Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65169370-65419375

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igdcc3 9 65141189 to 65185872 44683 + protein coding gene immunoglobulin superfamily, DCC subclass, member 3
Tssr90171 9 65175272 to 65175278 6 - TSS region transcription start site region 90171
Tssr90172 9 65175745 to 65175747 2 - TSS region transcription start site region 90172
Tssr85668 9 65185752 to 65185767 15 + TSS region transcription start site region 85668
Tssr85669 9 65188863 to 65188864 1 + TSS region transcription start site region 85669
Gm40527 9 65193232 to 65212264 19032 + lncRNA gene predicted gene, 40527
Tssr85670 9 65195374 to 65195381 7 + TSS region transcription start site region 85670
Tssr85671 9 65195389 to 65195392 3 + TSS region transcription start site region 85671
Gm25313 9 65196572 to 65196687 115 - snRNA gene predicted gene, 25313
Rnu5g 9 65201726 to 65201841 115 - snRNA gene RNA, U5G small nuclear
Tssr85672 9 65208547 to 65208557 10 + TSS region transcription start site region 85672
Parp16 9 65214379 to 65239220 24841 + protein coding gene poly (ADP-ribose) polymerase family, member 16
Tssr85673 9 65214663 to 65214701 38 + TSS region transcription start site region 85673
Cpgi21942 9 65214823 to 65215849 1026 CpG island CpG island 21942
Tssr85674 9 65215099 to 65215176 77 + TSS region transcription start site region 85674
Tssr85675 9 65215341 to 65215387 46 + TSS region transcription start site region 85675
Gm36538 9 65233847 to 65265616 31769 - lncRNA gene predicted gene, 36538
Tssr85676 9 65235879 to 65235884 5 + TSS region transcription start site region 85676
Tssr2915 9 65262809 to 65262811 2 + TSS region transcription start site region 2915
Tssr85677 9 65265173 to 65265187 14 + TSS region transcription start site region 85677
Cilp 9 65265180 to 65280605 15425 + protein coding gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase
Tssr85678 9 65265673 to 65265693 20 + TSS region transcription start site region 85678
Cpgi21943 9 65293995 to 65295058 1063 CpG island CpG island 21943
Tssr85679 9 65294157 to 65294169 12 + TSS region transcription start site region 85679
Tssr85680 9 65294179 to 65294204 25 + TSS region transcription start site region 85680
Clpx 9 65294260 to 65330658 36398 + protein coding gene caseinolytic mitochondrial matrix peptidase chaperone subunit
Tssr85681 9 65294275 to 65294341 66 + TSS region transcription start site region 85681
Tssr85682 9 65294370 to 65294375 5 + TSS region transcription start site region 85682
Tssr85683 9 65294395 to 65294417 22 + TSS region transcription start site region 85683
Tssr85684 9 65294427 to 65294437 10 + TSS region transcription start site region 85684
Tssr85685 9 65294440 to 65294444 4 + TSS region transcription start site region 85685
Tssr85686 9 65294557 to 65294576 19 + TSS region transcription start site region 85686
Gm16218 9 65297532 to 65297919 387 - pseudogene predicted gene 16218
D9Ertd338e 9 65303062 to 65303271 209 DNA segment DNA segment, Chr 9, ERATO Doi 338, expressed
Tssr85687 9 65312814 to 65312835 21 + TSS region transcription start site region 85687
Gm39363 9 65332520 to 65345607 13087 + lincRNA gene predicted gene, 39363
Tssr85688 9 65332554 to 65332570 16 + TSS region transcription start site region 85688
Tssr85689 9 65332572 to 65332579 7 + TSS region transcription start site region 85689
Gm19219 9 65336174 to 65336897 723 - pseudogene predicted gene, 19219
Gm47192 9 65341988 to 65342174 186 - pseudogene predicted gene, 47192
Cpgi21944 9 65345874 to 65347181 1307 CpG island CpG island 21944
Tssr85690 9 65346066 to 65346077 11 + TSS region transcription start site region 85690
Tssr85691 9 65346091 to 65346129 38 + TSS region transcription start site region 85691
Pdcd7 9 65346104 to 65359643 13539 + protein coding gene programmed cell death 7
Tssr85692 9 65361023 to 65361047 24 + TSS region transcription start site region 85692
Ubap1l 9 65361041 to 65380377 19336 + protein coding gene ubiquitin-associated protein 1-like
Tssr85693 9 65361049 to 65361056 7 + TSS region transcription start site region 85693
Gm17875 9 65364889 to 65365495 606 + pseudogene predicted gene, 17875
Tssr85694 9 65371673 to 65371686 13 + TSS region transcription start site region 85694
Tssr85695 9 65371695 to 65371708 13 + TSS region transcription start site region 85695
Cpgi21945 9 65371774 to 65372186 412 CpG island CpG island 21945
Kbtbd13 9 65388684 to 65391652 2968 - protein coding gene kelch repeat and BTB (POZ) domain containing 13
Cpgi21946 9 65390419 to 65391919 1500 CpG island CpG island 21946
Cpgi21947 9 65398245 to 65398754 509 CpG island CpG island 21947
Tssr90173 9 65398395 to 65398400 5 - TSS region transcription start site region 90173
Rasl12 9 65398506 to 65414853 16347 + protein coding gene RAS-like, family 12
Tssr85696 9 65398507 to 65398580 73 + TSS region transcription start site region 85696
Tssr85697 9 65400868 to 65400879 11 + TSS region transcription start site region 85697
Tssr85698 9 65400897 to 65400912 15 + TSS region transcription start site region 85698
Slc51b 9 65412753 to 65422773 10020 - protein coding gene solute carrier family 51, beta subunit
Tssr85699 9 65412771 to 65412796 25 + TSS region transcription start site region 85699
Tssr85700 9 65412917 to 65412934 17 + TSS region transcription start site region 85700
D9Mit360 9 65415984 to 65416114 130 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-360