Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:63243364-64233367

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Map2k5 9 63163768 to 63377902 214134 - protein coding gene mitogen-activated protein kinase kinase 5
Tssr90086 9 63281224 to 63281240 16 - TSS region transcription start site region 90086
Tssr90087 9 63281260 to 63281271 11 - TSS region transcription start site region 90087
Tssr85580 9 63281325 to 63281360 35 + TSS region transcription start site region 85580
Gm39355 9 63291534 to 63292775 1241 - lncRNA gene predicted gene, 39355
Tssr90088 9 63322789 to 63322814 25 - TSS region transcription start site region 90088
D9Mit105 9 63332429 to 63332570 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 105
Tssr2905 9 63333638 to 63333646 8 + TSS region transcription start site region 2905
Cpgi21914 9 63377267 to 63378139 872 CpG island CpG island 21914
Tssr90089 9 63377624 to 63377766 142 - TSS region transcription start site region 90089
Tssr90090 9 63377814 to 63377829 15 - TSS region transcription start site region 90090
Tssr90091 9 63377835 to 63377914 79 - TSS region transcription start site region 90091
Tssr90092 9 63377960 to 63377980 20 - TSS region transcription start site region 90092
Tssr90093 9 63384772 to 63384798 26 - TSS region transcription start site region 90093
2300009A05Rik 9 63394447 to 63399244 4797 - protein coding gene RIKEN cDNA 2300009A05 gene
Cpgi21915 9 63398628 to 63399688 1060 CpG island CpG island 21915
Tssr90094 9 63399031 to 63399062 31 - TSS region transcription start site region 90094
Tssr90095 9 63399064 to 63399140 76 - TSS region transcription start site region 90095
Tssr90096 9 63399216 to 63399262 46 - TSS region transcription start site region 90096
Tssr90097 9 63399264 to 63399302 38 - TSS region transcription start site region 90097
Gm16759 9 63399376 to 63480667 81291 + lncRNA gene predicted gene, 16759
Iqch 9 63421455 to 63602493 181038 - protein coding gene IQ motif containing H
Gm25995 9 63442319 to 63442460 141 + snRNA gene predicted gene, 25995
D9Bwg1371 9 63443118 to 63443421 303 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1371
Gm6257 9 63443166 to 63444075 909 - pseudogene predicted gene 6257
Gm35809 9 63480686 to 63534004 53318 + lncRNA gene predicted gene, 35809
D9Mit338 9 63487095 to 63487219 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 338
Tssr2906 9 63500725 to 63500729 4 + TSS region transcription start site region 2906
Gm39358 9 63565519 to 63571734 6215 + lncRNA gene predicted gene, 39358
Cpgi21916 9 63602051 to 63603129 1078 CpG island CpG island 21916
Tssr90098 9 63602449 to 63602460 11 - TSS region transcription start site region 90098
Tssr90099 9 63602464 to 63602494 30 - TSS region transcription start site region 90099
Tssr90100 9 63602496 to 63602505 9 - TSS region transcription start site region 90100
Aagab 9 63602628 to 63641897 39269 + protein coding gene alpha- and gamma-adaptin binding protein
Tssr85581 9 63602650 to 63602703 53 + TSS region transcription start site region 85581
D9Dcr1 9 63603875 to 63603970 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 1
D9Mit106 9 63603876 to 63603974 98 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 106
avc3 9 63603876 to 68829021 5225145 heritable phenotypic marker atrioventricular canal 3
Smad3 9 63646767 to 63757994 111227 - protein coding gene SMAD family member 3
Tssr90101 9 63666789 to 63666796 7 - TSS region transcription start site region 90101
Tssr90102 9 63666802 to 63666813 11 - TSS region transcription start site region 90102
Tssr90103 9 63666823 to 63666845 22 - TSS region transcription start site region 90103
Tssr90104 9 63667550 to 63667568 18 - TSS region transcription start site region 90104
Tssr85582 9 63690768 to 63690816 48 + TSS region transcription start site region 85582
Tssr90105 9 63706416 to 63706430 14 - TSS region transcription start site region 90105
Tssr90106 9 63711983 to 63711994 11 - TSS region transcription start site region 90106
Tssr90107 9 63714743 to 63714769 26 - TSS region transcription start site region 90107
Tssr90108 9 63719041 to 63719046 5 - TSS region transcription start site region 90108
Tssr85583 9 63719256 to 63719292 36 + TSS region transcription start site region 85583
Tssr85584 9 63731620 to 63731639 19 + TSS region transcription start site region 85584
Tssr85585 9 63737807 to 63737827 20 + TSS region transcription start site region 85585
Tssr90109 9 63738364 to 63738367 3 - TSS region transcription start site region 90109
Tssr90110 9 63739035 to 63739076 41 - TSS region transcription start site region 90110
Tssr90111 9 63745509 to 63745512 3 - TSS region transcription start site region 90111
Cpgi21917 9 63756865 to 63758638 1773 CpG island CpG island 21917
Tssr90112 9 63757884 to 63757898 14 - TSS region transcription start site region 90112
Tssr90113 9 63757933 to 63757964 31 - TSS region transcription start site region 90113
Tssr90114 9 63758171 to 63758190 19 - TSS region transcription start site region 90114
Gm35941 9 63772754 to 63780698 7944 - lncRNA gene predicted gene, 35941
D9Mit31 9 63784313 to 63784439 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 31
D9Mit245 9 63784897 to 63785091 194 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 245
Gm39359 9 63794105 to 63795804 1699 - lncRNA gene predicted gene, 39359
Gm2553 9 63801193 to 63801797 604 - pseudogene predicted gene 2553
Tssr90115 9 63838064 to 63838067 3 - TSS region transcription start site region 90115
Tssr85586 9 63876192 to 63876202 10 + TSS region transcription start site region 85586
D9Mit175 9 63886294 to 63886425 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 175
Gm18541 9 63898265 to 63898802 537 + pseudogene predicted gene, 18541
Cpgi21918 9 63927651 to 63927856 205 CpG island CpG island 21918
Gm36033 9 63935908 to 63944101 8193 - lincRNA gene predicted gene, 36033
Tssr90116 9 63941774 to 63941787 13 - TSS region transcription start site region 90116
Smad6 9 63953076 to 64022059 68983 - protein coding gene SMAD family member 6
Cpgi21919 9 63953490 to 63954109 619 CpG island CpG island 21919
D9Mit144.2 9 63987620 to 63987733 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 144.2
D9Mit144 9 63987689 to 63987834 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 144
Tssr90117 9 64002565 to 64002569 4 - TSS region transcription start site region 90117
Tssr90118 9 64015033 to 64015035 2 - TSS region transcription start site region 90118
Tssr90119 9 64017031 to 64017049 18 - TSS region transcription start site region 90119
Cpgi21920 9 64019959 to 64023376 3417 CpG island CpG island 21920
Tssr90120 9 64021703 to 64021723 20 - TSS region transcription start site region 90120
Tssr90121 9 64021898 to 64021906 8 - TSS region transcription start site region 90121
Tssr90122 9 64021922 to 64021942 20 - TSS region transcription start site region 90122
Tssr90123 9 64021944 to 64021960 16 - TSS region transcription start site region 90123
Tssr90124 9 64021995 to 64022008 13 - TSS region transcription start site region 90124
Tssr90125 9 64022027 to 64022042 15 - TSS region transcription start site region 90125
Tssr90126 9 64022043 to 64022066 23 - TSS region transcription start site region 90126
Tssr90127 9 64022083 to 64022101 18 - TSS region transcription start site region 90127
Tssr90128 9 64022111 to 64022129 18 - TSS region transcription start site region 90128
Tssr85587 9 64022234 to 64022271 37 + TSS region transcription start site region 85587
Tssr90129 9 64022984 to 64022998 14 - TSS region transcription start site region 90129
1700055C04Rik 9 64038465 to 64041465 3000 - lncRNA gene RIKEN cDNA 1700055C04 gene
Gm25606 9 64048496 to 64048590 94 + rRNA gene predicted gene, 25606
1110036E04Rik 9 64049829 to 64054100 4271 + lincRNA gene RIKEN cDNA 1110036E04 gene
Cpgi21921 9 64060171 to 64060676 505 CpG island CpG island 21921
Scarletltr 9 64080761 to 64086961 6200 + lncRNA gene Scarletltr, erythroid developmental long intergenic non-protein coding transcript
Cpgi21922 9 64084675 to 64085266 591 CpG island CpG island 21922
Tssr85588 9 64084907 to 64084918 11 + TSS region transcription start site region 85588
Tssr85589 9 64084919 to 64084936 17 + TSS region transcription start site region 85589
Gm39360 9 64088485 to 64100555 12070 - lncRNA gene predicted gene, 39360
Tssr85590 9 64092335 to 64092343 8 + TSS region transcription start site region 85590
Lctl 9 64117147 to 64138118 20971 + protein coding gene lactase-like
Tssr85591 9 64117155 to 64117191 36 + TSS region transcription start site region 85591
Tssr85592 9 64117225 to 64117242 17 + TSS region transcription start site region 85592
Tssr85593 9 64117254 to 64117267 13 + TSS region transcription start site region 85593
Tssr85594 9 64121501 to 64121504 3 + TSS region transcription start site region 85594
D9Mit209 9 64127276 to 64127401 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 209
Zwilch 9 64137144 to 64172931 35787 - protein coding gene zwilch kinetochore protein
Tssr85595 9 64139273 to 64139277 4 + TSS region transcription start site region 85595
Tssr90130 9 64158047 to 64158049 2 - TSS region transcription start site region 90130
Cpgi21923 9 64172411 to 64173083 672 CpG island CpG island 21923
Tssr90131 9 64172889 to 64172918 29 - TSS region transcription start site region 90131
Tssr85596 9 64173364 to 64173388 24 + TSS region transcription start site region 85596
Rpl4 9 64173387 to 64178562 5175 + protein coding gene ribosomal protein L4
Tssr2907 9 64173398 to 64173399 1 + TSS region transcription start site region 2907
Tssr85597 9 64174912 to 64174972 60 + TSS region transcription start site region 85597
Gm23344 9 64175048 to 64175115 67 + snoRNA gene predicted gene, 23344
Tssr85598 9 64175422 to 64175426 4 + TSS region transcription start site region 85598
Snord16a 9 64175432 to 64175522 90 + snoRNA gene small nucleolar RNA, C/D box 16A
Tssr85599 9 64175588 to 64175613 25 + TSS region transcription start site region 85599
Gm22571 9 64175873 to 64175942 69 + snoRNA gene predicted gene, 22571
Gm23136 9 64176661 to 64176759 98 + snoRNA gene predicted gene, 23136
Tssr85600 9 64176969 to 64177018 49 + TSS region transcription start site region 85600
Gm22455 9 64177123 to 64177193 70 + snoRNA gene predicted gene, 22455
Tssr85601 9 64177374 to 64177398 24 + TSS region transcription start site region 85601
Tssr85602 9 64177441 to 64177452 11 + TSS region transcription start site region 85602
Tssr85603 9 64177712 to 64177738 26 + TSS region transcription start site region 85603
Tssr85604 9 64177752 to 64177780 28 + TSS region transcription start site region 85604
Tssr90132 9 64177788 to 64177811 23 - TSS region transcription start site region 90132
Tssr85605 9 64178275 to 64178356 81 + TSS region transcription start site region 85605
Tssr90133 9 64178343 to 64178379 36 - TSS region transcription start site region 90133
Tssr90134 9 64178395 to 64178449 54 - TSS region transcription start site region 90134
Tssr85606 9 64178400 to 64178416 16 + TSS region transcription start site region 85606
Cpgi21924 9 64179176 to 64179638 462 CpG island CpG island 21924
Tssr85607 9 64179271 to 64179282 11 + TSS region transcription start site region 85607
Tssr85608 9 64179289 to 64179349 60 + TSS region transcription start site region 85608
Snapc5 9 64179297 to 64182688 3391 + protein coding gene small nuclear RNA activating complex, polypeptide 5
Tssr90135 9 64184286 to 64184297 11 - TSS region transcription start site region 90135
Map2k1 9 64185770 to 64253605 67835 - protein coding gene mitogen-activated protein kinase kinase 1
Tssr90136 9 64186101 to 64186119 18 - TSS region transcription start site region 90136
Tssr90137 9 64214633 to 64214638 5 - TSS region transcription start site region 90137
Gm24106 9 64225523 to 64225649 126 + miRNA gene predicted gene, 24106
Gm48855 9 64228339 to 64230795 2456 + lincRNA gene predicted gene, 48855
Tssr90138 9 64230772 to 64230778 6 - TSS region transcription start site region 90138
Splq4 9 120362868 to 63332429 -57030439 QTL spleen weight QTL 4
W10q13 9 120362868 to 63332429 -57030439 QTL weight 10 weeks QTL 13
Tailaq2 9 120362868 to 63332429 -57030439 QTL tail length adjusted QTL 2