Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65180166-65930184

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Igdcc3 9 65141189 to 65185872 44683 + protein coding gene immunoglobulin superfamily, DCC subclass, member 3
Tssr85668 9 65185752 to 65185767 15 + TSS region transcription start site region 85668
Tssr85669 9 65188863 to 65188864 1 + TSS region transcription start site region 85669
Gm40527 9 65193232 to 65212264 19032 + lncRNA gene predicted gene, 40527
Tssr85670 9 65195374 to 65195381 7 + TSS region transcription start site region 85670
Tssr85671 9 65195389 to 65195392 3 + TSS region transcription start site region 85671
Gm25313 9 65196572 to 65196687 115 - snRNA gene predicted gene, 25313
Rnu5g 9 65201726 to 65201841 115 - snRNA gene RNA, U5G small nuclear
Tssr85672 9 65208547 to 65208557 10 + TSS region transcription start site region 85672
Parp16 9 65214379 to 65239220 24841 + protein coding gene poly (ADP-ribose) polymerase family, member 16
Tssr85673 9 65214663 to 65214701 38 + TSS region transcription start site region 85673
Cpgi21942 9 65214823 to 65215849 1026 CpG island CpG island 21942
Tssr85674 9 65215099 to 65215176 77 + TSS region transcription start site region 85674
Tssr85675 9 65215341 to 65215387 46 + TSS region transcription start site region 85675
Gm36538 9 65233847 to 65265616 31769 - lncRNA gene predicted gene, 36538
Tssr85676 9 65235879 to 65235884 5 + TSS region transcription start site region 85676
Tssr2915 9 65262809 to 65262811 2 + TSS region transcription start site region 2915
Tssr85677 9 65265173 to 65265187 14 + TSS region transcription start site region 85677
Cilp 9 65265180 to 65280605 15425 + protein coding gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase
Tssr85678 9 65265673 to 65265693 20 + TSS region transcription start site region 85678
Cpgi21943 9 65293995 to 65295058 1063 CpG island CpG island 21943
Tssr85679 9 65294157 to 65294169 12 + TSS region transcription start site region 85679
Tssr85680 9 65294179 to 65294204 25 + TSS region transcription start site region 85680
Clpx 9 65294260 to 65330658 36398 + protein coding gene caseinolytic mitochondrial matrix peptidase chaperone subunit
Tssr85681 9 65294275 to 65294341 66 + TSS region transcription start site region 85681
Tssr85682 9 65294370 to 65294375 5 + TSS region transcription start site region 85682
Tssr85683 9 65294395 to 65294417 22 + TSS region transcription start site region 85683
Tssr85684 9 65294427 to 65294437 10 + TSS region transcription start site region 85684
Tssr85685 9 65294440 to 65294444 4 + TSS region transcription start site region 85685
Tssr85686 9 65294557 to 65294576 19 + TSS region transcription start site region 85686
Gm16218 9 65297532 to 65297919 387 - pseudogene predicted gene 16218
D9Ertd338e 9 65303062 to 65303271 209 DNA segment DNA segment, Chr 9, ERATO Doi 338, expressed
Tssr85687 9 65312814 to 65312835 21 + TSS region transcription start site region 85687
Gm39363 9 65332520 to 65345607 13087 + lincRNA gene predicted gene, 39363
Tssr85688 9 65332554 to 65332570 16 + TSS region transcription start site region 85688
Tssr85689 9 65332572 to 65332579 7 + TSS region transcription start site region 85689
Gm19219 9 65336174 to 65336897 723 - pseudogene predicted gene, 19219
Gm47192 9 65341988 to 65342174 186 - pseudogene predicted gene, 47192
Cpgi21944 9 65345874 to 65347181 1307 CpG island CpG island 21944
Tssr85690 9 65346066 to 65346077 11 + TSS region transcription start site region 85690
Tssr85691 9 65346091 to 65346129 38 + TSS region transcription start site region 85691
Pdcd7 9 65346104 to 65359643 13539 + protein coding gene programmed cell death 7
Tssr85692 9 65361023 to 65361047 24 + TSS region transcription start site region 85692
Ubap1l 9 65361041 to 65380377 19336 + protein coding gene ubiquitin-associated protein 1-like
Tssr85693 9 65361049 to 65361056 7 + TSS region transcription start site region 85693
Gm17875 9 65364889 to 65365495 606 + pseudogene predicted gene, 17875
Tssr85694 9 65371673 to 65371686 13 + TSS region transcription start site region 85694
Tssr85695 9 65371695 to 65371708 13 + TSS region transcription start site region 85695
Cpgi21945 9 65371774 to 65372186 412 CpG island CpG island 21945
Kbtbd13 9 65388684 to 65391652 2968 - protein coding gene kelch repeat and BTB (POZ) domain containing 13
Cpgi21946 9 65390419 to 65391919 1500 CpG island CpG island 21946
Cpgi21947 9 65398245 to 65398754 509 CpG island CpG island 21947
Tssr90173 9 65398395 to 65398400 5 - TSS region transcription start site region 90173
Rasl12 9 65398506 to 65414853 16347 + protein coding gene RAS-like, family 12
Tssr85696 9 65398507 to 65398580 73 + TSS region transcription start site region 85696
Tssr85697 9 65400868 to 65400879 11 + TSS region transcription start site region 85697
Tssr85698 9 65400897 to 65400912 15 + TSS region transcription start site region 85698
Slc51b 9 65412753 to 65422773 10020 - protein coding gene solute carrier family 51, beta subunit
Tssr85699 9 65412771 to 65412796 25 + TSS region transcription start site region 85699
Tssr85700 9 65412917 to 65412934 17 + TSS region transcription start site region 85700
D9Mit360 9 65415984 to 65416114 130 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-360
Tssr90174 9 65422776 to 65422777 1 - TSS region transcription start site region 90174
Tssr90175 9 65422780 to 65422791 11 - TSS region transcription start site region 90175
Tssr90176 9 65422834 to 65422848 14 - TSS region transcription start site region 90176
Tssr90177 9 65422858 to 65422873 15 - TSS region transcription start site region 90177
Tssr90178 9 65422895 to 65422910 15 - TSS region transcription start site region 90178
Tssr90179 9 65422949 to 65422961 12 - TSS region transcription start site region 90179
Tssr90180 9 65422983 to 65422994 11 - TSS region transcription start site region 90180
Tssr90181 9 65423011 to 65423022 11 - TSS region transcription start site region 90181
Tssr90182 9 65423028 to 65423042 14 - TSS region transcription start site region 90182
Tssr90183 9 65423092 to 65423105 13 - TSS region transcription start site region 90183
Tssr90184 9 65423244 to 65423256 12 - TSS region transcription start site region 90184
Cpgi21948 9 65435594 to 65436258 664 CpG island CpG island 21948
Tssr85701 9 65435766 to 65435793 27 + TSS region transcription start site region 85701
Mtfmt 9 65435782 to 65453054 17272 + protein coding gene mitochondrial methionyl-tRNA formyltransferase
Tssr85702 9 65435797 to 65435845 48 + TSS region transcription start site region 85702
D9Mit362 9 65445717 to 65445824 107 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-362
Gm47270 9 65453615 to 65460399 6784 + lincRNA gene predicted gene, 47270
Cpgi21949 9 65460683 to 65461454 771 CpG island CpG island 21949
Tssr2916 9 65460912 to 65460917 5 + TSS region transcription start site region 2916
Tssr85703 9 65460926 to 65460983 57 + TSS region transcription start site region 85703
Spg21 9 65460947 to 65488470 27523 + protein coding gene SPG21, maspardin
Tssr85704 9 65460984 to 65460993 9 + TSS region transcription start site region 85704
Tssr85705 9 65461321 to 65461351 30 + TSS region transcription start site region 85705
Tssr85706 9 65462538 to 65462542 4 + TSS region transcription start site region 85706
Tssr85707 9 65462665 to 65462672 7 + TSS region transcription start site region 85707
Tssr85708 9 65462795 to 65462840 45 + TSS region transcription start site region 85708
Milac3 9 65465164 to 65465164 0 QTL methamphetamine induced locomotor activation 3
Ankdd1a 9 65488470 to 65520193 31723 - protein coding gene ankyrin repeat and death domain containing 1A
Tssr90185 9 65499911 to 65499915 4 - TSS region transcription start site region 90185
Tssr90186 9 65512706 to 65512719 13 - TSS region transcription start site region 90186
Cpgi21950 9 65520191 to 65520435 244 CpG island CpG island 21950
Gm17749 9 65521106 to 65529806 8700 - unclassified non-coding RNA gene predicted gene, 17749
Tssr90187 9 65529781 to 65529828 47 - TSS region transcription start site region 90187
Tssr90188 9 65536148 to 65536162 14 - TSS region transcription start site region 90188
Tssr85709 9 65541876 to 65541901 25 + TSS region transcription start site region 85709
Tssr2917 9 65541916 to 65541934 18 + TSS region transcription start site region 2917
Tssr90189 9 65542346 to 65542367 21 - TSS region transcription start site region 90189
Tssr85710 9 65545938 to 65545964 26 + TSS region transcription start site region 85710
Tssr85711 9 65546483 to 65546522 39 + TSS region transcription start site region 85711
Tssr85712 9 65551287 to 65551303 16 + TSS region transcription start site region 85712
Tssr90190 9 65552038 to 65552063 25 - TSS region transcription start site region 90190
Tssr90191 9 65552100 to 65552118 18 - TSS region transcription start site region 90191
Tssr90192 9 65552244 to 65552256 12 - TSS region transcription start site region 90192
Tssr90193 9 65552355 to 65552366 11 - TSS region transcription start site region 90193
Tssr90194 9 65552373 to 65552384 11 - TSS region transcription start site region 90194
Plekho2 9 65552698 to 65580040 27342 - protein coding gene pleckstrin homology domain containing, family O member 2
Tssr90195 9 65554755 to 65554806 51 - TSS region transcription start site region 90195
Tssr90196 9 65555127 to 65555148 21 - TSS region transcription start site region 90196
Tssr90197 9 65555166 to 65555184 18 - TSS region transcription start site region 90197
Tssr90198 9 65555192 to 65555203 11 - TSS region transcription start site region 90198
Tssr90199 9 65555302 to 65555321 19 - TSS region transcription start site region 90199
Tssr90200 9 65555459 to 65555475 16 - TSS region transcription start site region 90200
Tssr90201 9 65555530 to 65555544 14 - TSS region transcription start site region 90201
Tssr90202 9 65556044 to 65556071 27 - TSS region transcription start site region 90202
Tssr90203 9 65556625 to 65556659 34 - TSS region transcription start site region 90203
Tssr90204 9 65556866 to 65556888 22 - TSS region transcription start site region 90204
Tssr90205 9 65562149 to 65562163 14 - TSS region transcription start site region 90205
Tssr90206 9 65562164 to 65562180 16 - TSS region transcription start site region 90206
Tssr90207 9 65562181 to 65562190 9 - TSS region transcription start site region 90207
Tssr90208 9 65567703 to 65567734 31 - TSS region transcription start site region 90208
Tssr90209 9 65571791 to 65571823 32 - TSS region transcription start site region 90209
Tssr90210 9 65573007 to 65573054 47 - TSS region transcription start site region 90210
Tssr90211 9 65574689 to 65574705 16 - TSS region transcription start site region 90211
D9Dcr2 9 65577857 to 65577972 115 DNA segment DNA segment, Chr 9, Derry C. Roopenian 2
D9Mit336 9 65577864 to 65577985 121 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 336
Tssr85713 9 65579220 to 65579231 11 + TSS region transcription start site region 85713
Cpgi21951 9 65579476 to 65580414 938 CpG island CpG island 21951
Tssr90212 9 65580043 to 65580061 18 - TSS region transcription start site region 90212
Tssr90213 9 65580081 to 65580086 5 - TSS region transcription start site region 90213
Cpgi21952 9 65580496 to 65580762 266 CpG island CpG island 21952
Cpgi21953 9 65586866 to 65587073 207 CpG island CpG island 21953
Tssr85714 9 65587149 to 65587185 36 + TSS region transcription start site region 85714
Pif1 9 65587160 to 65595967 8807 + protein coding gene PIF1 5'-to-3' DNA helicase
Tssr85715 9 65587187 to 65587221 34 + TSS region transcription start site region 85715
Cpgi21954 9 65587613 to 65588502 889 CpG island CpG island 21954
Gm10144 9 65599914 to 65600981 1067 - pseudogene predicted pseudogene 10144
Cpgi21955 9 65629106 to 65631573 2467 CpG island CpG island 21955
Tssr90214 9 65629452 to 65629496 44 - TSS region transcription start site region 90214
Tssr85716 9 65629610 to 65629683 73 + TSS region transcription start site region 85716
Rbpms2 9 65629648 to 65660528 30880 + protein coding gene RNA binding protein with multiple splicing 2
Tssr90215 9 65629894 to 65629898 4 - TSS region transcription start site region 90215
Tssr85717 9 65630552 to 65630599 47 + TSS region transcription start site region 85717
Tssr85718 9 65630604 to 65630617 13 + TSS region transcription start site region 85718
Tssr85719 9 65630687 to 65630703 16 + TSS region transcription start site region 85719
Tssr85720 9 65630729 to 65630736 7 + TSS region transcription start site region 85720
Tssr85721 9 65630754 to 65630761 7 + TSS region transcription start site region 85721
Tssr85722 9 65630810 to 65630820 10 + TSS region transcription start site region 85722
Tssr85723 9 65631070 to 65631088 18 + TSS region transcription start site region 85723
Tssr85724 9 65637839 to 65637852 13 + TSS region transcription start site region 85724
Tssr85725 9 65659656 to 65659678 22 + TSS region transcription start site region 85725
Cpgi21956 9 65676426 to 65676876 450 CpG island CpG island 21956
Tssr85726 9 65676517 to 65676556 39 + TSS region transcription start site region 85726
Oaz2 9 65676548 to 65690300 13752 + protein coding gene ornithine decarboxylase antizyme 2
Tssr85727 9 65676566 to 65676621 55 + TSS region transcription start site region 85727
Tssr90216 9 65691393 to 65691397 4 - TSS region transcription start site region 90216
Zfp609 9 65692391 to 65827564 135173 - protein coding gene zinc finger protein 609
Tssr2918 9 65700393 to 65700401 8 + TSS region transcription start site region 2918
Gm30089 9 65739379 to 65739752 373 - pseudogene predicted gene, 30089
Tssr90217 9 65765002 to 65765005 3 - TSS region transcription start site region 90217
Tssr90218 9 65771447 to 65771450 3 - TSS region transcription start site region 90218
Cpgi21957 9 65826968 to 65828211 1243 CpG island CpG island 21957
Tssr90219 9 65827544 to 65827576 32 - TSS region transcription start site region 90219
Tssr90220 9 65827667 to 65827696 29 - TSS region transcription start site region 90220
Tssr90221 9 65827707 to 65827740 33 - TSS region transcription start site region 90221
Trip4 9 65828930 to 65908794 79864 - protein coding gene thyroid hormone receptor interactor 4
Gm30314 9 65832116 to 65841198 9082 + lncRNA gene predicted gene, 30314
n-R5s85 9 65836353 to 65836465 112 + rRNA gene nuclear encoded rRNA 5S 85
Gm16073 9 65838167 to 65838683 516 + pseudogene predicted gene 16073
Cpgi21958 9 65884860 to 65885289 429 CpG island CpG island 21958
Tssr90222 9 65885024 to 65885069 45 - TSS region transcription start site region 90222
Tssr90223 9 65885076 to 65885091 15 - TSS region transcription start site region 90223
Tssr90224 9 65885106 to 65885117 11 - TSS region transcription start site region 90224
Cpgi21959 9 65890177 to 65890358 181 CpG island CpG island 21959
Pclaf 9 65890237 to 65903266 13029 + protein coding gene PCNA clamp associated factor
Tssr85728 9 65890291 to 65890343 52 + TSS region transcription start site region 85728
Tssr85729 9 65890344 to 65890358 14 + TSS region transcription start site region 85729
Tssr85730 9 65890524 to 65890538 14 + TSS region transcription start site region 85730
D030028M11Rik 9 65895921 to 65898262 2341 unclassified gene RIKEN cDNA D030028M11 gene
Tssr85731 9 65896433 to 65896468 35 + TSS region transcription start site region 85731
Gm23248 9 65900201 to 65900308 107 + snRNA gene predicted gene, 23248
Tssr85732 9 65903097 to 65903102 5 + TSS region transcription start site region 85732
Cpgi21960 9 65908776 to 65909824 1048 CpG island CpG island 21960
Tssr90225 9 65908779 to 65908798 19 - TSS region transcription start site region 90225
Tssr90226 9 65908800 to 65908833 33 - TSS region transcription start site region 90226
Csnk1g1 9 65908962 to 66045015 136053 + protein coding gene casein kinase 1, gamma 1
Tssr85733 9 65908967 to 65909019 52 + TSS region transcription start site region 85733
Tssr85734 9 65909023 to 65909083 60 + TSS region transcription start site region 85734
Tssr85735 9 65909090 to 65909101 11 + TSS region transcription start site region 85735
Tssr85736 9 65914330 to 65914331 1 + TSS region transcription start site region 85736
D9Mit104 9 65923774 to 65923895 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 104
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
Pgia5 9 65923774 to 65923895 121 QTL proteoglycan induced arthritis 5
Cd4ts4 9 65923774 to 65923895 121 QTL CD4 T cell subset 4
Tssr85737 9 65924178 to 65924198 20 + TSS region transcription start site region 85737
Tssr85738 9 65924207 to 65924216 9 + TSS region transcription start site region 85738