Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65434648-65855528

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21948 9 65435594 to 65436258 664 CpG island CpG island 21948
Tssr85701 9 65435766 to 65435793 27 + TSS region transcription start site region 85701
Mtfmt 9 65435782 to 65453054 17272 + protein coding gene mitochondrial methionyl-tRNA formyltransferase
Tssr85702 9 65435797 to 65435845 48 + TSS region transcription start site region 85702
D9Mit362 9 65445717 to 65445824 107 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-362
Gm47270 9 65453615 to 65460399 6784 + lincRNA gene predicted gene, 47270
Cpgi21949 9 65460683 to 65461454 771 CpG island CpG island 21949
Tssr2916 9 65460912 to 65460917 5 + TSS region transcription start site region 2916
Tssr85703 9 65460926 to 65460983 57 + TSS region transcription start site region 85703
Spg21 9 65460947 to 65488470 27523 + protein coding gene SPG21, maspardin
Tssr85704 9 65460984 to 65460993 9 + TSS region transcription start site region 85704
Tssr85705 9 65461321 to 65461351 30 + TSS region transcription start site region 85705
Tssr85706 9 65462538 to 65462542 4 + TSS region transcription start site region 85706
Tssr85707 9 65462665 to 65462672 7 + TSS region transcription start site region 85707
Tssr85708 9 65462795 to 65462840 45 + TSS region transcription start site region 85708
Milac3 9 65465164 to 65465164 0 QTL methamphetamine induced locomotor activation 3
Ankdd1a 9 65488470 to 65520193 31723 - protein coding gene ankyrin repeat and death domain containing 1A
Tssr90185 9 65499911 to 65499915 4 - TSS region transcription start site region 90185
Tssr90186 9 65512706 to 65512719 13 - TSS region transcription start site region 90186
Cpgi21950 9 65520191 to 65520435 244 CpG island CpG island 21950
Gm17749 9 65521106 to 65529806 8700 - unclassified non-coding RNA gene predicted gene, 17749
Tssr90187 9 65529781 to 65529828 47 - TSS region transcription start site region 90187
Tssr90188 9 65536148 to 65536162 14 - TSS region transcription start site region 90188
Tssr85709 9 65541876 to 65541901 25 + TSS region transcription start site region 85709
Tssr2917 9 65541916 to 65541934 18 + TSS region transcription start site region 2917
Tssr90189 9 65542346 to 65542367 21 - TSS region transcription start site region 90189
Tssr85710 9 65545938 to 65545964 26 + TSS region transcription start site region 85710
Tssr85711 9 65546483 to 65546522 39 + TSS region transcription start site region 85711
Tssr85712 9 65551287 to 65551303 16 + TSS region transcription start site region 85712
Tssr90190 9 65552038 to 65552063 25 - TSS region transcription start site region 90190
Tssr90191 9 65552100 to 65552118 18 - TSS region transcription start site region 90191
Tssr90192 9 65552244 to 65552256 12 - TSS region transcription start site region 90192
Tssr90193 9 65552355 to 65552366 11 - TSS region transcription start site region 90193
Tssr90194 9 65552373 to 65552384 11 - TSS region transcription start site region 90194
Plekho2 9 65552698 to 65580040 27342 - protein coding gene pleckstrin homology domain containing, family O member 2
Tssr90195 9 65554755 to 65554806 51 - TSS region transcription start site region 90195
Tssr90196 9 65555127 to 65555148 21 - TSS region transcription start site region 90196
Tssr90197 9 65555166 to 65555184 18 - TSS region transcription start site region 90197
Tssr90198 9 65555192 to 65555203 11 - TSS region transcription start site region 90198
Tssr90199 9 65555302 to 65555321 19 - TSS region transcription start site region 90199
Tssr90200 9 65555459 to 65555475 16 - TSS region transcription start site region 90200
Tssr90201 9 65555530 to 65555544 14 - TSS region transcription start site region 90201
Tssr90202 9 65556044 to 65556071 27 - TSS region transcription start site region 90202
Tssr90203 9 65556625 to 65556659 34 - TSS region transcription start site region 90203
Tssr90204 9 65556866 to 65556888 22 - TSS region transcription start site region 90204
Tssr90205 9 65562149 to 65562163 14 - TSS region transcription start site region 90205
Tssr90206 9 65562164 to 65562180 16 - TSS region transcription start site region 90206
Tssr90207 9 65562181 to 65562190 9 - TSS region transcription start site region 90207
Tssr90208 9 65567703 to 65567734 31 - TSS region transcription start site region 90208
Tssr90209 9 65571791 to 65571823 32 - TSS region transcription start site region 90209
Tssr90210 9 65573007 to 65573054 47 - TSS region transcription start site region 90210
Tssr90211 9 65574689 to 65574705 16 - TSS region transcription start site region 90211
D9Dcr2 9 65577857 to 65577972 115 DNA segment DNA segment, Chr 9, Derry C. Roopenian 2
D9Mit336 9 65577864 to 65577985 121 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 336
Tssr85713 9 65579220 to 65579231 11 + TSS region transcription start site region 85713
Cpgi21951 9 65579476 to 65580414 938 CpG island CpG island 21951
Tssr90212 9 65580043 to 65580061 18 - TSS region transcription start site region 90212
Tssr90213 9 65580081 to 65580086 5 - TSS region transcription start site region 90213
Cpgi21952 9 65580496 to 65580762 266 CpG island CpG island 21952
Cpgi21953 9 65586866 to 65587073 207 CpG island CpG island 21953
Tssr85714 9 65587149 to 65587185 36 + TSS region transcription start site region 85714
Pif1 9 65587160 to 65595967 8807 + protein coding gene PIF1 5'-to-3' DNA helicase
Tssr85715 9 65587187 to 65587221 34 + TSS region transcription start site region 85715
Cpgi21954 9 65587613 to 65588502 889 CpG island CpG island 21954
Gm10144 9 65599914 to 65600981 1067 - pseudogene predicted pseudogene 10144
Cpgi21955 9 65629106 to 65631573 2467 CpG island CpG island 21955
Tssr90214 9 65629452 to 65629496 44 - TSS region transcription start site region 90214
Tssr85716 9 65629610 to 65629683 73 + TSS region transcription start site region 85716
Rbpms2 9 65629648 to 65660528 30880 + protein coding gene RNA binding protein with multiple splicing 2
Tssr90215 9 65629894 to 65629898 4 - TSS region transcription start site region 90215
Tssr85717 9 65630552 to 65630599 47 + TSS region transcription start site region 85717
Tssr85718 9 65630604 to 65630617 13 + TSS region transcription start site region 85718
Tssr85719 9 65630687 to 65630703 16 + TSS region transcription start site region 85719
Tssr85720 9 65630729 to 65630736 7 + TSS region transcription start site region 85720
Tssr85721 9 65630754 to 65630761 7 + TSS region transcription start site region 85721
Tssr85722 9 65630810 to 65630820 10 + TSS region transcription start site region 85722
Tssr85723 9 65631070 to 65631088 18 + TSS region transcription start site region 85723
Tssr85724 9 65637839 to 65637852 13 + TSS region transcription start site region 85724
Tssr85725 9 65659656 to 65659678 22 + TSS region transcription start site region 85725
Cpgi21956 9 65676426 to 65676876 450 CpG island CpG island 21956
Tssr85726 9 65676517 to 65676556 39 + TSS region transcription start site region 85726
Oaz2 9 65676548 to 65690300 13752 + protein coding gene ornithine decarboxylase antizyme 2
Tssr85727 9 65676566 to 65676621 55 + TSS region transcription start site region 85727
Tssr90216 9 65691393 to 65691397 4 - TSS region transcription start site region 90216
Zfp609 9 65692391 to 65827564 135173 - protein coding gene zinc finger protein 609
Tssr2918 9 65700393 to 65700401 8 + TSS region transcription start site region 2918
Gm30089 9 65739379 to 65739752 373 - pseudogene predicted gene, 30089
Tssr90217 9 65765002 to 65765005 3 - TSS region transcription start site region 90217
Tssr90218 9 65771447 to 65771450 3 - TSS region transcription start site region 90218
Cpgi21957 9 65826968 to 65828211 1243 CpG island CpG island 21957
Tssr90219 9 65827544 to 65827576 32 - TSS region transcription start site region 90219
Tssr90220 9 65827667 to 65827696 29 - TSS region transcription start site region 90220
Tssr90221 9 65827707 to 65827740 33 - TSS region transcription start site region 90221
Trip4 9 65828930 to 65908794 79864 - protein coding gene thyroid hormone receptor interactor 4
Gm30314 9 65832116 to 65841198 9082 + lncRNA gene predicted gene, 30314
n-R5s85 9 65836353 to 65836465 112 + rRNA gene nuclear encoded rRNA 5S 85
Gm16073 9 65838167 to 65838683 516 + pseudogene predicted gene 16073