Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:66140416-66560435

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr85751 9 66145022 to 66145028 6 + TSS region transcription start site region 85751
Cpgi21965 9 66157807 to 66158736 929 CpG island CpG island 21965
Tssr85752 9 66158206 to 66158271 65 + TSS region transcription start site region 85752
Dapk2 9 66158226 to 66272242 114016 + protein coding gene death-associated protein kinase 2
D9Mit233 9 66175697 to 66175844 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 233
D9Mit233.1 9 66175806 to 66175927 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 233.1
Tssr85753 9 66189251 to 66189256 5 + TSS region transcription start site region 85753
Cpgi21966 9 66220478 to 66220891 413 CpG island CpG island 21966
Gm19247 9 66273293 to 66273618 325 + pseudogene predicted gene, 19247
Gm39364 9 66299624 to 66301088 1464 - lncRNA gene predicted gene, 39364
Tssr90240 9 66300863 to 66300871 8 - TSS region transcription start site region 90240
Cpgi21967 9 66349806 to 66351328 1522 CpG island CpG island 21967
Tssr85754 9 66350066 to 66350085 19 + TSS region transcription start site region 85754
Gm30447 9 66350324 to 66351221 897 - protein coding gene predicted gene, 30447
Tssr85755 9 66350416 to 66350435 19 + TSS region transcription start site region 85755
Tssr85756 9 66350445 to 66350454 9 + TSS region transcription start site region 85756
Herc1 9 66350450 to 66508775 158325 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Tssr85757 9 66350465 to 66350515 50 + TSS region transcription start site region 85757
Tssr85758 9 66350559 to 66350566 7 + TSS region transcription start site region 85758
Gm23428 9 66360641 to 66360742 101 - snRNA gene predicted gene, 23428
Tssr85759 9 66373248 to 66373252 4 + TSS region transcription start site region 85759
Tssr85760 9 66394323 to 66394329 6 + TSS region transcription start site region 85760
Gm28379 9 66417746 to 66448496 30750 - antisense lncRNA gene predicted gene 28379
Tssr85761 9 66430516 to 66430547 31 + TSS region transcription start site region 85761
Tssr85762 9 66445627 to 66445639 12 + TSS region transcription start site region 85762
Tssr85763 9 66448046 to 66448069 23 + TSS region transcription start site region 85763
Tssr85764 9 66468619 to 66468623 4 + TSS region transcription start site region 85764
Fbxl22 9 66508459 to 66514593 6134 - protein coding gene F-box and leucine-rich repeat protein 22
Cpgi21968 9 66511162 to 66512661 1499 CpG island CpG island 21968
Tssr90241 9 66511725 to 66511774 49 - TSS region transcription start site region 90241
Tssr90242 9 66512453 to 66512488 35 - TSS region transcription start site region 90242
Tssr85765 9 66512605 to 66512632 27 + TSS region transcription start site region 85765
Tssr90243 9 66514500 to 66514526 26 - TSS region transcription start site region 90243
Tssr90244 9 66514533 to 66514536 3 - TSS region transcription start site region 90244
Tssr90245 9 66514540 to 66514563 23 - TSS region transcription start site region 90245
Tssr90246 9 66514567 to 66514597 30 - TSS region transcription start site region 90246
Usp3 9 66514639 to 66593115 78476 - protein coding gene ubiquitin specific peptidase 3
Tssr90247 9 66518598 to 66518602 4 - TSS region transcription start site region 90247
Tssr90248 9 66518644 to 66518653 9 - TSS region transcription start site region 90248
Tssr90249 9 66520310 to 66520342 32 - TSS region transcription start site region 90249
Tssr90250 9 66520383 to 66520414 31 - TSS region transcription start site region 90250