Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:65090341-65340387

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47350 9 65054882 to 65094355 39473 - antisense lncRNA gene predicted gene, 47350
Cpgi21935 9 65100787 to 65102357 1570 CpG island CpG island 21935
Tssr85663 9 65101304 to 65101342 38 + TSS region transcription start site region 85663
Tssr85664 9 65101453 to 65101528 75 + TSS region transcription start site region 85664
Igdcc4 9 65101486 to 65137940 36454 + protein coding gene immunoglobulin superfamily, DCC subclass, member 4
Cpgi21936 9 65102757 to 65102973 216 CpG island CpG island 21936
Cpgi21937 9 65122635 to 65122888 253 CpG island CpG island 21937
Cpgi21938 9 65123426 to 65124297 871 CpG island CpG island 21938
Cpgi21939 9 65128231 to 65128960 729 CpG island CpG island 21939
D9Mit316 9 65133909 to 65134043 134 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-316
Psl6 9 65133909 to 95640755 30506846 QTL promotion susceptibility QTL 6
Tssr85665 9 65136998 to 65137011 13 + TSS region transcription start site region 85665
Cpgi21940 9 65140785 to 65142288 1503 CpG island CpG island 21940
Tssr2914 9 65141155 to 65141158 3 + TSS region transcription start site region 2914
Tssr85666 9 65141175 to 65141198 23 + TSS region transcription start site region 85666
Igdcc3 9 65141189 to 65185872 44683 + protein coding gene immunoglobulin superfamily, DCC subclass, member 3
Tssr85667 9 65141429 to 65141444 15 + TSS region transcription start site region 85667
Cpgi21941 9 65162443 to 65163533 1090 CpG island CpG island 21941
Tssr90171 9 65175272 to 65175278 6 - TSS region transcription start site region 90171
Tssr90172 9 65175745 to 65175747 2 - TSS region transcription start site region 90172
Tssr85668 9 65185752 to 65185767 15 + TSS region transcription start site region 85668
Tssr85669 9 65188863 to 65188864 1 + TSS region transcription start site region 85669
Gm40527 9 65193232 to 65212264 19032 + lncRNA gene predicted gene, 40527
Tssr85670 9 65195374 to 65195381 7 + TSS region transcription start site region 85670
Tssr85671 9 65195389 to 65195392 3 + TSS region transcription start site region 85671
Gm25313 9 65196572 to 65196687 115 - snRNA gene predicted gene, 25313
Rnu5g 9 65201726 to 65201841 115 - snRNA gene RNA, U5G small nuclear
Tssr85672 9 65208547 to 65208557 10 + TSS region transcription start site region 85672
Parp16 9 65214379 to 65239220 24841 + protein coding gene poly (ADP-ribose) polymerase family, member 16
Tssr85673 9 65214663 to 65214701 38 + TSS region transcription start site region 85673
Cpgi21942 9 65214823 to 65215849 1026 CpG island CpG island 21942
Tssr85674 9 65215099 to 65215176 77 + TSS region transcription start site region 85674
Tssr85675 9 65215341 to 65215387 46 + TSS region transcription start site region 85675
Gm36538 9 65233847 to 65265616 31769 - lncRNA gene predicted gene, 36538
Tssr85676 9 65235879 to 65235884 5 + TSS region transcription start site region 85676
Tssr2915 9 65262809 to 65262811 2 + TSS region transcription start site region 2915
Tssr85677 9 65265173 to 65265187 14 + TSS region transcription start site region 85677
Cilp 9 65265180 to 65280605 15425 + protein coding gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase
Tssr85678 9 65265673 to 65265693 20 + TSS region transcription start site region 85678
Cpgi21943 9 65293995 to 65295058 1063 CpG island CpG island 21943
Tssr85679 9 65294157 to 65294169 12 + TSS region transcription start site region 85679
Tssr85680 9 65294179 to 65294204 25 + TSS region transcription start site region 85680
Clpx 9 65294260 to 65330658 36398 + protein coding gene caseinolytic mitochondrial matrix peptidase chaperone subunit
Tssr85681 9 65294275 to 65294341 66 + TSS region transcription start site region 85681
Tssr85682 9 65294370 to 65294375 5 + TSS region transcription start site region 85682
Tssr85683 9 65294395 to 65294417 22 + TSS region transcription start site region 85683
Tssr85684 9 65294427 to 65294437 10 + TSS region transcription start site region 85684
Tssr85685 9 65294440 to 65294444 4 + TSS region transcription start site region 85685
Tssr85686 9 65294557 to 65294576 19 + TSS region transcription start site region 85686
Gm16218 9 65297532 to 65297919 387 - pseudogene predicted gene 16218
D9Ertd338e 9 65303062 to 65303271 209 DNA segment DNA segment, Chr 9, ERATO Doi 338, expressed
Tssr85687 9 65312814 to 65312835 21 + TSS region transcription start site region 85687
Gm39363 9 65332520 to 65345607 13087 + lincRNA gene predicted gene, 39363
Tssr85688 9 65332554 to 65332570 16 + TSS region transcription start site region 85688
Tssr85689 9 65332572 to 65332579 7 + TSS region transcription start site region 85689
Gm19219 9 65336174 to 65336897 723 - pseudogene predicted gene, 19219