Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Ntta3 | 9 | 19237522 | QTL | neurotensin transcript abundance 3 | ||
Vmbic5 | 9 | 8239686 | QTL | ventral midbrain iron content 5 | ||
Igdcc3 | 9 | 44683 | + | protein coding gene | immunoglobulin superfamily, DCC subclass, member 3 | |
Cpgi21941 | 9 | 1090 | CpG island | CpG island 21941 | ||
Tssr90171 | 9 | 6 | - | TSS region | transcription start site region 90171 | |
Tssr90172 | 9 | 2 | - | TSS region | transcription start site region 90172 | |
Tssr85668 | 9 | 15 | + | TSS region | transcription start site region 85668 | |
Tssr85669 | 9 | 1 | + | TSS region | transcription start site region 85669 | |
Gm40527 | 9 | 19032 | + | lncRNA gene | predicted gene, 40527 | |
Tssr85670 | 9 | 7 | + | TSS region | transcription start site region 85670 | |
Tssr85671 | 9 | 3 | + | TSS region | transcription start site region 85671 | |
Gm25313 | 9 | 115 | - | snRNA gene | predicted gene, 25313 | |
Rnu5g | 9 | 115 | - | snRNA gene | RNA, U5G small nuclear | |
Tssr85672 | 9 | 10 | + | TSS region | transcription start site region 85672 | |
Parp16 | 9 | 24841 | + | protein coding gene | poly (ADP-ribose) polymerase family, member 16 | |
Tssr85673 | 9 | 38 | + | TSS region | transcription start site region 85673 | |
Cpgi21942 | 9 | 1026 | CpG island | CpG island 21942 | ||
Tssr85674 | 9 | 77 | + | TSS region | transcription start site region 85674 | |
Tssr85675 | 9 | 46 | + | TSS region | transcription start site region 85675 | |
Gm36538 | 9 | 31769 | - | lncRNA gene | predicted gene, 36538 | |
Tssr85676 | 9 | 5 | + | TSS region | transcription start site region 85676 | |
Tssr2915 | 9 | 2 | + | TSS region | transcription start site region 2915 | |
Tssr85677 | 9 | 14 | + | TSS region | transcription start site region 85677 | |
Cilp | 9 | 15425 | + | protein coding gene | cartilage intermediate layer protein, nucleotide pyrophosphohydrolase | |
Tssr85678 | 9 | 20 | + | TSS region | transcription start site region 85678 | |
Cpgi21943 | 9 | 1063 | CpG island | CpG island 21943 | ||
Tssr85679 | 9 | 12 | + | TSS region | transcription start site region 85679 | |
Tssr85680 | 9 | 25 | + | TSS region | transcription start site region 85680 | |
Clpx | 9 | 36398 | + | protein coding gene | caseinolytic mitochondrial matrix peptidase chaperone subunit | |
Tssr85681 | 9 | 66 | + | TSS region | transcription start site region 85681 | |
Tssr85682 | 9 | 5 | + | TSS region | transcription start site region 85682 | |
Tssr85683 | 9 | 22 | + | TSS region | transcription start site region 85683 | |
Tssr85684 | 9 | 10 | + | TSS region | transcription start site region 85684 | |
Tssr85685 | 9 | 4 | + | TSS region | transcription start site region 85685 | |
Tssr85686 | 9 | 19 | + | TSS region | transcription start site region 85686 | |
Gm16218 | 9 | 387 | - | pseudogene | predicted gene 16218 | |
D9Ertd338e | 9 | 209 | DNA segment | DNA segment, Chr 9, ERATO Doi 338, expressed | ||
Tssr85687 | 9 | 21 | + | TSS region | transcription start site region 85687 | |
Gm39363 | 9 | 13087 | + | lincRNA gene | predicted gene, 39363 | |
Tssr85688 | 9 | 16 | + | TSS region | transcription start site region 85688 | |
Tssr85689 | 9 | 7 | + | TSS region | transcription start site region 85689 | |
Gm19219 | 9 | 723 | - | pseudogene | predicted gene, 19219 | |
Gm47192 | 9 | 186 | - | pseudogene | predicted gene, 47192 | |
Cpgi21944 | 9 | 1307 | CpG island | CpG island 21944 | ||
Tssr85690 | 9 | 11 | + | TSS region | transcription start site region 85690 | |
Tssr85691 | 9 | 38 | + | TSS region | transcription start site region 85691 | |
Pdcd7 | 9 | 13539 | + | protein coding gene | programmed cell death 7 | |
Tssr85692 | 9 | 24 | + | TSS region | transcription start site region 85692 | |
Ubap1l | 9 | 19336 | + | protein coding gene | ubiquitin-associated protein 1-like | |
Tssr85693 | 9 | 7 | + | TSS region | transcription start site region 85693 | |
Gm17875 | 9 | 606 | + | pseudogene | predicted gene, 17875 | |
Tssr85694 | 9 | 13 | + | TSS region | transcription start site region 85694 | |
Tssr85695 | 9 | 13 | + | TSS region | transcription start site region 85695 | |
Cpgi21945 | 9 | 412 | CpG island | CpG island 21945 | ||
Kbtbd13 | 9 | 2968 | - | protein coding gene | kelch repeat and BTB (POZ) domain containing 13 | |
Cpgi21946 | 9 | 1500 | CpG island | CpG island 21946 | ||
Cpgi21947 | 9 | 509 | CpG island | CpG island 21947 | ||
Tssr90173 | 9 | 5 | - | TSS region | transcription start site region 90173 | |
Rasl12 | 9 | 16347 | + | protein coding gene | RAS-like, family 12 | |
Tssr85696 | 9 | 73 | + | TSS region | transcription start site region 85696 | |
Tssr85697 | 9 | 11 | + | TSS region | transcription start site region 85697 | |
Tssr85698 | 9 | 15 | + | TSS region | transcription start site region 85698 | |
Slc51b | 9 | 10020 | - | protein coding gene | solute carrier family 51, beta subunit | |
Tssr85699 | 9 | 25 | + | TSS region | transcription start site region 85699 | |
Tssr85700 | 9 | 17 | + | TSS region | transcription start site region 85700 | |
D9Mit360 | 9 | 130 | DNA segment | DNA Segment, Chr 9, Massachusetts Institute of Technology-360 | ||
Tssr90174 | 9 | 1 | - | TSS region | transcription start site region 90174 | |
Tssr90175 | 9 | 11 | - | TSS region | transcription start site region 90175 | |
Tssr90176 | 9 | 14 | - | TSS region | transcription start site region 90176 | |
Tssr90177 | 9 | 15 | - | TSS region | transcription start site region 90177 | |
Tssr90178 | 9 | 15 | - | TSS region | transcription start site region 90178 | |
Tssr90179 | 9 | 12 | - | TSS region | transcription start site region 90179 | |
Tssr90180 | 9 | 11 | - | TSS region | transcription start site region 90180 | |
Tssr90181 | 9 | 11 | - | TSS region | transcription start site region 90181 | |
Tssr90182 | 9 | 14 | - | TSS region | transcription start site region 90182 | |
Tssr90183 | 9 | 13 | - | TSS region | transcription start site region 90183 | |
Tssr90184 | 9 | 12 | - | TSS region | transcription start site region 90184 | |
Cpgi21948 | 9 | 664 | CpG island | CpG island 21948 | ||
Tssr85701 | 9 | 27 | + | TSS region | transcription start site region 85701 | |
Mtfmt | 9 | 17272 | + | protein coding gene | mitochondrial methionyl-tRNA formyltransferase | |
Tssr85702 | 9 | 48 | + | TSS region | transcription start site region 85702 | |
D9Mit362 | 9 | 107 | DNA segment | DNA Segment, Chr 9, Massachusetts Institute of Technology-362 | ||
Gm47270 | 9 | 6784 | + | lincRNA gene | predicted gene, 47270 | |
Cpgi21949 | 9 | 771 | CpG island | CpG island 21949 | ||
Tssr2916 | 9 | 5 | + | TSS region | transcription start site region 2916 | |
Tssr85703 | 9 | 57 | + | TSS region | transcription start site region 85703 | |
Spg21 | 9 | 27523 | + | protein coding gene | SPG21, maspardin | |
Tssr85704 | 9 | 9 | + | TSS region | transcription start site region 85704 | |
Tssr85705 | 9 | 30 | + | TSS region | transcription start site region 85705 | |
Tssr85706 | 9 | 4 | + | TSS region | transcription start site region 85706 | |
Tssr85707 | 9 | 7 | + | TSS region | transcription start site region 85707 | |
Tssr85708 | 9 | 45 | + | TSS region | transcription start site region 85708 | |
Milac3 | 9 | 0 | QTL | methamphetamine induced locomotor activation 3 | ||
Ankdd1a | 9 | 31723 | - | protein coding gene | ankyrin repeat and death domain containing 1A | |
Tssr90185 | 9 | 4 | - | TSS region | transcription start site region 90185 | |
Tssr90186 | 9 | 13 | - | TSS region | transcription start site region 90186 | |
Cpgi21950 | 9 | 244 | CpG island | CpG island 21950 | ||
Gm17749 | 9 | 8700 | - | unclassified non-coding RNA gene | predicted gene, 17749 | |
Tssr90187 | 9 | 47 | - | TSS region | transcription start site region 90187 | |
Tssr90188 | 9 | 14 | - | TSS region | transcription start site region 90188 | |
Tssr85709 | 9 | 25 | + | TSS region | transcription start site region 85709 | |
Tssr2917 | 9 | 18 | + | TSS region | transcription start site region 2917 | |
Tssr90189 | 9 | 21 | - | TSS region | transcription start site region 90189 | |
Tssr85710 | 9 | 26 | + | TSS region | transcription start site region 85710 | |
Tssr85711 | 9 | 39 | + | TSS region | transcription start site region 85711 | |
Tssr85712 | 9 | 16 | + | TSS region | transcription start site region 85712 | |
Tssr90190 | 9 | 25 | - | TSS region | transcription start site region 90190 | |
Tssr90191 | 9 | 18 | - | TSS region | transcription start site region 90191 | |
Tssr90192 | 9 | 12 | - | TSS region | transcription start site region 90192 | |
Tssr90193 | 9 | 11 | - | TSS region | transcription start site region 90193 | |
Tssr90194 | 9 | 11 | - | TSS region | transcription start site region 90194 | |
Plekho2 | 9 | 27342 | - | protein coding gene | pleckstrin homology domain containing, family O member 2 | |
Tssr90195 | 9 | 51 | - | TSS region | transcription start site region 90195 | |
Tssr90196 | 9 | 21 | - | TSS region | transcription start site region 90196 | |
Tssr90197 | 9 | 18 | - | TSS region | transcription start site region 90197 | |
Tssr90198 | 9 | 11 | - | TSS region | transcription start site region 90198 | |
Tssr90199 | 9 | 19 | - | TSS region | transcription start site region 90199 | |
Tssr90200 | 9 | 16 | - | TSS region | transcription start site region 90200 | |
Tssr90201 | 9 | 14 | - | TSS region | transcription start site region 90201 | |
Tssr90202 | 9 | 27 | - | TSS region | transcription start site region 90202 | |
Tssr90203 | 9 | 34 | - | TSS region | transcription start site region 90203 | |
Tssr90204 | 9 | 22 | - | TSS region | transcription start site region 90204 | |
Tssr90205 | 9 | 14 | - | TSS region | transcription start site region 90205 | |
Tssr90206 | 9 | 16 | - | TSS region | transcription start site region 90206 | |
Tssr90207 | 9 | 9 | - | TSS region | transcription start site region 90207 | |
Tssr90208 | 9 | 31 | - | TSS region | transcription start site region 90208 | |
Tssr90209 | 9 | 32 | - | TSS region | transcription start site region 90209 | |
Tssr90210 | 9 | 47 | - | TSS region | transcription start site region 90210 | |
Tssr90211 | 9 | 16 | - | TSS region | transcription start site region 90211 | |
D9Dcr2 | 9 | 115 | DNA segment | DNA segment, Chr 9, Derry C. Roopenian 2 | ||
D9Mit336 | 9 | 121 | DNA segment | DNA Segment, Chr 9 Massachusetts Institute of Technology 336 | ||
Tssr85713 | 9 | 11 | + | TSS region | transcription start site region 85713 | |
Cpgi21951 | 9 | 938 | CpG island | CpG island 21951 | ||
Tssr90212 | 9 | 18 | - | TSS region | transcription start site region 90212 | |
Tssr90213 | 9 | 5 | - | TSS region | transcription start site region 90213 | |
Cpgi21952 | 9 | 266 | CpG island | CpG island 21952 | ||
Cpgi21953 | 9 | 207 | CpG island | CpG island 21953 | ||
Tssr85714 | 9 | 36 | + | TSS region | transcription start site region 85714 | |
Pif1 | 9 | 8807 | + | protein coding gene | PIF1 5'-to-3' DNA helicase | |
Tssr85715 | 9 | 34 | + | TSS region | transcription start site region 85715 | |
Cpgi21954 | 9 | 889 | CpG island | CpG island 21954 | ||
Gm10144 | 9 | 1067 | - | pseudogene | predicted pseudogene 10144 | |
Cpgi21955 | 9 | 2467 | CpG island | CpG island 21955 | ||
Tssr90214 | 9 | 44 | - | TSS region | transcription start site region 90214 | |
Tssr85716 | 9 | 73 | + | TSS region | transcription start site region 85716 | |
Rbpms2 | 9 | 30880 | + | protein coding gene | RNA binding protein with multiple splicing 2 | |
Tssr90215 | 9 | 4 | - | TSS region | transcription start site region 90215 | |
Tssr85717 | 9 | 47 | + | TSS region | transcription start site region 85717 | |
Tssr85718 | 9 | 13 | + | TSS region | transcription start site region 85718 | |
Tssr85719 | 9 | 16 | + | TSS region | transcription start site region 85719 | |
Tssr85720 | 9 | 7 | + | TSS region | transcription start site region 85720 | |
Tssr85721 | 9 | 7 | + | TSS region | transcription start site region 85721 | |
Tssr85722 | 9 | 10 | + | TSS region | transcription start site region 85722 | |
Tssr85723 | 9 | 18 | + | TSS region | transcription start site region 85723 | |
Tssr85724 | 9 | 13 | + | TSS region | transcription start site region 85724 | |
Tssr85725 | 9 | 22 | + | TSS region | transcription start site region 85725 | |
Cpgi21956 | 9 | 450 | CpG island | CpG island 21956 | ||
Tssr85726 | 9 | 39 | + | TSS region | transcription start site region 85726 | |
Oaz2 | 9 | 13752 | + | protein coding gene | ornithine decarboxylase antizyme 2 | |
Tssr85727 | 9 | 55 | + | TSS region | transcription start site region 85727 | |
Tssr90216 | 9 | 4 | - | TSS region | transcription start site region 90216 | |
Zfp609 | 9 | 135173 | - | protein coding gene | zinc finger protein 609 | |
Tssr2918 | 9 | 8 | + | TSS region | transcription start site region 2918 | |
Gm30089 | 9 | 373 | - | pseudogene | predicted gene, 30089 | |
Tssr90217 | 9 | 3 | - | TSS region | transcription start site region 90217 | |
Tssr90218 | 9 | 3 | - | TSS region | transcription start site region 90218 | |
Cpgi21957 | 9 | 1243 | CpG island | CpG island 21957 | ||
Tssr90219 | 9 | 32 | - | TSS region | transcription start site region 90219 | |
Tssr90220 | 9 | 29 | - | TSS region | transcription start site region 90220 | |
Tssr90221 | 9 | 33 | - | TSS region | transcription start site region 90221 | |
Trip4 | 9 | 79864 | - | protein coding gene | thyroid hormone receptor interactor 4 | |
Gm30314 | 9 | 9082 | + | lncRNA gene | predicted gene, 30314 | |
n-R5s85 | 9 | 112 | + | rRNA gene | nuclear encoded rRNA 5S 85 | |
Gm16073 | 9 | 516 | + | pseudogene | predicted gene 16073 | |
Cpgi21958 | 9 | 429 | CpG island | CpG island 21958 | ||
Tssr90222 | 9 | 45 | - | TSS region | transcription start site region 90222 | |
Tssr90223 | 9 | 15 | - | TSS region | transcription start site region 90223 | |
Tssr90224 | 9 | 11 | - | TSS region | transcription start site region 90224 | |
Cpgi21959 | 9 | 181 | CpG island | CpG island 21959 | ||
Pclaf | 9 | 13029 | + | protein coding gene | PCNA clamp associated factor | |
Tssr85728 | 9 | 52 | + | TSS region | transcription start site region 85728 | |
Tssr85729 | 9 | 14 | + | TSS region | transcription start site region 85729 | |
Tssr85730 | 9 | 14 | + | TSS region | transcription start site region 85730 | |
D030028M11Rik | 9 | 2341 | unclassified gene | RIKEN cDNA D030028M11 gene | ||
Tssr85731 | 9 | 35 | + | TSS region | transcription start site region 85731 | |
Gm23248 | 9 | 107 | + | snRNA gene | predicted gene, 23248 | |
Tssr85732 | 9 | 5 | + | TSS region | transcription start site region 85732 | |
Cpgi21960 | 9 | 1048 | CpG island | CpG island 21960 | ||
Tssr90225 | 9 | 19 | - | TSS region | transcription start site region 90225 | |
Tssr90226 | 9 | 33 | - | TSS region | transcription start site region 90226 | |
Csnk1g1 | 9 | 136053 | + | protein coding gene | casein kinase 1, gamma 1 | |
Tssr85733 | 9 | 52 | + | TSS region | transcription start site region 85733 | |
Tssr85734 | 9 | 60 | + | TSS region | transcription start site region 85734 | |
Tssr85735 | 9 | 11 | + | TSS region | transcription start site region 85735 | |
Tssr85736 | 9 | 1 | + | TSS region | transcription start site region 85736 | |
D9Mit104 | 9 | 121 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 104 | ||
Cd4ts4 | 9 | 121 | QTL | CD4 T cell subset 4 | ||
Smgd1 | 9 | 20772140 | QTL | submucosal gland distribution 1 | ||
Pgia5 | 9 | 121 | QTL | proteoglycan induced arthritis 5 | ||
Tssr85737 | 9 | 20 | + | TSS region | transcription start site region 85737 |