Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:64816547-65086557

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dennd4a 9 64811340 to 64919667 108327 + protein coding gene DENN/MADD domain containing 4A
Tssr85642 9 64817941 to 64817958 17 + TSS region transcription start site region 85642
Tssr85643 9 64822066 to 64822070 4 + TSS region transcription start site region 85643
Tssr2912 9 64830120 to 64830130 10 - TSS region transcription start site region 2912
Tssr2913 9 64830324 to 64830329 5 + TSS region transcription start site region 2913
Tssr90162 9 64841796 to 64841799 3 - TSS region transcription start site region 90162
Tssr85644 9 64848024 to 64848029 5 + TSS region transcription start site region 85644
Gm24347 9 64881784 to 64881925 141 - snoRNA gene predicted gene, 24347
Tssr90163 9 64918644 to 64918684 40 - TSS region transcription start site region 90163
Tssr85645 9 64918719 to 64918749 30 + TSS region transcription start site region 85645
Slc24a1 9 64922861 to 64951607 28746 - protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
Gm39361 9 64933029 to 64938257 5228 + lncRNA gene predicted gene, 39361
Tssr85646 9 64947704 to 64947711 7 + TSS region transcription start site region 85646
Tssr90164 9 64949276 to 64949297 21 - TSS region transcription start site region 90164
Tssr90165 9 64951547 to 64951557 10 - TSS region transcription start site region 90165
Tssr90166 9 64951599 to 64951635 36 - TSS region transcription start site region 90166
Tssr85647 9 64960195 to 64960205 10 + TSS region transcription start site region 85647
Cpgi21932 9 64960688 to 64961220 532 CpG island CpG island 21932
Tssr85648 9 64960814 to 64960843 29 + TSS region transcription start site region 85648
Tssr85649 9 64960846 to 64960891 45 + TSS region transcription start site region 85649
Tssr85650 9 64960892 to 64960921 29 + TSS region transcription start site region 85650
Ints14 9 64960905 to 64986978 26073 + protein coding gene integrator complex subunit 14
Gm25640 9 64971669 to 64971793 124 - miRNA gene predicted gene, 25640
Hacd3 9 64986983 to 65021693 34710 - protein coding gene 3-hydroxyacyl-CoA dehydratase 3
Tssr90167 9 65008466 to 65008473 7 - TSS region transcription start site region 90167
Tssr90168 9 65010745 to 65010793 48 - TSS region transcription start site region 90168
Tssr85651 9 65018817 to 65018827 10 + TSS region transcription start site region 85651
Cpgi21933 9 65020942 to 65022046 1104 CpG island CpG island 21933
Tssr85652 9 65021188 to 65021203 15 + TSS region transcription start site region 85652
Tssr90169 9 65021645 to 65021717 72 - TSS region transcription start site region 90169
Tssr85653 9 65021785 to 65021814 29 + TSS region transcription start site region 85653
Gm39362 9 65024901 to 65032355 7454 - lncRNA gene predicted gene, 39362
Cpgi21934 9 65032132 to 65033190 1058 CpG island CpG island 21934
Tssr85654 9 65032413 to 65032466 53 + TSS region transcription start site region 85654
Dpp8 9 65032414 to 65082651 50237 + protein coding gene dipeptidylpeptidase 8
Tssr85655 9 65032470 to 65032491 21 + TSS region transcription start site region 85655
Tssr85656 9 65032617 to 65032672 55 + TSS region transcription start site region 85656
Tssr85657 9 65032733 to 65032759 26 + TSS region transcription start site region 85657
Tssr85658 9 65032766 to 65032790 24 + TSS region transcription start site region 85658
Tssr90170 9 65037042 to 65037076 34 - TSS region transcription start site region 90170
Gm47350 9 65054882 to 65094355 39473 - antisense lncRNA gene predicted gene, 47350
A430110M15Rik 9 65069651 to 65071393 1742 unclassified gene RIKEN cDNA A430110M15 gene
Tssr85659 9 65077882 to 65077887 5 + TSS region transcription start site region 85659
Tssr85660 9 65077923 to 65077940 17 + TSS region transcription start site region 85660
Tssr85661 9 65077977 to 65077988 11 + TSS region transcription start site region 85661
Tssr85662 9 65082482 to 65082514 32 + TSS region transcription start site region 85662