Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:62873147-63573163

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Calml4 9 62858080 to 62875921 17841 + protein coding gene calmodulin-like 4
Pias1 9 62878366 to 62980879 102513 - protein coding gene protein inhibitor of activated STAT 1
Tssr90078 9 62886609 to 62886613 4 - TSS region transcription start site region 90078
Cpgi21905 9 62979916 to 62981336 1420 CpG island CpG island 21905
Gm35574 9 62980514 to 63010071 29557 + lncRNA gene predicted gene, 35574
Tssr90079 9 62980874 to 62980902 28 - TSS region transcription start site region 90079
Tssr90080 9 62987893 to 62987898 5 - TSS region transcription start site region 90080
Tssr90081 9 62987915 to 62987941 26 - TSS region transcription start site region 90081
D9Mit317 9 62994284 to 62994417 133 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-317
Gm24526 9 63027560 to 63027717 157 + snRNA gene predicted gene, 24526
Gm39354 9 63028354 to 63034817 6463 + lncRNA gene predicted gene, 39354
Tssr85578 9 63077194 to 63077198 4 + TSS region transcription start site region 85578
Gm48193 9 63080267 to 63082973 2706 - lincRNA gene predicted gene, 48193
Gm35658 9 63093416 to 63108233 14817 + lncRNA gene predicted gene, 35658
Tssr85579 9 63093424 to 63093449 25 + TSS region transcription start site region 85579
Cpgi21906 9 63108982 to 63109479 497 CpG island CpG island 21906
Tssr90082 9 63109309 to 63109338 29 - TSS region transcription start site region 90082
Gm6082 9 63117201 to 63117654 453 + pseudogene predicted gene 6082
Cpgi21907 9 63123905 to 63124400 495 CpG island CpG island 21907
Cpgi21908 9 63132037 to 63133114 1077 CpG island CpG island 21908
Gm25064 9 63133283 to 63133389 106 + snRNA gene predicted gene, 25064
Skor1 9 63138170 to 63148961 10791 - protein coding gene SKI family transcriptional corepressor 1
Cpgi21909 9 63138464 to 63139020 556 CpG island CpG island 21909
Cpgi21910 9 63141876 to 63142852 976 CpG island CpG island 21910
Cpgi21911 9 63143251 to 63147124 3873 CpG island CpG island 21911
Cpgi21912 9 63148339 to 63149796 1457 CpG island CpG island 21912
Tssr2903 9 63148915 to 63148934 19 - TSS region transcription start site region 2903
Tssr90083 9 63149178 to 63149183 5 - TSS region transcription start site region 90083
Cpgi21913 9 63150169 to 63150606 437 CpG island CpG island 21913
Map2k5 9 63163768 to 63377902 214134 - protein coding gene mitogen-activated protein kinase kinase 5
Tssr90084 9 63197359 to 63197395 36 - TSS region transcription start site region 90084
Tssr2904 9 63221016 to 63221020 4 + TSS region transcription start site region 2904
Tssr90085 9 63223147 to 63223163 16 - TSS region transcription start site region 90085
Tssr90086 9 63281224 to 63281240 16 - TSS region transcription start site region 90086
Tssr90087 9 63281260 to 63281271 11 - TSS region transcription start site region 90087
Tssr85580 9 63281325 to 63281360 35 + TSS region transcription start site region 85580
Gm39355 9 63291534 to 63292775 1241 - lncRNA gene predicted gene, 39355
Tssr90088 9 63322789 to 63322814 25 - TSS region transcription start site region 90088
D9Mit105 9 63332429 to 63332570 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 105
Tssr2905 9 63333638 to 63333646 8 + TSS region transcription start site region 2905
Cpgi21914 9 63377267 to 63378139 872 CpG island CpG island 21914
Tssr90089 9 63377624 to 63377766 142 - TSS region transcription start site region 90089
Tssr90090 9 63377814 to 63377829 15 - TSS region transcription start site region 90090
Tssr90091 9 63377835 to 63377914 79 - TSS region transcription start site region 90091
Tssr90092 9 63377960 to 63377980 20 - TSS region transcription start site region 90092
Tssr90093 9 63384772 to 63384798 26 - TSS region transcription start site region 90093
2300009A05Rik 9 63394447 to 63399244 4797 - protein coding gene RIKEN cDNA 2300009A05 gene
Cpgi21915 9 63398628 to 63399688 1060 CpG island CpG island 21915
Tssr90094 9 63399031 to 63399062 31 - TSS region transcription start site region 90094
Tssr90095 9 63399064 to 63399140 76 - TSS region transcription start site region 90095
Tssr90096 9 63399216 to 63399262 46 - TSS region transcription start site region 90096
Tssr90097 9 63399264 to 63399302 38 - TSS region transcription start site region 90097
Gm16759 9 63399376 to 63480667 81291 + lncRNA gene predicted gene, 16759
Iqch 9 63421455 to 63602493 181038 - protein coding gene IQ motif containing H
Gm25995 9 63442319 to 63442460 141 + snRNA gene predicted gene, 25995
D9Bwg1371 9 63443118 to 63443421 303 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1371
Gm6257 9 63443166 to 63444075 909 - pseudogene predicted gene 6257
Gm35809 9 63480686 to 63534004 53318 + lncRNA gene predicted gene, 35809
D9Mit338 9 63487095 to 63487219 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 338
Tssr2906 9 63500725 to 63500729 4 + TSS region transcription start site region 2906
Gm39358 9 63565519 to 63571734 6215 + lncRNA gene predicted gene, 39358
Splq4 9 120362868 to 63332429 -57030439 QTL spleen weight QTL 4
W10q13 9 120362868 to 63332429 -57030439 QTL weight 10 weeks QTL 13
Tailaq2 9 120362868 to 63332429 -57030439 QTL tail length adjusted QTL 2