Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:63731774-64151787

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smad3 9 63646767 to 63757994 111227 - protein coding gene SMAD family member 3
Tssr85585 9 63737807 to 63737827 20 + TSS region transcription start site region 85585
Tssr90109 9 63738364 to 63738367 3 - TSS region transcription start site region 90109
Tssr90110 9 63739035 to 63739076 41 - TSS region transcription start site region 90110
Tssr90111 9 63745509 to 63745512 3 - TSS region transcription start site region 90111
Cpgi21917 9 63756865 to 63758638 1773 CpG island CpG island 21917
Tssr90112 9 63757884 to 63757898 14 - TSS region transcription start site region 90112
Tssr90113 9 63757933 to 63757964 31 - TSS region transcription start site region 90113
Tssr90114 9 63758171 to 63758190 19 - TSS region transcription start site region 90114
Gm35941 9 63772754 to 63780698 7944 - lncRNA gene predicted gene, 35941
D9Mit31 9 63784313 to 63784439 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 31
D9Mit245 9 63784897 to 63785091 194 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 245
Gm39359 9 63794105 to 63795804 1699 - lncRNA gene predicted gene, 39359
Gm2553 9 63801193 to 63801797 604 - pseudogene predicted gene 2553
Tssr90115 9 63838064 to 63838067 3 - TSS region transcription start site region 90115
Tssr85586 9 63876192 to 63876202 10 + TSS region transcription start site region 85586
D9Mit175 9 63886294 to 63886425 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 175
Gm18541 9 63898265 to 63898802 537 + pseudogene predicted gene, 18541
Cpgi21918 9 63927651 to 63927856 205 CpG island CpG island 21918
Gm36033 9 63935908 to 63944101 8193 - lincRNA gene predicted gene, 36033
Tssr90116 9 63941774 to 63941787 13 - TSS region transcription start site region 90116
Smad6 9 63953076 to 64022059 68983 - protein coding gene SMAD family member 6
Cpgi21919 9 63953490 to 63954109 619 CpG island CpG island 21919
D9Mit144.2 9 63987620 to 63987733 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 144.2
D9Mit144 9 63987689 to 63987834 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 144
Tssr90117 9 64002565 to 64002569 4 - TSS region transcription start site region 90117
Tssr90118 9 64015033 to 64015035 2 - TSS region transcription start site region 90118
Tssr90119 9 64017031 to 64017049 18 - TSS region transcription start site region 90119
Cpgi21920 9 64019959 to 64023376 3417 CpG island CpG island 21920
Tssr90120 9 64021703 to 64021723 20 - TSS region transcription start site region 90120
Tssr90121 9 64021898 to 64021906 8 - TSS region transcription start site region 90121
Tssr90122 9 64021922 to 64021942 20 - TSS region transcription start site region 90122
Tssr90123 9 64021944 to 64021960 16 - TSS region transcription start site region 90123
Tssr90124 9 64021995 to 64022008 13 - TSS region transcription start site region 90124
Tssr90125 9 64022027 to 64022042 15 - TSS region transcription start site region 90125
Tssr90126 9 64022043 to 64022066 23 - TSS region transcription start site region 90126
Tssr90127 9 64022083 to 64022101 18 - TSS region transcription start site region 90127
Tssr90128 9 64022111 to 64022129 18 - TSS region transcription start site region 90128
Tssr85587 9 64022234 to 64022271 37 + TSS region transcription start site region 85587
Tssr90129 9 64022984 to 64022998 14 - TSS region transcription start site region 90129
1700055C04Rik 9 64038465 to 64041465 3000 - lncRNA gene RIKEN cDNA 1700055C04 gene
Gm25606 9 64048496 to 64048590 94 + rRNA gene predicted gene, 25606
1110036E04Rik 9 64049829 to 64054100 4271 + lincRNA gene RIKEN cDNA 1110036E04 gene
Cpgi21921 9 64060171 to 64060676 505 CpG island CpG island 21921
Scarletltr 9 64080761 to 64086961 6200 + lncRNA gene Scarletltr, erythroid developmental long intergenic non-protein coding transcript
Cpgi21922 9 64084675 to 64085266 591 CpG island CpG island 21922
Tssr85588 9 64084907 to 64084918 11 + TSS region transcription start site region 85588
Tssr85589 9 64084919 to 64084936 17 + TSS region transcription start site region 85589
Gm39360 9 64088485 to 64100555 12070 - lncRNA gene predicted gene, 39360
Tssr85590 9 64092335 to 64092343 8 + TSS region transcription start site region 85590
Lctl 9 64117147 to 64138118 20971 + protein coding gene lactase-like
Tssr85591 9 64117155 to 64117191 36 + TSS region transcription start site region 85591
Tssr85592 9 64117225 to 64117242 17 + TSS region transcription start site region 85592
Tssr85593 9 64117254 to 64117267 13 + TSS region transcription start site region 85593
Tssr85594 9 64121501 to 64121504 3 + TSS region transcription start site region 85594
D9Mit209 9 64127276 to 64127401 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 209
Zwilch 9 64137144 to 64172931 35787 - protein coding gene zwilch kinetochore protein
Tssr85595 9 64139273 to 64139277 4 + TSS region transcription start site region 85595