Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:62627267-64128139

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Gm39353 9 62649717 to 62655598 5881 + lncRNA gene predicted gene, 39353
Tssr90059 9 62666028 to 62666043 15 - TSS region transcription start site region 90059
Tssr90060 9 62666046 to 62666062 16 - TSS region transcription start site region 90060
Tssr90061 9 62666063 to 62666069 6 - TSS region transcription start site region 90061
Tssr90062 9 62666070 to 62666077 7 - TSS region transcription start site region 90062
Tssr90063 9 62666081 to 62666088 7 - TSS region transcription start site region 90063
Cpgi21900 9 62677597 to 62678906 1309 CpG island CpG island 21900
Tssr85556 9 62677833 to 62677843 10 + TSS region transcription start site region 85556
Tssr85557 9 62677848 to 62677863 15 + TSS region transcription start site region 85557
Itga11 9 62677855 to 62783979 106124 + protein coding gene integrin alpha 11
Tssr85558 9 62753365 to 62753413 48 + TSS region transcription start site region 85558
Tssr85559 9 62772927 to 62772941 14 + TSS region transcription start site region 85559
Tssr85560 9 62783520 to 62783539 19 + TSS region transcription start site region 85560
Gm7653 9 62789904 to 62790411 507 + pseudogene predicted gene 7653
Tssr90064 9 62790872 to 62790878 6 - TSS region transcription start site region 90064
Fem1b 9 62791824 to 62811648 19824 - protein coding gene feminization 1 homolog b (C. elegans)
Tssr90065 9 62794916 to 62794955 39 - TSS region transcription start site region 90065
Tssr90066 9 62795003 to 62795007 4 - TSS region transcription start site region 90066
Tssr90067 9 62796494 to 62796532 38 - TSS region transcription start site region 90067
Tssr90068 9 62796912 to 62796928 16 - TSS region transcription start site region 90068
Gm26609 9 62804478 to 62808234 3756 + lincRNA gene predicted gene, 26609
Tssr90069 9 62809852 to 62809861 9 - TSS region transcription start site region 90069
Cpgi21901 9 62810781 to 62812231 1450 CpG island CpG island 21901
Tssr90070 9 62811426 to 62811476 50 - TSS region transcription start site region 90070
Tssr90071 9 62811592 to 62811659 67 - TSS region transcription start site region 90071
Tssr90072 9 62811663 to 62811668 5 - TSS region transcription start site region 90072
Tssr90073 9 62811669 to 62811676 7 - TSS region transcription start site region 90073
Tssr90074 9 62811835 to 62811846 11 - TSS region transcription start site region 90074
Tssr90075 9 62811866 to 62811955 89 - TSS region transcription start site region 90075
Tssr90076 9 62812805 to 62812842 37 - TSS region transcription start site region 90076
Tssr90077 9 62819577 to 62819612 35 - TSS region transcription start site region 90077
Tssr85561 9 62825570 to 62825581 11 + TSS region transcription start site region 85561
Tssr85562 9 62826085 to 62826099 14 + TSS region transcription start site region 85562
Cpgi21902 9 62828713 to 62829037 324 CpG island CpG island 21902
Tssr85563 9 62829095 to 62829121 26 + TSS region transcription start site region 85563
Cpgi21903 9 62838539 to 62839325 786 CpG island CpG island 21903
Tssr85564 9 62838579 to 62838603 24 + TSS region transcription start site region 85564
Tssr85565 9 62838612 to 62838630 18 + TSS region transcription start site region 85565
Tssr85566 9 62838642 to 62838682 40 + TSS region transcription start site region 85566
Tssr85567 9 62838767 to 62838816 49 + TSS region transcription start site region 85567
Cln6 9 62838787 to 62852002 13215 + protein coding gene ceroid-lipofuscinosis, neuronal 6
Tssr85568 9 62838831 to 62838886 55 + TSS region transcription start site region 85568
Gm10653 9 62841477 to 62862024 20547 - pseudogene predicted gene 10653
Tssr85569 9 62844591 to 62844612 21 + TSS region transcription start site region 85569
Tssr85570 9 62846000 to 62846004 4 + TSS region transcription start site region 85570
Tssr2901 9 62846970 to 62846989 19 + TSS region transcription start site region 2901
Tssr85571 9 62851047 to 62851054 7 + TSS region transcription start site region 85571
Tssr85572 9 62851418 to 62851443 25 + TSS region transcription start site region 85572
Tssr85573 9 62851625 to 62851656 31 + TSS region transcription start site region 85573
Gm47274 9 62856066 to 62856462 396 + pseudogene predicted gene, 47274
Cpgi21904 9 62857603 to 62857785 182 CpG island CpG island 21904
Calml4 9 62858080 to 62875921 17841 + protein coding gene calmodulin-like 4
Tssr85574 9 62858085 to 62858138 53 + TSS region transcription start site region 85574
Tssr85575 9 62868640 to 62868649 9 + TSS region transcription start site region 85575
Tssr85576 9 62868652 to 62868703 51 + TSS region transcription start site region 85576
Tssr85577 9 62868704 to 62868715 11 + TSS region transcription start site region 85577
Tssr2902 9 62868732 to 62868733 1 + TSS region transcription start site region 2902
Pias1 9 62878366 to 62980879 102513 - protein coding gene protein inhibitor of activated STAT 1
Tssr90078 9 62886609 to 62886613 4 - TSS region transcription start site region 90078
Cpgi21905 9 62979916 to 62981336 1420 CpG island CpG island 21905
Gm35574 9 62980514 to 63010071 29557 + lncRNA gene predicted gene, 35574
Tssr90079 9 62980874 to 62980902 28 - TSS region transcription start site region 90079
Tssr90080 9 62987893 to 62987898 5 - TSS region transcription start site region 90080
Tssr90081 9 62987915 to 62987941 26 - TSS region transcription start site region 90081
D9Mit317 9 62994284 to 62994417 133 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-317
Gm24526 9 63027560 to 63027717 157 + snRNA gene predicted gene, 24526
Gm39354 9 63028354 to 63034817 6463 + lncRNA gene predicted gene, 39354
Tssr85578 9 63077194 to 63077198 4 + TSS region transcription start site region 85578
Gm48193 9 63080267 to 63082973 2706 - lincRNA gene predicted gene, 48193
Gm35658 9 63093416 to 63108233 14817 + lncRNA gene predicted gene, 35658
Tssr85579 9 63093424 to 63093449 25 + TSS region transcription start site region 85579
Cpgi21906 9 63108982 to 63109479 497 CpG island CpG island 21906
Tssr90082 9 63109309 to 63109338 29 - TSS region transcription start site region 90082
Gm6082 9 63117201 to 63117654 453 + pseudogene predicted gene 6082
Cpgi21907 9 63123905 to 63124400 495 CpG island CpG island 21907
Cpgi21908 9 63132037 to 63133114 1077 CpG island CpG island 21908
Gm25064 9 63133283 to 63133389 106 + snRNA gene predicted gene, 25064
Skor1 9 63138170 to 63148961 10791 - protein coding gene SKI family transcriptional corepressor 1
Cpgi21909 9 63138464 to 63139020 556 CpG island CpG island 21909
Cpgi21910 9 63141876 to 63142852 976 CpG island CpG island 21910
Cpgi21911 9 63143251 to 63147124 3873 CpG island CpG island 21911
Cpgi21912 9 63148339 to 63149796 1457 CpG island CpG island 21912
Tssr2903 9 63148915 to 63148934 19 - TSS region transcription start site region 2903
Tssr90083 9 63149178 to 63149183 5 - TSS region transcription start site region 90083
Cpgi21913 9 63150169 to 63150606 437 CpG island CpG island 21913
Map2k5 9 63163768 to 63377902 214134 - protein coding gene mitogen-activated protein kinase kinase 5
Tssr90084 9 63197359 to 63197395 36 - TSS region transcription start site region 90084
Tssr2904 9 63221016 to 63221020 4 + TSS region transcription start site region 2904
Tssr90085 9 63223147 to 63223163 16 - TSS region transcription start site region 90085
Tssr90086 9 63281224 to 63281240 16 - TSS region transcription start site region 90086
Tssr90087 9 63281260 to 63281271 11 - TSS region transcription start site region 90087
Tssr85580 9 63281325 to 63281360 35 + TSS region transcription start site region 85580
Gm39355 9 63291534 to 63292775 1241 - lncRNA gene predicted gene, 39355
Tssr90088 9 63322789 to 63322814 25 - TSS region transcription start site region 90088
D9Mit105 9 63332429 to 63332570 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 105
Tssr2905 9 63333638 to 63333646 8 + TSS region transcription start site region 2905
Cpgi21914 9 63377267 to 63378139 872 CpG island CpG island 21914
Tssr90089 9 63377624 to 63377766 142 - TSS region transcription start site region 90089
Tssr90090 9 63377814 to 63377829 15 - TSS region transcription start site region 90090
Tssr90091 9 63377835 to 63377914 79 - TSS region transcription start site region 90091
Tssr90092 9 63377960 to 63377980 20 - TSS region transcription start site region 90092
Tssr90093 9 63384772 to 63384798 26 - TSS region transcription start site region 90093
2300009A05Rik 9 63394447 to 63399244 4797 - protein coding gene RIKEN cDNA 2300009A05 gene
Cpgi21915 9 63398628 to 63399688 1060 CpG island CpG island 21915
Tssr90094 9 63399031 to 63399062 31 - TSS region transcription start site region 90094
Tssr90095 9 63399064 to 63399140 76 - TSS region transcription start site region 90095
Tssr90096 9 63399216 to 63399262 46 - TSS region transcription start site region 90096
Tssr90097 9 63399264 to 63399302 38 - TSS region transcription start site region 90097
Gm16759 9 63399376 to 63480667 81291 + lncRNA gene predicted gene, 16759
Iqch 9 63421455 to 63602493 181038 - protein coding gene IQ motif containing H
Gm25995 9 63442319 to 63442460 141 + snRNA gene predicted gene, 25995
D9Bwg1371 9 63443118 to 63443421 303 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1371
Gm6257 9 63443166 to 63444075 909 - pseudogene predicted gene 6257
Gm35809 9 63480686 to 63534004 53318 + lncRNA gene predicted gene, 35809
D9Mit338 9 63487095 to 63487219 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 338
Tssr2906 9 63500725 to 63500729 4 + TSS region transcription start site region 2906
Gm39358 9 63565519 to 63571734 6215 + lncRNA gene predicted gene, 39358
Cpgi21916 9 63602051 to 63603129 1078 CpG island CpG island 21916
Tssr90098 9 63602449 to 63602460 11 - TSS region transcription start site region 90098
Tssr90099 9 63602464 to 63602494 30 - TSS region transcription start site region 90099
Tssr90100 9 63602496 to 63602505 9 - TSS region transcription start site region 90100
Aagab 9 63602628 to 63641897 39269 + protein coding gene alpha- and gamma-adaptin binding protein
Tssr85581 9 63602650 to 63602703 53 + TSS region transcription start site region 85581
D9Dcr1 9 63603875 to 63603970 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 1
avc3 9 63603876 to 68829021 5225145 heritable phenotypic marker atrioventricular canal 3
D9Mit106 9 63603876 to 63603974 98 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 106
Smad3 9 63646767 to 63757994 111227 - protein coding gene SMAD family member 3
Tssr90101 9 63666789 to 63666796 7 - TSS region transcription start site region 90101
Tssr90102 9 63666802 to 63666813 11 - TSS region transcription start site region 90102
Tssr90103 9 63666823 to 63666845 22 - TSS region transcription start site region 90103
Tssr90104 9 63667550 to 63667568 18 - TSS region transcription start site region 90104
Tssr85582 9 63690768 to 63690816 48 + TSS region transcription start site region 85582
Tssr90105 9 63706416 to 63706430 14 - TSS region transcription start site region 90105
Tssr90106 9 63711983 to 63711994 11 - TSS region transcription start site region 90106
Tssr90107 9 63714743 to 63714769 26 - TSS region transcription start site region 90107
Tssr90108 9 63719041 to 63719046 5 - TSS region transcription start site region 90108
Tssr85583 9 63719256 to 63719292 36 + TSS region transcription start site region 85583
Tssr85584 9 63731620 to 63731639 19 + TSS region transcription start site region 85584
Tssr85585 9 63737807 to 63737827 20 + TSS region transcription start site region 85585
Tssr90109 9 63738364 to 63738367 3 - TSS region transcription start site region 90109
Tssr90110 9 63739035 to 63739076 41 - TSS region transcription start site region 90110
Tssr90111 9 63745509 to 63745512 3 - TSS region transcription start site region 90111
Cpgi21917 9 63756865 to 63758638 1773 CpG island CpG island 21917
Tssr90112 9 63757884 to 63757898 14 - TSS region transcription start site region 90112
Tssr90113 9 63757933 to 63757964 31 - TSS region transcription start site region 90113
Tssr90114 9 63758171 to 63758190 19 - TSS region transcription start site region 90114
Gm35941 9 63772754 to 63780698 7944 - lncRNA gene predicted gene, 35941
D9Mit31 9 63784313 to 63784439 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 31
D9Mit245 9 63784897 to 63785091 194 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 245
Gm39359 9 63794105 to 63795804 1699 - lncRNA gene predicted gene, 39359
Gm2553 9 63801193 to 63801797 604 - pseudogene predicted gene 2553
Tssr90115 9 63838064 to 63838067 3 - TSS region transcription start site region 90115
Tssr85586 9 63876192 to 63876202 10 + TSS region transcription start site region 85586
D9Mit175 9 63886294 to 63886425 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 175
Gm18541 9 63898265 to 63898802 537 + pseudogene predicted gene, 18541
Cpgi21918 9 63927651 to 63927856 205 CpG island CpG island 21918
Gm36033 9 63935908 to 63944101 8193 - lincRNA gene predicted gene, 36033
Tssr90116 9 63941774 to 63941787 13 - TSS region transcription start site region 90116
Smad6 9 63953076 to 64022059 68983 - protein coding gene SMAD family member 6
Cpgi21919 9 63953490 to 63954109 619 CpG island CpG island 21919
D9Mit144.2 9 63987620 to 63987733 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 144.2
D9Mit144 9 63987689 to 63987834 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 144
Tssr90117 9 64002565 to 64002569 4 - TSS region transcription start site region 90117
Tssr90118 9 64015033 to 64015035 2 - TSS region transcription start site region 90118
Tssr90119 9 64017031 to 64017049 18 - TSS region transcription start site region 90119
Cpgi21920 9 64019959 to 64023376 3417 CpG island CpG island 21920
Tssr90120 9 64021703 to 64021723 20 - TSS region transcription start site region 90120
Tssr90121 9 64021898 to 64021906 8 - TSS region transcription start site region 90121
Tssr90122 9 64021922 to 64021942 20 - TSS region transcription start site region 90122
Tssr90123 9 64021944 to 64021960 16 - TSS region transcription start site region 90123
Tssr90124 9 64021995 to 64022008 13 - TSS region transcription start site region 90124
Tssr90125 9 64022027 to 64022042 15 - TSS region transcription start site region 90125
Tssr90126 9 64022043 to 64022066 23 - TSS region transcription start site region 90126
Tssr90127 9 64022083 to 64022101 18 - TSS region transcription start site region 90127
Tssr90128 9 64022111 to 64022129 18 - TSS region transcription start site region 90128
Tssr85587 9 64022234 to 64022271 37 + TSS region transcription start site region 85587
Tssr90129 9 64022984 to 64022998 14 - TSS region transcription start site region 90129
1700055C04Rik 9 64038465 to 64041465 3000 - lncRNA gene RIKEN cDNA 1700055C04 gene
Gm25606 9 64048496 to 64048590 94 + rRNA gene predicted gene, 25606
1110036E04Rik 9 64049829 to 64054100 4271 + lincRNA gene RIKEN cDNA 1110036E04 gene
Cpgi21921 9 64060171 to 64060676 505 CpG island CpG island 21921
Scarletltr 9 64080761 to 64086961 6200 + lncRNA gene Scarletltr, erythroid developmental long intergenic non-protein coding transcript
Cpgi21922 9 64084675 to 64085266 591 CpG island CpG island 21922
Tssr85588 9 64084907 to 64084918 11 + TSS region transcription start site region 85588
Tssr85589 9 64084919 to 64084936 17 + TSS region transcription start site region 85589
Gm39360 9 64088485 to 64100555 12070 - lncRNA gene predicted gene, 39360
Tssr85590 9 64092335 to 64092343 8 + TSS region transcription start site region 85590
Lctl 9 64117147 to 64138118 20971 + protein coding gene lactase-like
Tssr85591 9 64117155 to 64117191 36 + TSS region transcription start site region 85591
Tssr85592 9 64117225 to 64117242 17 + TSS region transcription start site region 85592
Tssr85593 9 64117254 to 64117267 13 + TSS region transcription start site region 85593
Tssr85594 9 64121501 to 64121504 3 + TSS region transcription start site region 85594
D9Mit209 9 64127276 to 64127401 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 209
W10q13 9 120362868 to 63332429 -57030439 QTL weight 10 weeks QTL 13
Splq4 9 120362868 to 63332429 -57030439 QTL spleen weight QTL 4
Tailaq2 9 120362868 to 63332429 -57030439 QTL tail length adjusted QTL 2