Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Eae9 | 9 | 13823572 | QTL | experimental allergic encephalomyelitis susceptibility 9 | ||
Feml2 | 9 | 5700000 | QTL | femur length in high growth mice 2 | ||
Cpgi21907 | 9 | 495 | CpG island | CpG island 21907 | ||
Cpgi21908 | 9 | 1077 | CpG island | CpG island 21908 | ||
Gm25064 | 9 | 106 | + | snRNA gene | predicted gene, 25064 | |
Skor1 | 9 | 10791 | - | protein coding gene | SKI family transcriptional corepressor 1 | |
Cpgi21909 | 9 | 556 | CpG island | CpG island 21909 | ||
Cpgi21910 | 9 | 976 | CpG island | CpG island 21910 | ||
Cpgi21911 | 9 | 3873 | CpG island | CpG island 21911 | ||
Cpgi21912 | 9 | 1457 | CpG island | CpG island 21912 | ||
Tssr2903 | 9 | 19 | - | TSS region | transcription start site region 2903 | |
Tssr90083 | 9 | 5 | - | TSS region | transcription start site region 90083 | |
Cpgi21913 | 9 | 437 | CpG island | CpG island 21913 | ||
Map2k5 | 9 | 214134 | - | protein coding gene | mitogen-activated protein kinase kinase 5 | |
Tssr90084 | 9 | 36 | - | TSS region | transcription start site region 90084 | |
Tssr2904 | 9 | 4 | + | TSS region | transcription start site region 2904 | |
Tssr90085 | 9 | 16 | - | TSS region | transcription start site region 90085 | |
Tssr90086 | 9 | 16 | - | TSS region | transcription start site region 90086 | |
Tssr90087 | 9 | 11 | - | TSS region | transcription start site region 90087 | |
Tssr85580 | 9 | 35 | + | TSS region | transcription start site region 85580 | |
Gm39355 | 9 | 1241 | - | lncRNA gene | predicted gene, 39355 | |
Tssr90088 | 9 | 25 | - | TSS region | transcription start site region 90088 | |
D9Mit105 | 9 | 141 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 105 | ||
Tssr2905 | 9 | 8 | + | TSS region | transcription start site region 2905 | |
Cpgi21914 | 9 | 872 | CpG island | CpG island 21914 | ||
Tssr90089 | 9 | 142 | - | TSS region | transcription start site region 90089 | |
Tssr90090 | 9 | 15 | - | TSS region | transcription start site region 90090 | |
Tssr90091 | 9 | 79 | - | TSS region | transcription start site region 90091 | |
Tssr90092 | 9 | 20 | - | TSS region | transcription start site region 90092 | |
Tssr90093 | 9 | 26 | - | TSS region | transcription start site region 90093 | |
2300009A05Rik | 9 | 4797 | - | protein coding gene | RIKEN cDNA 2300009A05 gene | |
Cpgi21915 | 9 | 1060 | CpG island | CpG island 21915 | ||
Tssr90094 | 9 | 31 | - | TSS region | transcription start site region 90094 | |
Tssr90095 | 9 | 76 | - | TSS region | transcription start site region 90095 | |
Tssr90096 | 9 | 46 | - | TSS region | transcription start site region 90096 | |
Tssr90097 | 9 | 38 | - | TSS region | transcription start site region 90097 | |
Gm16759 | 9 | 81291 | + | lncRNA gene | predicted gene, 16759 | |
Iqch | 9 | 181038 | - | protein coding gene | IQ motif containing H | |
Gm25995 | 9 | 141 | + | snRNA gene | predicted gene, 25995 | |
D9Bwg1371 | 9 | 303 | DNA segment | DNA segment, Chr 9, Brigham & Women's Genetics 1371 | ||
Gm6257 | 9 | 909 | - | pseudogene | predicted gene 6257 | |
Gm35809 | 9 | 53318 | + | lncRNA gene | predicted gene, 35809 | |
D9Mit338 | 9 | 124 | DNA segment | DNA Segment, Chr 9 Massachusetts Institute of Technology 338 | ||
Tssr2906 | 9 | 4 | + | TSS region | transcription start site region 2906 | |
Gm39358 | 9 | 6215 | + | lncRNA gene | predicted gene, 39358 | |
Cpgi21916 | 9 | 1078 | CpG island | CpG island 21916 | ||
Tssr90098 | 9 | 11 | - | TSS region | transcription start site region 90098 | |
Tssr90099 | 9 | 30 | - | TSS region | transcription start site region 90099 | |
Tssr90100 | 9 | 9 | - | TSS region | transcription start site region 90100 | |
Aagab | 9 | 39269 | + | protein coding gene | alpha- and gamma-adaptin binding protein | |
Tssr85581 | 9 | 53 | + | TSS region | transcription start site region 85581 | |
D9Dcr1 | 9 | 95 | DNA segment | DNA segment, Chr 9, Derry C. Roopenian 1 | ||
avc3 | 9 | 5225145 | heritable phenotypic marker | atrioventricular canal 3 | ||
D9Mit106 | 9 | 98 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 106 | ||
Smad3 | 9 | 111227 | - | protein coding gene | SMAD family member 3 | |
Tssr90101 | 9 | 7 | - | TSS region | transcription start site region 90101 | |
Tssr90102 | 9 | 11 | - | TSS region | transcription start site region 90102 | |
Tssr90103 | 9 | 22 | - | TSS region | transcription start site region 90103 | |
Tssr90104 | 9 | 18 | - | TSS region | transcription start site region 90104 | |
Tssr85582 | 9 | 48 | + | TSS region | transcription start site region 85582 | |
Tssr90105 | 9 | 14 | - | TSS region | transcription start site region 90105 | |
Tssr90106 | 9 | 11 | - | TSS region | transcription start site region 90106 | |
Tssr90107 | 9 | 26 | - | TSS region | transcription start site region 90107 | |
Tssr90108 | 9 | 5 | - | TSS region | transcription start site region 90108 | |
Tssr85583 | 9 | 36 | + | TSS region | transcription start site region 85583 | |
Tssr85584 | 9 | 19 | + | TSS region | transcription start site region 85584 | |
Tssr85585 | 9 | 20 | + | TSS region | transcription start site region 85585 | |
Tssr90109 | 9 | 3 | - | TSS region | transcription start site region 90109 | |
Tssr90110 | 9 | 41 | - | TSS region | transcription start site region 90110 | |
Tssr90111 | 9 | 3 | - | TSS region | transcription start site region 90111 | |
Cpgi21917 | 9 | 1773 | CpG island | CpG island 21917 | ||
Tssr90112 | 9 | 14 | - | TSS region | transcription start site region 90112 | |
Tssr90113 | 9 | 31 | - | TSS region | transcription start site region 90113 | |
Tssr90114 | 9 | 19 | - | TSS region | transcription start site region 90114 | |
Gm35941 | 9 | 7944 | - | lncRNA gene | predicted gene, 35941 | |
D9Mit31 | 9 | 126 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 31 | ||
D9Mit245 | 9 | 194 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 245 | ||
Gm39359 | 9 | 1699 | - | lncRNA gene | predicted gene, 39359 | |
Gm2553 | 9 | 604 | - | pseudogene | predicted gene 2553 | |
Tssr90115 | 9 | 3 | - | TSS region | transcription start site region 90115 | |
Tssr85586 | 9 | 10 | + | TSS region | transcription start site region 85586 | |
D9Mit175 | 9 | 131 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 175 | ||
Gm18541 | 9 | 537 | + | pseudogene | predicted gene, 18541 | |
Cpgi21918 | 9 | 205 | CpG island | CpG island 21918 | ||
Gm36033 | 9 | 8193 | - | lincRNA gene | predicted gene, 36033 | |
Tssr90116 | 9 | 13 | - | TSS region | transcription start site region 90116 | |
Smad6 | 9 | 68983 | - | protein coding gene | SMAD family member 6 | |
Cpgi21919 | 9 | 619 | CpG island | CpG island 21919 | ||
D9Mit144.2 | 9 | 113 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 144.2 | ||
D9Mit144 | 9 | 145 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 144 | ||
Tssr90117 | 9 | 4 | - | TSS region | transcription start site region 90117 | |
Tssr90118 | 9 | 2 | - | TSS region | transcription start site region 90118 | |
Tssr90119 | 9 | 18 | - | TSS region | transcription start site region 90119 | |
Cpgi21920 | 9 | 3417 | CpG island | CpG island 21920 | ||
Tssr90120 | 9 | 20 | - | TSS region | transcription start site region 90120 | |
Tssr90121 | 9 | 8 | - | TSS region | transcription start site region 90121 | |
Tssr90122 | 9 | 20 | - | TSS region | transcription start site region 90122 | |
Tssr90123 | 9 | 16 | - | TSS region | transcription start site region 90123 | |
Tssr90124 | 9 | 13 | - | TSS region | transcription start site region 90124 | |
Tssr90125 | 9 | 15 | - | TSS region | transcription start site region 90125 | |
Tssr90126 | 9 | 23 | - | TSS region | transcription start site region 90126 | |
Tssr90127 | 9 | 18 | - | TSS region | transcription start site region 90127 | |
Tssr90128 | 9 | 18 | - | TSS region | transcription start site region 90128 | |
Tssr85587 | 9 | 37 | + | TSS region | transcription start site region 85587 | |
Tssr90129 | 9 | 14 | - | TSS region | transcription start site region 90129 | |
1700055C04Rik | 9 | 3000 | - | lncRNA gene | RIKEN cDNA 1700055C04 gene | |
Gm25606 | 9 | 94 | + | rRNA gene | predicted gene, 25606 | |
1110036E04Rik | 9 | 4271 | + | lincRNA gene | RIKEN cDNA 1110036E04 gene | |
Cpgi21921 | 9 | 505 | CpG island | CpG island 21921 | ||
Scarletltr | 9 | 6200 | + | lncRNA gene | Scarletltr, erythroid developmental long intergenic non-protein coding transcript | |
Cpgi21922 | 9 | 591 | CpG island | CpG island 21922 | ||
Tssr85588 | 9 | 11 | + | TSS region | transcription start site region 85588 | |
Tssr85589 | 9 | 17 | + | TSS region | transcription start site region 85589 | |
Gm39360 | 9 | 12070 | - | lncRNA gene | predicted gene, 39360 | |
Tssr85590 | 9 | 8 | + | TSS region | transcription start site region 85590 | |
Lctl | 9 | 20971 | + | protein coding gene | lactase-like | |
Tssr85591 | 9 | 36 | + | TSS region | transcription start site region 85591 | |
Tssr85592 | 9 | 17 | + | TSS region | transcription start site region 85592 | |
Tssr85593 | 9 | 13 | + | TSS region | transcription start site region 85593 | |
Tssr85594 | 9 | 3 | + | TSS region | transcription start site region 85594 | |
D9Mit209 | 9 | 125 | DNA segment | DNA segment, Chr 9, Massachusetts Institute of Technology 209 | ||
Zwilch | 9 | 35787 | - | protein coding gene | zwilch kinetochore protein | |
Tssr85595 | 9 | 4 | + | TSS region | transcription start site region 85595 | |
Tssr90130 | 9 | 2 | - | TSS region | transcription start site region 90130 | |
Cpgi21923 | 9 | 672 | CpG island | CpG island 21923 | ||
Tssr90131 | 9 | 29 | - | TSS region | transcription start site region 90131 | |
Tssr85596 | 9 | 24 | + | TSS region | transcription start site region 85596 | |
Rpl4 | 9 | 5175 | + | protein coding gene | ribosomal protein L4 | |
Tssr2907 | 9 | 1 | + | TSS region | transcription start site region 2907 | |
Tssr85597 | 9 | 60 | + | TSS region | transcription start site region 85597 | |
Gm23344 | 9 | 67 | + | snoRNA gene | predicted gene, 23344 | |
Tssr85598 | 9 | 4 | + | TSS region | transcription start site region 85598 | |
Snord16a | 9 | 90 | + | snoRNA gene | small nucleolar RNA, C/D box 16A | |
Tssr85599 | 9 | 25 | + | TSS region | transcription start site region 85599 | |
Gm22571 | 9 | 69 | + | snoRNA gene | predicted gene, 22571 | |
Gm23136 | 9 | 98 | + | snoRNA gene | predicted gene, 23136 | |
Tssr85600 | 9 | 49 | + | TSS region | transcription start site region 85600 | |
Gm22455 | 9 | 70 | + | snoRNA gene | predicted gene, 22455 | |
Tssr85601 | 9 | 24 | + | TSS region | transcription start site region 85601 | |
Tssr85602 | 9 | 11 | + | TSS region | transcription start site region 85602 | |
Tssr85603 | 9 | 26 | + | TSS region | transcription start site region 85603 | |
Tssr85604 | 9 | 28 | + | TSS region | transcription start site region 85604 | |
Tssr90132 | 9 | 23 | - | TSS region | transcription start site region 90132 | |
Tssr85605 | 9 | 81 | + | TSS region | transcription start site region 85605 | |
Tssr90133 | 9 | 36 | - | TSS region | transcription start site region 90133 | |
Tssr90134 | 9 | 54 | - | TSS region | transcription start site region 90134 | |
Tssr85606 | 9 | 16 | + | TSS region | transcription start site region 85606 | |
Cpgi21924 | 9 | 462 | CpG island | CpG island 21924 | ||
Tssr85607 | 9 | 11 | + | TSS region | transcription start site region 85607 | |
Tssr85608 | 9 | 60 | + | TSS region | transcription start site region 85608 | |
Snapc5 | 9 | 3391 | + | protein coding gene | small nuclear RNA activating complex, polypeptide 5 | |
Tssr90135 | 9 | 11 | - | TSS region | transcription start site region 90135 | |
Map2k1 | 9 | 67835 | - | protein coding gene | mitogen-activated protein kinase kinase 1 | |
Tssr90136 | 9 | 18 | - | TSS region | transcription start site region 90136 | |
Tssr90137 | 9 | 5 | - | TSS region | transcription start site region 90137 | |
Gm24106 | 9 | 126 | + | miRNA gene | predicted gene, 24106 | |
Gm48855 | 9 | 2456 | + | lincRNA gene | predicted gene, 48855 | |
Tssr90138 | 9 | 6 | - | TSS region | transcription start site region 90138 | |
Uchl4 | 9 | 1161 | + | protein coding gene | ubiquitin carboxyl-terminal esterase L4 | |
Tssr90139 | 9 | 8 | - | TSS region | transcription start site region 90139 | |
Cpgi21925 | 9 | 1148 | CpG island | CpG island 21925 | ||
Tssr90140 | 9 | 11 | - | TSS region | transcription start site region 90140 | |
Tssr90141 | 9 | 46 | - | TSS region | transcription start site region 90141 | |
Tssr90142 | 9 | 18 | - | TSS region | transcription start site region 90142 | |
Cpgi21926 | 9 | 727 | CpG island | CpG island 21926 | ||
Tssr85609 | 9 | 55 | + | TSS region | transcription start site region 85609 | |
Tipin | 9 | 23843 | + | protein coding gene | timeless interacting protein | |
Tssr85610 | 9 | 19 | + | TSS region | transcription start site region 85610 | |
Gm24289 | 9 | 134 | + | snoRNA gene | predicted gene, 24289 | |
Dis3l | 9 | 34532 | - | protein coding gene | DIS3 like exosome 3'-5' exoribonuclease | |
Tssr90143 | 9 | 4 | - | TSS region | transcription start site region 90143 | |
Tssr85611 | 9 | 10 | + | TSS region | transcription start site region 85611 | |
Cpgi21927 | 9 | 1231 | CpG island | CpG island 21927 | ||
Tssr85612 | 9 | 36 | + | TSS region | transcription start site region 85612 | |
Tssr85613 | 9 | 22 | + | TSS region | transcription start site region 85613 | |
Tssr90144 | 9 | 21 | - | TSS region | transcription start site region 90144 | |
Tssr90145 | 9 | 11 | - | TSS region | transcription start site region 90145 | |
Tssr90146 | 9 | 19 | - | TSS region | transcription start site region 90146 | |
Tssr90147 | 9 | 83 | - | TSS region | transcription start site region 90147 | |
Tssr90148 | 9 | 19 | - | TSS region | transcription start site region 90148 | |
Tailaq2 | 9 | -57030439 | QTL | tail length adjusted QTL 2 | ||
W10q13 | 9 | -57030439 | QTL | weight 10 weeks QTL 13 | ||
Splq4 | 9 | -57030439 | QTL | spleen weight QTL 4 |