20 - TSS region transcription start site region 90251
Tssr90252 9 66580315 to 66580321 6 - TSS region transcription start site region 90252
Tssr90253 9 66580692 to 66580700 8 - TSS region transcription start site region 90253
Tssr90254 9 66583182 to 66583184 2 - TSS region transcription start site region 90254
Tssr90255 9 66590672 to 66590675 3 - TSS region transcription start site region 90255
Cpgi21969 9 66591981 to 66593703 1722 CpG island CpG island 21969
Tssr90256 9 66592817 to 66592826 9 - TSS region transcription start site region 90256
Tssr90257 9 66592945 to 66592969 24 - TSS region transcription start site region 90257
Tssr90258 9 66592972 to 66592985 13 - TSS region transcription start site region 90258
Tssr90259 9 66592993 to 66593024 31 - TSS region transcription start site region 90259
Tssr90260 9 66593029 to 66593041 12 - TSS region transcription start site region 90260
Tssr90261 9 66593062 to 66593071 9 - TSS region transcription start site region 90261
Tssr90262 9 66593079 to 66593099 20 - TSS region transcription start site region 90262
Tssr90263 9 66593106 to 66593120 14 - TSS region transcription start site region 90263
Tssr90264 9 66593122 to 66593131 9 - TSS region transcription start site region 90264
Tssr85766 9 66593229 to 66593240 11 + TSS region transcription start site region 85766
Tssr85767 9 66593505 to 66593550 45 + TSS region transcription start site region 85767
D9Dcr4 9 66618015 to 66618117 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 4
Cpgi21970 9 66713670 to 66713940 270 CpG island CpG island 21970
Car12 9 66713686 to 66766845 53159 + protein coding gene carbonic anhydrase 12
Tssr85768 9 66713709 to 66713716 7 + TSS region transcription start site region 85768
Tssr85769 9 66713719 to 66713736 17 + TSS region transcription start site region 85769
D9Mit303 9 66721748 to 66721871 123 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 303
Tssr85770 9 66754400 to 66754406 6 + TSS region transcription start site region 85770
Aph1b 9 66775202 to 66795490 20288 - protein coding gene aph1 homolog B, gamma secretase subunit
Tssr90265 9 66782279 to 66782283 4 - TSS region transcription start site region 90265
Cpgi21971 9 66795027 to 66796076 1049 CpG island CpG island 21971
Tssr90266 9 66795298 to 66795319 21 - TSS region transcription start site region 90266
Tssr90267 9 66795331 to 66795411 80 - TSS region transcription start site region 90267
Tssr90268 9 66795469 to 66795521 52 - TSS region transcription start site region 90268
Gm10647 9 66797039 to 66799074 2035 + protein coding gene predicted gene 10647
BC050972 9 66798678 to 66804359 5681 - antisense lncRNA gene cDNA sequence BC050972
Tssr90269 9 66804326 to 66804341 15 - TSS region transcription start site region 90269
Tssr90270 9 66804342 to 66804357 15 - TSS region transcription start site region 90270
Ppp1r2-ps4 9 66805306 to 66805938 632 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 4
Cpgi21972 9 66806062 to 66806295 233 CpG island CpG island 21972
Aph1c 9 66814994 to 66834726 19732 - protein coding gene aph1 homolog C, gamma secretase subunit
Cpgi21973 9 66834197 to 66835516 1319 CpG island CpG island 21973
Tssr90271 9 66834622 to 66834634 12 - TSS region transcription start site region 90271
Tssr90272 9 66834659 to 66834677 18 - TSS region transcription start site region 90272
Gm17098 9 66834699 to 66835534 835 + antisense lncRNA gene predicted gene 17098
Tssr90273 9 66834707 to 66834710 3 - TSS region transcription start site region 90273
Tssr90274 9 66834716 to 66834724 8 - TSS region transcription start site region 90274
Rab8b 9 66843664 to 66919687 76023 - protein coding gene RAB8B, member RAS oncogene family
Tssr90275 9 66844370 to 66844381 11 - TSS region transcription start site region 90275
Tssr90276 9 66845318 to 66845327 9 - TSS region transcription start site region 90276
Tssr90277 9 66845538 to 66845552 14 - TSS region transcription start site region 90277
Tssr90278 9 66845627 to 66845642 15 - TSS region transcription start site region 90278
Tssr90279 9 66845661 to 66845681 20 - TSS region transcription start site region 90279
Tssr90280 9 66845690 to 66845704 14 - TSS region transcription start site region 90280
Tssr90281 9 66845752 to 66845841 89 - TSS region transcription start site region 90281
Tssr90282 9 66845843 to 66845884 41 - TSS region transcription start site region 90282
Tssr90283 9 66846277 to 66846299 22 - TSS region transcription start site region 90283
Tssr90284 9 66846360 to 66846383 23 - TSS region transcription start site region 90284
Tssr90285 9 66847595 to 66847621 26 - TSS region transcription start site region 90285
Tssr90286 9 66847625 to 66847643 18 - TSS region transcription start site region 90286
Tssr90287 9 66847667 to 66847682 15 - TSS region transcription start site region 90287
Gm40528 9 66872060 to 66883930 11870 + lncRNA gene predicted gene, 40528
Tssr85771 9 66872559 to 66872594 35 + TSS region transcription start site region 85771
Tssr90288 9 66879061 to 66879072 11 - TSS region transcription start site region 90288
Tssr90289 9 66881546 to 66881548 2 - TSS region transcription start site region 90289
Tssr90290 9 66882456 to 66882466 10 - TSS region transcription start site region 90290
Tssr90291 9 66901533 to 66901574 41 - TSS region transcription start site region 90291
Tssr90292 9 66915493 to 66915508 15 - TSS region transcription start site region 90292
Tssr85772 9 66915648 to 66915691 43 + TSS region transcription start site region 85772
Tssr90293 9 66916601 to 66916610 9 - TSS region transcription start site region 90293
Tssr90294 9 66918340 to 66918377 37 - TSS region transcription start site region 90294
Tssr85773 9 66918838 to 66918862 24 + TSS region transcription start site region 85773
Tssr85774 9 66918865 to 66918882 17 + TSS region transcription start site region 85774
Cpgi21974 9 66919018 to 66919943 925 CpG island CpG island 21974
Tssr90295 9 66919166 to 66919197 31 - TSS region transcription start site region 90295
Tssr90296 9 66919646 to 66919710 64 - TSS region transcription start site region 90296