Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:62938170-63348961

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Eae9	9	49508998 to 63332570	13823572		QTL	experimental allergic encephalomyelitis susceptibility 9
Feml2	9	57600000 to 63300000	5700000		QTL	femur length in high growth mice 2
Pias1	9	62878366 to 62980879	102513	-	protein coding gene	protein inhibitor of activated STAT 1
Cpgi21905	9	62979916 to 62981336	1420		CpG island	CpG island 21905
Gm35574	9	62980514 to 63010071	29557	+	lncRNA gene	predicted gene, 35574
Tssr90079	9	62980874 to 62980902	28	-	TSS region	transcription start site region 90079
Tssr90080	9	62987893 to 62987898	5	-	TSS region	transcription start site region 90080
Tssr90081	9	62987915 to 62987941	26	-	TSS region	transcription start site region 90081
D9Mit317	9	62994284 to 62994417	133		DNA segment	DNA Segment, Chr 9, Massachusetts Institute of Technology-317
Gm24526	9	63027560 to 63027717	157	+	snRNA gene	predicted gene, 24526
Gm39354	9	63028354 to 63034817	6463	+	lncRNA gene	predicted gene, 39354
Tssr85578	9	63077194 to 63077198	4	+	TSS region	transcription start site region 85578
Gm48193	9	63080267 to 63082973	2706	-	lincRNA gene	predicted gene, 48193
Gm35658	9	63093416 to 63108233	14817	+	lncRNA gene	predicted gene, 35658
Tssr85579	9	63093424 to 63093449	25	+	TSS region	transcription start site region 85579
Cpgi21906	9	63108982 to 63109479	497		CpG island	CpG island 21906
Tssr90082	9	63109309 to 63109338	29	-	TSS region	transcription start site region 90082
Gm6082	9	63117201 to 63117654	453	+	pseudogene	predicted gene 6082
Cpgi21907	9	63123905 to 63124400	495		CpG island	CpG island 21907
Cpgi21908	9	63132037 to 63133114	1077		CpG island	CpG island 21908
Gm25064	9	63133283 to 63133389	106	+	snRNA gene	predicted gene, 25064
Skor1	9	63138170 to 63148961	10791	-	protein coding gene	SKI family transcriptional corepressor 1
Cpgi21909	9	63138464 to 63139020	556		CpG island	CpG island 21909
Cpgi21910	9	63141876 to 63142852	976		CpG island	CpG island 21910
Cpgi21911	9	63143251 to 63147124	3873		CpG island	CpG island 21911
Cpgi21912	9	63148339 to 63149796	1457		CpG island	CpG island 21912
Tssr2903	9	63148915 to 63148934	19	-	TSS region	transcription start site region 2903
Tssr90083	9	63149178 to 63149183	5	-	TSS region	transcription start site region 90083
Cpgi21913	9	63150169 to 63150606	437		CpG island	CpG island 21913
Map2k5	9	63163768 to 63377902	214134	-	protein coding gene	mitogen-activated protein kinase kinase 5
Tssr90084	9	63197359 to 63197395	36	-	TSS region	transcription start site region 90084
Tssr2904	9	63221016 to 63221020	4	+	TSS region	transcription start site region 2904
Tssr90085	9	63223147 to 63223163	16	-	TSS region	transcription start site region 90085
Tssr90086	9	63281224 to 63281240	16	-	TSS region	transcription start site region 90086
Tssr90087	9	63281260 to 63281271	11	-	TSS region	transcription start site region 90087
Tssr85580	9	63281325 to 63281360	35	+	TSS region	transcription start site region 85580
Gm39355	9	63291534 to 63292775	1241	-	lncRNA gene	predicted gene, 39355
Tssr90088	9	63322789 to 63322814	25	-	TSS region	transcription start site region 90088
D9Mit105	9	63332429 to 63332570	141		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 105
Tssr2905	9	63333638 to 63333646	8	+	TSS region	transcription start site region 2905
Splq4	9	120362868 to 63332429	-57030439		QTL	spleen weight QTL 4
W10q13	9	120362868 to 63332429	-57030439		QTL	weight 10 weeks QTL 13
Tailaq2	9	120362868 to 63332429	-57030439		QTL	tail length adjusted QTL 2