Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:64939663-65489701

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc24a1 9 64922861 to 64951607 28746 - protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
Tssr85646 9 64947704 to 64947711 7 + TSS region transcription start site region 85646
Tssr90164 9 64949276 to 64949297 21 - TSS region transcription start site region 90164
Tssr90165 9 64951547 to 64951557 10 - TSS region transcription start site region 90165
Tssr90166 9 64951599 to 64951635 36 - TSS region transcription start site region 90166
Tssr85647 9 64960195 to 64960205 10 + TSS region transcription start site region 85647
Cpgi21932 9 64960688 to 64961220 532 CpG island CpG island 21932
Tssr85648 9 64960814 to 64960843 29 + TSS region transcription start site region 85648
Tssr85649 9 64960846 to 64960891 45 + TSS region transcription start site region 85649
Tssr85650 9 64960892 to 64960921 29 + TSS region transcription start site region 85650
Ints14 9 64960905 to 64986978 26073 + protein coding gene integrator complex subunit 14
Gm25640 9 64971669 to 64971793 124 - miRNA gene predicted gene, 25640
Hacd3 9 64986983 to 65021693 34710 - protein coding gene 3-hydroxyacyl-CoA dehydratase 3
Tssr90167 9 65008466 to 65008473 7 - TSS region transcription start site region 90167
Tssr90168 9 65010745 to 65010793 48 - TSS region transcription start site region 90168
Tssr85651 9 65018817 to 65018827 10 + TSS region transcription start site region 85651
Cpgi21933 9 65020942 to 65022046 1104 CpG island CpG island 21933
Tssr85652 9 65021188 to 65021203 15 + TSS region transcription start site region 85652
Tssr90169 9 65021645 to 65021717 72 - TSS region transcription start site region 90169
Tssr85653 9 65021785 to 65021814 29 + TSS region transcription start site region 85653
Gm39362 9 65024901 to 65032355 7454 - lncRNA gene predicted gene, 39362
Cpgi21934 9 65032132 to 65033190 1058 CpG island CpG island 21934
Tssr85654 9 65032413 to 65032466 53 + TSS region transcription start site region 85654
Dpp8 9 65032414 to 65082651 50237 + protein coding gene dipeptidylpeptidase 8
Tssr85655 9 65032470 to 65032491 21 + TSS region transcription start site region 85655
Tssr85656 9 65032617 to 65032672 55 + TSS region transcription start site region 85656
Tssr85657 9 65032733 to 65032759 26 + TSS region transcription start site region 85657
Tssr85658 9 65032766 to 65032790 24 + TSS region transcription start site region 85658
Tssr90170 9 65037042 to 65037076 34 - TSS region transcription start site region 90170
Gm47350 9 65054882 to 65094355 39473 - antisense lncRNA gene predicted gene, 47350
A430110M15Rik 9 65069651 to 65071393 1742 unclassified gene RIKEN cDNA A430110M15 gene
Tssr85659 9 65077882 to 65077887 5 + TSS region transcription start site region 85659
Tssr85660 9 65077923 to 65077940 17 + TSS region transcription start site region 85660
Tssr85661 9 65077977 to 65077988 11 + TSS region transcription start site region 85661
Tssr85662 9 65082482 to 65082514 32 + TSS region transcription start site region 85662
Cpgi21935 9 65100787 to 65102357 1570 CpG island CpG island 21935
Tssr85663 9 65101304 to 65101342 38 + TSS region transcription start site region 85663
Tssr85664 9 65101453 to 65101528 75 + TSS region transcription start site region 85664
Igdcc4 9 65101486 to 65137940 36454 + protein coding gene immunoglobulin superfamily, DCC subclass, member 4
Cpgi21936 9 65102757 to 65102973 216 CpG island CpG island 21936
Cpgi21937 9 65122635 to 65122888 253 CpG island CpG island 21937
Cpgi21938 9 65123426 to 65124297 871 CpG island CpG island 21938
Cpgi21939 9 65128231 to 65128960 729 CpG island CpG island 21939
D9Mit316 9 65133909 to 65134043 134 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-316
Psl6 9 65133909 to 95640755 30506846 QTL promotion susceptibility QTL 6
Tssr85665 9 65136998 to 65137011 13 + TSS region transcription start site region 85665
Cpgi21940 9 65140785 to 65142288 1503 CpG island CpG island 21940
Tssr2914 9 65141155 to 65141158 3 + TSS region transcription start site region 2914
Tssr85666 9 65141175 to 65141198 23 + TSS region transcription start site region 85666
Igdcc3 9 65141189 to 65185872 44683 + protein coding gene immunoglobulin superfamily, DCC subclass, member 3
Tssr85667 9 65141429 to 65141444 15 + TSS region transcription start site region 85667
Cpgi21941 9 65162443 to 65163533 1090 CpG island CpG island 21941
Tssr90171 9 65175272 to 65175278 6 - TSS region transcription start site region 90171
Tssr90172 9 65175745 to 65175747 2 - TSS region transcription start site region 90172
Tssr85668 9 65185752 to 65185767 15 + TSS region transcription start site region 85668
Tssr85669 9 65188863 to 65188864 1 + TSS region transcription start site region 85669
Gm40527 9 65193232 to 65212264 19032 + lncRNA gene predicted gene, 40527
Tssr85670 9 65195374 to 65195381 7 + TSS region transcription start site region 85670
Tssr85671 9 65195389 to 65195392 3 + TSS region transcription start site region 85671
Gm25313 9 65196572 to 65196687 115 - snRNA gene predicted gene, 25313
Rnu5g 9 65201726 to 65201841 115 - snRNA gene RNA, U5G small nuclear
Tssr85672 9 65208547 to 65208557 10 + TSS region transcription start site region 85672
Parp16 9 65214379 to 65239220 24841 + protein coding gene poly (ADP-ribose) polymerase family, member 16
Tssr85673 9 65214663 to 65214701 38 + TSS region transcription start site region 85673
Cpgi21942 9 65214823 to 65215849 1026 CpG island CpG island 21942
Tssr85674 9 65215099 to 65215176 77 + TSS region transcription start site region 85674
Tssr85675 9 65215341 to 65215387 46 + TSS region transcription start site region 85675
Gm36538 9 65233847 to 65265616 31769 - lncRNA gene predicted gene, 36538
Tssr85676 9 65235879 to 65235884 5 + TSS region transcription start site region 85676
Tssr2915 9 65262809 to 65262811 2 + TSS region transcription start site region 2915
Tssr85677 9 65265173 to 65265187 14 + TSS region transcription start site region 85677
Cilp 9 65265180 to 65280605 15425 + protein coding gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase
Tssr85678 9 65265673 to 65265693 20 + TSS region transcription start site region 85678
Cpgi21943 9 65293995 to 65295058 1063 CpG island CpG island 21943
Tssr85679 9 65294157 to 65294169 12 + TSS region transcription start site region 85679
Tssr85680 9 65294179 to 65294204 25 + TSS region transcription start site region 85680
Clpx 9 65294260 to 65330658 36398 + protein coding gene caseinolytic mitochondrial matrix peptidase chaperone subunit
Tssr85681 9 65294275 to 65294341 66 + TSS region transcription start site region 85681
Tssr85682 9 65294370 to 65294375 5 + TSS region transcription start site region 85682
Tssr85683 9 65294395 to 65294417 22 + TSS region transcription start site region 85683
Tssr85684 9 65294427 to 65294437 10 + TSS region transcription start site region 85684
Tssr85685 9 65294440 to 65294444 4 + TSS region transcription start site region 85685
Tssr85686 9 65294557 to 65294576 19 + TSS region transcription start site region 85686
Gm16218 9 65297532 to 65297919 387 - pseudogene predicted gene 16218
D9Ertd338e 9 65303062 to 65303271 209 DNA segment DNA segment, Chr 9, ERATO Doi 338, expressed
Tssr85687 9 65312814 to 65312835 21 + TSS region transcription start site region 85687
Gm39363 9 65332520 to 65345607 13087 + lincRNA gene predicted gene, 39363
Tssr85688 9 65332554 to 65332570 16 + TSS region transcription start site region 85688
Tssr85689 9 65332572 to 65332579 7 + TSS region transcription start site region 85689
Gm19219 9 65336174 to 65336897 723 - pseudogene predicted gene, 19219
Gm47192 9 65341988 to 65342174 186 - pseudogene predicted gene, 47192
Cpgi21944 9 65345874 to 65347181 1307 CpG island CpG island 21944
Tssr85690 9 65346066 to 65346077 11 + TSS region transcription start site region 85690
Tssr85691 9 65346091 to 65346129 38 + TSS region transcription start site region 85691
Pdcd7 9 65346104 to 65359643 13539 + protein coding gene programmed cell death 7
Tssr85692 9 65361023 to 65361047 24 + TSS region transcription start site region 85692
Ubap1l 9 65361041 to 65380377 19336 + protein coding gene ubiquitin-associated protein 1-like
Tssr85693 9 65361049 to 65361056 7 + TSS region transcription start site region 85693
Gm17875 9 65364889 to 65365495 606 + pseudogene predicted gene, 17875
Tssr85694 9 65371673 to 65371686 13 + TSS region transcription start site region 85694
Tssr85695 9 65371695 to 65371708 13 + TSS region transcription start site region 85695
Cpgi21945 9 65371774 to 65372186 412 CpG island CpG island 21945
Kbtbd13 9 65388684 to 65391652 2968 - protein coding gene kelch repeat and BTB (POZ) domain containing 13
Cpgi21946 9 65390419 to 65391919 1500 CpG island CpG island 21946
Cpgi21947 9 65398245 to 65398754 509 CpG island CpG island 21947
Tssr90173 9 65398395 to 65398400 5 - TSS region transcription start site region 90173
Rasl12 9 65398506 to 65414853 16347 + protein coding gene RAS-like, family 12
Tssr85696 9 65398507 to 65398580 73 + TSS region transcription start site region 85696
Tssr85697 9 65400868 to 65400879 11 + TSS region transcription start site region 85697
Tssr85698 9 65400897 to 65400912 15 + TSS region transcription start site region 85698
Slc51b 9 65412753 to 65422773 10020 - protein coding gene solute carrier family 51, beta subunit
Tssr85699 9 65412771 to 65412796 25 + TSS region transcription start site region 85699
Tssr85700 9 65412917 to 65412934 17 + TSS region transcription start site region 85700
D9Mit360 9 65415984 to 65416114 130 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-360
Tssr90174 9 65422776 to 65422777 1 - TSS region transcription start site region 90174
Tssr90175 9 65422780 to 65422791 11 - TSS region transcription start site region 90175
Tssr90176 9 65422834 to 65422848 14 - TSS region transcription start site region 90176
Tssr90177 9 65422858 to 65422873 15 - TSS region transcription start site region 90177
Tssr90178 9 65422895 to 65422910 15 - TSS region transcription start site region 90178
Tssr90179 9 65422949 to 65422961 12 - TSS region transcription start site region 90179
Tssr90180 9 65422983 to 65422994 11 - TSS region transcription start site region 90180
Tssr90181 9 65423011 to 65423022 11 - TSS region transcription start site region 90181
Tssr90182 9 65423028 to 65423042 14 - TSS region transcription start site region 90182
Tssr90183 9 65423092 to 65423105 13 - TSS region transcription start site region 90183
Tssr90184 9 65423244 to 65423256 12 - TSS region transcription start site region 90184
Cpgi21948 9 65435594 to 65436258 664 CpG island CpG island 21948
Tssr85701 9 65435766 to 65435793 27 + TSS region transcription start site region 85701
Mtfmt 9 65435782 to 65453054 17272 + protein coding gene mitochondrial methionyl-tRNA formyltransferase
Tssr85702 9 65435797 to 65435845 48 + TSS region transcription start site region 85702
D9Mit362 9 65445717 to 65445824 107 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-362
Gm47270 9 65453615 to 65460399 6784 + lincRNA gene predicted gene, 47270
Cpgi21949 9 65460683 to 65461454 771 CpG island CpG island 21949
Tssr2916 9 65460912 to 65460917 5 + TSS region transcription start site region 2916
Tssr85703 9 65460926 to 65460983 57 + TSS region transcription start site region 85703
Spg21 9 65460947 to 65488470 27523 + protein coding gene SPG21, maspardin
Tssr85704 9 65460984 to 65460993 9 + TSS region transcription start site region 85704
Tssr85705 9 65461321 to 65461351 30 + TSS region transcription start site region 85705
Tssr85706 9 65462538 to 65462542 4 + TSS region transcription start site region 85706
Tssr85707 9 65462665 to 65462672 7 + TSS region transcription start site region 85707
Tssr85708 9 65462795 to 65462840 45 + TSS region transcription start site region 85708
Milac3 9 65465164 to 65465164 0 QTL methamphetamine induced locomotor activation 3
Ankdd1a 9 65488470 to 65520193 31723 - protein coding gene ankyrin repeat and death domain containing 1A