Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65815445-66885454

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Zfp609 9 65692391 to 65827564 135173 - protein coding gene zinc finger protein 609
Cpgi21957 9 65826968 to 65828211 1243 CpG island CpG island 21957
Tssr90219 9 65827544 to 65827576 32 - TSS region transcription start site region 90219
Tssr90220 9 65827667 to 65827696 29 - TSS region transcription start site region 90220
Tssr90221 9 65827707 to 65827740 33 - TSS region transcription start site region 90221
Trip4 9 65828930 to 65908794 79864 - protein coding gene thyroid hormone receptor interactor 4
Gm30314 9 65832116 to 65841198 9082 + lncRNA gene predicted gene, 30314
n-R5s85 9 65836353 to 65836465 112 + rRNA gene nuclear encoded rRNA 5S 85
Gm16073 9 65838167 to 65838683 516 + pseudogene predicted gene 16073
Cpgi21958 9 65884860 to 65885289 429 CpG island CpG island 21958
Tssr90222 9 65885024 to 65885069 45 - TSS region transcription start site region 90222
Tssr90223 9 65885076 to 65885091 15 - TSS region transcription start site region 90223
Tssr90224 9 65885106 to 65885117 11 - TSS region transcription start site region 90224
Cpgi21959 9 65890177 to 65890358 181 CpG island CpG island 21959
Pclaf 9 65890237 to 65903266 13029 + protein coding gene PCNA clamp associated factor
Tssr85728 9 65890291 to 65890343 52 + TSS region transcription start site region 85728
Tssr85729 9 65890344 to 65890358 14 + TSS region transcription start site region 85729
Tssr85730 9 65890524 to 65890538 14 + TSS region transcription start site region 85730
D030028M11Rik 9 65895921 to 65898262 2341 unclassified gene RIKEN cDNA D030028M11 gene
Tssr85731 9 65896433 to 65896468 35 + TSS region transcription start site region 85731
Gm23248 9 65900201 to 65900308 107 + snRNA gene predicted gene, 23248
Tssr85732 9 65903097 to 65903102 5 + TSS region transcription start site region 85732
Cpgi21960 9 65908776 to 65909824 1048 CpG island CpG island 21960
Tssr90225 9 65908779 to 65908798 19 - TSS region transcription start site region 90225
Tssr90226 9 65908800 to 65908833 33 - TSS region transcription start site region 90226
Csnk1g1 9 65908962 to 66045015 136053 + protein coding gene casein kinase 1, gamma 1
Tssr85733 9 65908967 to 65909019 52 + TSS region transcription start site region 85733
Tssr85734 9 65909023 to 65909083 60 + TSS region transcription start site region 85734
Tssr85735 9 65909090 to 65909101 11 + TSS region transcription start site region 85735
Tssr85736 9 65914330 to 65914331 1 + TSS region transcription start site region 85736
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
Cd4ts4 9 65923774 to 65923895 121 QTL CD4 T cell subset 4
Pgia5 9 65923774 to 65923895 121 QTL proteoglycan induced arthritis 5
D9Mit104 9 65923774 to 65923895 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 104
Tssr85737 9 65924178 to 65924198 20 + TSS region transcription start site region 85737
Tssr85738 9 65924207 to 65924216 9 + TSS region transcription start site region 85738
Gm22657 9 65952314 to 65952445 131 - snoRNA gene predicted gene, 22657
Tssr85739 9 65965937 to 65965940 3 + TSS region transcription start site region 85739
D9Dcr3 9 65986191 to 65986295 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 3
Tssr85740 9 66004654 to 66004688 34 + TSS region transcription start site region 85740
Tssr85741 9 66032507 to 66032511 4 + TSS region transcription start site region 85741
Tssr85742 9 66040472 to 66040499 27 + TSS region transcription start site region 85742
Cpgi21961 9 66059753 to 66060674 921 CpG island CpG island 21961
Tssr90227 9 66059938 to 66059969 31 - TSS region transcription start site region 90227
Tssr85743 9 66060098 to 66060109 11 + TSS region transcription start site region 85743
Tssr2919 9 66060127 to 66060138 11 + TSS region transcription start site region 2919
Tssr2920 9 66060179 to 66060186 7 + TSS region transcription start site region 2920
Tssr85744 9 66060195 to 66060273 78 + TSS region transcription start site region 85744
Ppib 9 66060222 to 66066623 6401 + protein coding gene peptidylprolyl isomerase B
Tssr85745 9 66061360 to 66061380 20 + TSS region transcription start site region 85745
Snx22 9 66065176 to 66069719 4543 - protein coding gene sorting nexin 22
Cpgi21962 9 66068908 to 66069924 1016 CpG island CpG island 21962
Tssr90228 9 66069702 to 66069741 39 - TSS region transcription start site region 90228
Tssr90229 9 66069743 to 66069772 29 - TSS region transcription start site region 90229
Snx1 9 66088127 to 66124886 36759 - protein coding gene sorting nexin 1
Tssr90230 9 66093578 to 66093588 10 - TSS region transcription start site region 90230
Tssr90231 9 66094106 to 66094116 10 - TSS region transcription start site region 90231
Tssr90232 9 66096179 to 66096183 4 - TSS region transcription start site region 90232
Cpgi21963 9 66124405 to 66124987 582 CpG island CpG island 21963
Tssr90233 9 66124709 to 66124720 11 - TSS region transcription start site region 90233
Tssr90234 9 66124761 to 66124805 44 - TSS region transcription start site region 90234
Tssr90235 9 66124824 to 66124846 22 - TSS region transcription start site region 90235
Tssr90236 9 66124851 to 66124871 20 - TSS region transcription start site region 90236
Tssr90237 9 66124872 to 66124883 11 - TSS region transcription start site region 90237
Tssr90238 9 66126473 to 66126487 14 - TSS region transcription start site region 90238
Cpgi21964 9 66126489 to 66126857 368 CpG island CpG island 21964
Tssr90239 9 66126559 to 66126603 44 - TSS region transcription start site region 90239
Ciao2a 9 66126611 to 66138955 12344 + protein coding gene cytosolic iron-sulfur assembly component 2A
Tssr85746 9 66126637 to 66126649 12 + TSS region transcription start site region 85746
Tssr85747 9 66126655 to 66126722 67 + TSS region transcription start site region 85747
Tssr85748 9 66126727 to 66126744 17 + TSS region transcription start site region 85748
Tssr85749 9 66126753 to 66126781 28 + TSS region transcription start site region 85749
Tssr85750 9 66126798 to 66126832 34 + TSS region transcription start site region 85750
Tssr85751 9 66145022 to 66145028 6 + TSS region transcription start site region 85751
Cpgi21965 9 66157807 to 66158736 929 CpG island CpG island 21965
Tssr85752 9 66158206 to 66158271 65 + TSS region transcription start site region 85752
Dapk2 9 66158226 to 66272242 114016 + protein coding gene death-associated protein kinase 2
D9Mit233 9 66175697 to 66175844 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 233
D9Mit233.1 9 66175806 to 66175927 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 233.1
Tssr85753 9 66189251 to 66189256 5 + TSS region transcription start site region 85753
Cpgi21966 9 66220478 to 66220891 413 CpG island CpG island 21966
Gm19247 9 66273293 to 66273618 325 + pseudogene predicted gene, 19247
Gm39364 9 66299624 to 66301088 1464 - lncRNA gene predicted gene, 39364
Tssr90240 9 66300863 to 66300871 8 - TSS region transcription start site region 90240
Cpgi21967 9 66349806 to 66351328 1522 CpG island CpG island 21967
Tssr85754 9 66350066 to 66350085 19 + TSS region transcription start site region 85754
Gm30447 9 66350324 to 66351221 897 - protein coding gene predicted gene, 30447
Tssr85755 9 66350416 to 66350435 19 + TSS region transcription start site region 85755
Tssr85756 9 66350445 to 66350454 9 + TSS region transcription start site region 85756
Herc1 9 66350450 to 66508775 158325 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Tssr85757 9 66350465 to 66350515 50 + TSS region transcription start site region 85757
Tssr85758 9 66350559 to 66350566 7 + TSS region transcription start site region 85758
Gm23428 9 66360641 to 66360742 101 - snRNA gene predicted gene, 23428
Tssr85759 9 66373248 to 66373252 4 + TSS region transcription start site region 85759
Tssr85760 9 66394323 to 66394329 6 + TSS region transcription start site region 85760
Gm28379 9 66417746 to 66448496 30750 - antisense lncRNA gene predicted gene 28379
Tssr85761 9 66430516 to 66430547 31 + TSS region transcription start site region 85761
Tssr85762 9 66445627 to 66445639 12 + TSS region transcription start site region 85762
Tssr85763 9 66448046 to 66448069 23 + TSS region transcription start site region 85763
Tssr85764 9 66468619 to 66468623 4 + TSS region transcription start site region 85764
Fbxl22 9 66508459 to 66514593 6134 - protein coding gene F-box and leucine-rich repeat protein 22
Cpgi21968 9 66511162 to 66512661 1499 CpG island CpG island 21968
Tssr90241 9 66511725 to 66511774 49 - TSS region transcription start site region 90241
Tssr90242 9 66512453 to 66512488 35 - TSS region transcription start site region 90242
Tssr85765 9 66512605 to 66512632 27 + TSS region transcription start site region 85765
Tssr90243 9 66514500 to 66514526 26 - TSS region transcription start site region 90243
Tssr90244 9 66514533 to 66514536 3 - TSS region transcription start site region 90244
Tssr90245 9 66514540 to 66514563 23 - TSS region transcription start site region 90245
Tssr90246 9 66514567 to 66514597 30 - TSS region transcription start site region 90246
Usp3 9 66514639 to 66593115 78476 - protein coding gene ubiquitin specific peptidase 3
Tssr90247 9 66518598 to 66518602 4 - TSS region transcription start site region 90247
Tssr90248 9 66518644 to 66518653 9 - TSS region transcription start site region 90248
Tssr90249 9 66520310 to 66520342 32 - TSS region transcription start site region 90249
Tssr90250 9 66520383 to 66520414 31 - TSS region transcription start site region 90250
Gm15563 9 66572001 to 66582059 10058 + antisense lncRNA gene predicted gene 15563
Tssr90251 9 66576028 to 66576048 20 - TSS region transcription start site region 90251
Tssr90252 9 66580315 to 66580321 6 - TSS region transcription start site region 90252
Tssr90253 9 66580692 to 66580700 8 - TSS region transcription start site region 90253
Tssr90254 9 66583182 to 66583184 2 - TSS region transcription start site region 90254
Tssr90255 9 66590672 to 66590675 3 - TSS region transcription start site region 90255
Cpgi21969 9 66591981 to 66593703 1722 CpG island CpG island 21969
Tssr90256 9 66592817 to 66592826 9 - TSS region transcription start site region 90256
Tssr90257 9 66592945 to 66592969 24 - TSS region transcription start site region 90257
Tssr90258 9 66592972 to 66592985 13 - TSS region transcription start site region 90258
Tssr90259 9 66592993 to 66593024 31 - TSS region transcription start site region 90259
Tssr90260 9 66593029 to 66593041 12 - TSS region transcription start site region 90260
Tssr90261 9 66593062 to 66593071 9 - TSS region transcription start site region 90261
Tssr90262 9 66593079 to 66593099 20 - TSS region transcription start site region 90262
Tssr90263 9 66593106 to 66593120 14 - TSS region transcription start site region 90263
Tssr90264 9 66593122 to 66593131 9 - TSS region transcription start site region 90264
Tssr85766 9 66593229 to 66593240 11 + TSS region transcription start site region 85766
Tssr85767 9 66593505 to 66593550 45 + TSS region transcription start site region 85767
D9Dcr4 9 66618015 to 66618117 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 4
Cpgi21970 9 66713670 to 66713940 270 CpG island CpG island 21970
Car12 9 66713686 to 66766845 53159 + protein coding gene carbonic anhydrase 12
Tssr85768 9 66713709 to 66713716 7 + TSS region transcription start site region 85768
Tssr85769 9 66713719 to 66713736 17 + TSS region transcription start site region 85769
D9Mit303 9 66721748 to 66721871 123 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 303
Tssr85770 9 66754400 to 66754406 6 + TSS region transcription start site region 85770
Aph1b 9 66775202 to 66795490 20288 - protein coding gene aph1 homolog B, gamma secretase subunit
Tssr90265 9 66782279 to 66782283 4 - TSS region transcription start site region 90265
Cpgi21971 9 66795027 to 66796076 1049 CpG island CpG island 21971
Tssr90266 9 66795298 to 66795319 21 - TSS region transcription start site region 90266
Tssr90267 9 66795331 to 66795411 80 - TSS region transcription start site region 90267
Tssr90268 9 66795469 to 66795521 52 - TSS region transcription start site region 90268
Gm10647 9 66797039 to 66799074 2035 + protein coding gene predicted gene 10647
BC050972 9 66798678 to 66804359 5681 - antisense lncRNA gene cDNA sequence BC050972
Tssr90269 9 66804326 to 66804341 15 - TSS region transcription start site region 90269
Tssr90270 9 66804342 to 66804357 15 - TSS region transcription start site region 90270
Ppp1r2-ps4 9 66805306 to 66805938 632 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 4
Cpgi21972 9 66806062 to 66806295 233 CpG island CpG island 21972
Aph1c 9 66814994 to 66834726 19732 - protein coding gene aph1 homolog C, gamma secretase subunit
Cpgi21973 9 66834197 to 66835516 1319 CpG island CpG island 21973
Tssr90271 9 66834622 to 66834634 12 - TSS region transcription start site region 90271
Tssr90272 9 66834659 to 66834677 18 - TSS region transcription start site region 90272
Gm17098 9 66834699 to 66835534 835 + antisense lncRNA gene predicted gene 17098
Tssr90273 9 66834707 to 66834710 3 - TSS region transcription start site region 90273
Tssr90274 9 66834716 to 66834724 8 - TSS region transcription start site region 90274
Rab8b 9 66843664 to 66919687 76023 - protein coding gene RAB8B, member RAS oncogene family
Tssr90275 9 66844370 to 66844381 11 - TSS region transcription start site region 90275
Tssr90276 9 66845318 to 66845327 9 - TSS region transcription start site region 90276
Tssr90277 9 66845538 to 66845552 14 - TSS region transcription start site region 90277
Tssr90278 9 66845627 to 66845642 15 - TSS region transcription start site region 90278
Tssr90279 9 66845661 to 66845681 20 - TSS region transcription start site region 90279
Tssr90280 9 66845690 to 66845704 14 - TSS region transcription start site region 90280
Tssr90281 9 66845752 to 66845841 89 - TSS region transcription start site region 90281
Tssr90282 9 66845843 to 66845884 41 - TSS region transcription start site region 90282
Tssr90283 9 66846277 to 66846299 22 - TSS region transcription start site region 90283
Tssr90284 9 66846360 to 66846383 23 - TSS region transcription start site region 90284
Tssr90285 9 66847595 to 66847621 26 - TSS region transcription start site region 90285
Tssr90286 9 66847625 to 66847643 18 - TSS region transcription start site region 90286
Tssr90287 9 66847667 to 66847682 15 - TSS region transcription start site region 90287
Gm40528 9 66872060 to 66883930 11870 + lncRNA gene predicted gene, 40528
Tssr85771 9 66872559 to 66872594 35 + TSS region transcription start site region 85771
Tssr90288 9 66879061 to 66879072 11 - TSS region transcription start site region 90288
Tssr90289 9 66881546 to 66881548 2 - TSS region transcription start site region 90289
Tssr90290 9 66882456 to 66882466 10 - TSS region transcription start site region 90290