Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65574872-66674883

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Plekho2 9 65552698 to 65580040 27342 - protein coding gene pleckstrin homology domain containing, family O member 2
D9Dcr2 9 65577857 to 65577972 115 DNA segment DNA segment, Chr 9, Derry C. Roopenian 2
D9Mit336 9 65577864 to 65577985 121 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 336
Tssr85713 9 65579220 to 65579231 11 + TSS region transcription start site region 85713
Cpgi21951 9 65579476 to 65580414 938 CpG island CpG island 21951
Tssr90212 9 65580043 to 65580061 18 - TSS region transcription start site region 90212
Tssr90213 9 65580081 to 65580086 5 - TSS region transcription start site region 90213
Cpgi21952 9 65580496 to 65580762 266 CpG island CpG island 21952
Cpgi21953 9 65586866 to 65587073 207 CpG island CpG island 21953
Tssr85714 9 65587149 to 65587185 36 + TSS region transcription start site region 85714
Pif1 9 65587160 to 65595967 8807 + protein coding gene PIF1 5'-to-3' DNA helicase
Tssr85715 9 65587187 to 65587221 34 + TSS region transcription start site region 85715
Cpgi21954 9 65587613 to 65588502 889 CpG island CpG island 21954
Gm10144 9 65599914 to 65600981 1067 - pseudogene predicted pseudogene 10144
Cpgi21955 9 65629106 to 65631573 2467 CpG island CpG island 21955
Tssr90214 9 65629452 to 65629496 44 - TSS region transcription start site region 90214
Tssr85716 9 65629610 to 65629683 73 + TSS region transcription start site region 85716
Rbpms2 9 65629648 to 65660528 30880 + protein coding gene RNA binding protein with multiple splicing 2
Tssr90215 9 65629894 to 65629898 4 - TSS region transcription start site region 90215
Tssr85717 9 65630552 to 65630599 47 + TSS region transcription start site region 85717
Tssr85718 9 65630604 to 65630617 13 + TSS region transcription start site region 85718
Tssr85719 9 65630687 to 65630703 16 + TSS region transcription start site region 85719
Tssr85720 9 65630729 to 65630736 7 + TSS region transcription start site region 85720
Tssr85721 9 65630754 to 65630761 7 + TSS region transcription start site region 85721
Tssr85722 9 65630810 to 65630820 10 + TSS region transcription start site region 85722
Tssr85723 9 65631070 to 65631088 18 + TSS region transcription start site region 85723
Tssr85724 9 65637839 to 65637852 13 + TSS region transcription start site region 85724
Tssr85725 9 65659656 to 65659678 22 + TSS region transcription start site region 85725
Cpgi21956 9 65676426 to 65676876 450 CpG island CpG island 21956
Tssr85726 9 65676517 to 65676556 39 + TSS region transcription start site region 85726
Oaz2 9 65676548 to 65690300 13752 + protein coding gene ornithine decarboxylase antizyme 2
Tssr85727 9 65676566 to 65676621 55 + TSS region transcription start site region 85727
Tssr90216 9 65691393 to 65691397 4 - TSS region transcription start site region 90216
Zfp609 9 65692391 to 65827564 135173 - protein coding gene zinc finger protein 609
Tssr2918 9 65700393 to 65700401 8 + TSS region transcription start site region 2918
Gm30089 9 65739379 to 65739752 373 - pseudogene predicted gene, 30089
Tssr90217 9 65765002 to 65765005 3 - TSS region transcription start site region 90217
Tssr90218 9 65771447 to 65771450 3 - TSS region transcription start site region 90218
Cpgi21957 9 65826968 to 65828211 1243 CpG island CpG island 21957
Tssr90219 9 65827544 to 65827576 32 - TSS region transcription start site region 90219
Tssr90220 9 65827667 to 65827696 29 - TSS region transcription start site region 90220
Tssr90221 9 65827707 to 65827740 33 - TSS region transcription start site region 90221
Trip4 9 65828930 to 65908794 79864 - protein coding gene thyroid hormone receptor interactor 4
Gm30314 9 65832116 to 65841198 9082 + lncRNA gene predicted gene, 30314
n-R5s85 9 65836353 to 65836465 112 + rRNA gene nuclear encoded rRNA 5S 85
Gm16073 9 65838167 to 65838683 516 + pseudogene predicted gene 16073
Cpgi21958 9 65884860 to 65885289 429 CpG island CpG island 21958
Tssr90222 9 65885024 to 65885069 45 - TSS region transcription start site region 90222
Tssr90223 9 65885076 to 65885091 15 - TSS region transcription start site region 90223
Tssr90224 9 65885106 to 65885117 11 - TSS region transcription start site region 90224
Cpgi21959 9 65890177 to 65890358 181 CpG island CpG island 21959
Pclaf 9 65890237 to 65903266 13029 + protein coding gene PCNA clamp associated factor
Tssr85728 9 65890291 to 65890343 52 + TSS region transcription start site region 85728
Tssr85729 9 65890344 to 65890358 14 + TSS region transcription start site region 85729
Tssr85730 9 65890524 to 65890538 14 + TSS region transcription start site region 85730
D030028M11Rik 9 65895921 to 65898262 2341 unclassified gene RIKEN cDNA D030028M11 gene
Tssr85731 9 65896433 to 65896468 35 + TSS region transcription start site region 85731
Gm23248 9 65900201 to 65900308 107 + snRNA gene predicted gene, 23248
Tssr85732 9 65903097 to 65903102 5 + TSS region transcription start site region 85732
Cpgi21960 9 65908776 to 65909824 1048 CpG island CpG island 21960
Tssr90225 9 65908779 to 65908798 19 - TSS region transcription start site region 90225
Tssr90226 9 65908800 to 65908833 33 - TSS region transcription start site region 90226
Csnk1g1 9 65908962 to 66045015 136053 + protein coding gene casein kinase 1, gamma 1
Tssr85733 9 65908967 to 65909019 52 + TSS region transcription start site region 85733
Tssr85734 9 65909023 to 65909083 60 + TSS region transcription start site region 85734
Tssr85735 9 65909090 to 65909101 11 + TSS region transcription start site region 85735
Tssr85736 9 65914330 to 65914331 1 + TSS region transcription start site region 85736
Cd4ts4 9 65923774 to 65923895 121 QTL CD4 T cell subset 4
Pgia5 9 65923774 to 65923895 121 QTL proteoglycan induced arthritis 5
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
D9Mit104 9 65923774 to 65923895 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 104
Tssr85737 9 65924178 to 65924198 20 + TSS region transcription start site region 85737
Tssr85738 9 65924207 to 65924216 9 + TSS region transcription start site region 85738
Gm22657 9 65952314 to 65952445 131 - snoRNA gene predicted gene, 22657
Tssr85739 9 65965937 to 65965940 3 + TSS region transcription start site region 85739
D9Dcr3 9 65986191 to 65986295 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 3
Tssr85740 9 66004654 to 66004688 34 + TSS region transcription start site region 85740
Tssr85741 9 66032507 to 66032511 4 + TSS region transcription start site region 85741
Tssr85742 9 66040472 to 66040499 27 + TSS region transcription start site region 85742
Cpgi21961 9 66059753 to 66060674 921 CpG island CpG island 21961
Tssr90227 9 66059938 to 66059969 31 - TSS region transcription start site region 90227
Tssr85743 9 66060098 to 66060109 11 + TSS region transcription start site region 85743
Tssr2919 9 66060127 to 66060138 11 + TSS region transcription start site region 2919
Tssr2920 9 66060179 to 66060186 7 + TSS region transcription start site region 2920
Tssr85744 9 66060195 to 66060273 78 + TSS region transcription start site region 85744
Ppib 9 66060222 to 66066623 6401 + protein coding gene peptidylprolyl isomerase B
Tssr85745 9 66061360 to 66061380 20 + TSS region transcription start site region 85745
Snx22 9 66065176 to 66069719 4543 - protein coding gene sorting nexin 22
Cpgi21962 9 66068908 to 66069924 1016 CpG island CpG island 21962
Tssr90228 9 66069702 to 66069741 39 - TSS region transcription start site region 90228
Tssr90229 9 66069743 to 66069772 29 - TSS region transcription start site region 90229
Snx1 9 66088127 to 66124886 36759 - protein coding gene sorting nexin 1
Tssr90230 9 66093578 to 66093588 10 - TSS region transcription start site region 90230
Tssr90231 9 66094106 to 66094116 10 - TSS region transcription start site region 90231
Tssr90232 9 66096179 to 66096183 4 - TSS region transcription start site region 90232
Cpgi21963 9 66124405 to 66124987 582 CpG island CpG island 21963
Tssr90233 9 66124709 to 66124720 11 - TSS region transcription start site region 90233
Tssr90234 9 66124761 to 66124805 44 - TSS region transcription start site region 90234
Tssr90235 9 66124824 to 66124846 22 - TSS region transcription start site region 90235
Tssr90236 9 66124851 to 66124871 20 - TSS region transcription start site region 90236
Tssr90237 9 66124872 to 66124883 11 - TSS region transcription start site region 90237
Tssr90238 9 66126473 to 66126487 14 - TSS region transcription start site region 90238
Cpgi21964 9 66126489 to 66126857 368 CpG island CpG island 21964
Tssr90239 9 66126559 to 66126603 44 - TSS region transcription start site region 90239
Ciao2a 9 66126611 to 66138955 12344 + protein coding gene cytosolic iron-sulfur assembly component 2A
Tssr85746 9 66126637 to 66126649 12 + TSS region transcription start site region 85746
Tssr85747 9 66126655 to 66126722 67 + TSS region transcription start site region 85747
Tssr85748 9 66126727 to 66126744 17 + TSS region transcription start site region 85748
Tssr85749 9 66126753 to 66126781 28 + TSS region transcription start site region 85749
Tssr85750 9 66126798 to 66126832 34 + TSS region transcription start site region 85750
Tssr85751 9 66145022 to 66145028 6 + TSS region transcription start site region 85751
Cpgi21965 9 66157807 to 66158736 929 CpG island CpG island 21965
Tssr85752 9 66158206 to 66158271 65 + TSS region transcription start site region 85752
Dapk2 9 66158226 to 66272242 114016 + protein coding gene death-associated protein kinase 2
D9Mit233 9 66175697 to 66175844 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 233
D9Mit233.1 9 66175806 to 66175927 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 233.1
Tssr85753 9 66189251 to 66189256 5 + TSS region transcription start site region 85753
Cpgi21966 9 66220478 to 66220891 413 CpG island CpG island 21966
Gm19247 9 66273293 to 66273618 325 + pseudogene predicted gene, 19247
Gm39364 9 66299624 to 66301088 1464 - lncRNA gene predicted gene, 39364
Tssr90240 9 66300863 to 66300871 8 - TSS region transcription start site region 90240
Cpgi21967 9 66349806 to 66351328 1522 CpG island CpG island 21967
Tssr85754 9 66350066 to 66350085 19 + TSS region transcription start site region 85754
Gm30447 9 66350324 to 66351221 897 - protein coding gene predicted gene, 30447
Tssr85755 9 66350416 to 66350435 19 + TSS region transcription start site region 85755
Tssr85756 9 66350445 to 66350454 9 + TSS region transcription start site region 85756
Herc1 9 66350450 to 66508775 158325 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Tssr85757 9 66350465 to 66350515 50 + TSS region transcription start site region 85757
Tssr85758 9 66350559 to 66350566 7 + TSS region transcription start site region 85758
Gm23428 9 66360641 to 66360742 101 - snRNA gene predicted gene, 23428
Tssr85759 9 66373248 to 66373252 4 + TSS region transcription start site region 85759
Tssr85760 9 66394323 to 66394329 6 + TSS region transcription start site region 85760
Gm28379 9 66417746 to 66448496 30750 - antisense lncRNA gene predicted gene 28379
Tssr85761 9 66430516 to 66430547 31 + TSS region transcription start site region 85761
Tssr85762 9 66445627 to 66445639 12 + TSS region transcription start site region 85762
Tssr85763 9 66448046 to 66448069 23 + TSS region transcription start site region 85763
Tssr85764 9 66468619 to 66468623 4 + TSS region transcription start site region 85764
Fbxl22 9 66508459 to 66514593 6134 - protein coding gene F-box and leucine-rich repeat protein 22
Cpgi21968 9 66511162 to 66512661 1499 CpG island CpG island 21968
Tssr90241 9 66511725 to 66511774 49 - TSS region transcription start site region 90241
Tssr90242 9 66512453 to 66512488 35 - TSS region transcription start site region 90242
Tssr85765 9 66512605 to 66512632 27 + TSS region transcription start site region 85765
Tssr90243 9 66514500 to 66514526 26 - TSS region transcription start site region 90243
Tssr90244 9 66514533 to 66514536 3 - TSS region transcription start site region 90244
Tssr90245 9 66514540 to 66514563 23 - TSS region transcription start site region 90245
Tssr90246 9 66514567 to 66514597 30 - TSS region transcription start site region 90246
Usp3 9 66514639 to 66593115 78476 - protein coding gene ubiquitin specific peptidase 3
Tssr90247 9 66518598 to 66518602 4 - TSS region transcription start site region 90247
Tssr90248 9 66518644 to 66518653 9 - TSS region transcription start site region 90248
Tssr90249 9 66520310 to 66520342 32 - TSS region transcription start site region 90249
Tssr90250 9 66520383 to 66520414 31 - TSS region transcription start site region 90250
Gm15563 9 66572001 to 66582059 10058 + antisense lncRNA gene predicted gene 15563
Tssr90251 9 66576028 to 66576048 20 - TSS region transcription start site region 90251
Tssr90252 9 66580315 to 66580321 6 - TSS region transcription start site region 90252
Tssr90253 9 66580692 to 66580700 8 - TSS region transcription start site region 90253
Tssr90254 9 66583182 to 66583184 2 - TSS region transcription start site region 90254
Tssr90255 9 66590672 to 66590675 3 - TSS region transcription start site region 90255
Cpgi21969 9 66591981 to 66593703 1722 CpG island CpG island 21969
Tssr90256 9 66592817 to 66592826 9 - TSS region transcription start site region 90256
Tssr90257 9 66592945 to 66592969 24 - TSS region transcription start site region 90257
Tssr90258 9 66592972 to 66592985 13 - TSS region transcription start site region 90258
Tssr90259 9 66592993 to 66593024 31 - TSS region transcription start site region 90259
Tssr90260 9 66593029 to 66593041 12 - TSS region transcription start site region 90260
Tssr90261 9 66593062 to 66593071 9 - TSS region transcription start site region 90261
Tssr90262 9 66593079 to 66593099 20 - TSS region transcription start site region 90262
Tssr90263 9 66593106 to 66593120 14 - TSS region transcription start site region 90263
Tssr90264 9 66593122 to 66593131 9 - TSS region transcription start site region 90264
Tssr85766 9 66593229 to 66593240 11 + TSS region transcription start site region 85766
Tssr85767 9 66593505 to 66593550 45 + TSS region transcription start site region 85767
D9Dcr4 9 66618015 to 66618117 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 4