Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65849023-65969083

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Trip4 9 65828930 to 65908794 79864 - protein coding gene thyroid hormone receptor interactor 4
Cpgi21958 9 65884860 to 65885289 429 CpG island CpG island 21958
Tssr90222 9 65885024 to 65885069 45 - TSS region transcription start site region 90222
Tssr90223 9 65885076 to 65885091 15 - TSS region transcription start site region 90223
Tssr90224 9 65885106 to 65885117 11 - TSS region transcription start site region 90224
Cpgi21959 9 65890177 to 65890358 181 CpG island CpG island 21959
Pclaf 9 65890237 to 65903266 13029 + protein coding gene PCNA clamp associated factor
Tssr85728 9 65890291 to 65890343 52 + TSS region transcription start site region 85728
Tssr85729 9 65890344 to 65890358 14 + TSS region transcription start site region 85729
Tssr85730 9 65890524 to 65890538 14 + TSS region transcription start site region 85730
D030028M11Rik 9 65895921 to 65898262 2341 unclassified gene RIKEN cDNA D030028M11 gene
Tssr85731 9 65896433 to 65896468 35 + TSS region transcription start site region 85731
Gm23248 9 65900201 to 65900308 107 + snRNA gene predicted gene, 23248
Tssr85732 9 65903097 to 65903102 5 + TSS region transcription start site region 85732
Cpgi21960 9 65908776 to 65909824 1048 CpG island CpG island 21960
Tssr90225 9 65908779 to 65908798 19 - TSS region transcription start site region 90225
Tssr90226 9 65908800 to 65908833 33 - TSS region transcription start site region 90226
Csnk1g1 9 65908962 to 66045015 136053 + protein coding gene casein kinase 1, gamma 1
Tssr85733 9 65908967 to 65909019 52 + TSS region transcription start site region 85733
Tssr85734 9 65909023 to 65909083 60 + TSS region transcription start site region 85734
Tssr85735 9 65909090 to 65909101 11 + TSS region transcription start site region 85735
Tssr85736 9 65914330 to 65914331 1 + TSS region transcription start site region 85736
Pgia5 9 65923774 to 65923895 121 QTL proteoglycan induced arthritis 5
D9Mit104 9 65923774 to 65923895 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 104
Cd4ts4 9 65923774 to 65923895 121 QTL CD4 T cell subset 4
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
Tssr85737 9 65924178 to 65924198 20 + TSS region transcription start site region 85737
Tssr85738 9 65924207 to 65924216 9 + TSS region transcription start site region 85738
Gm22657 9 65952314 to 65952445 131 - snoRNA gene predicted gene, 22657
Tssr85739 9 65965937 to 65965940 3 + TSS region transcription start site region 85739