Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:62162927-63382941

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Gm35227 9 62166790 to 62187605 20815 + lncRNA gene predicted gene, 35227
Gm47262 9 62241670 to 62243997 2327 + lincRNA gene predicted gene, 47262
A730043L09Rik 9 62242596 to 62244100 1504 - lincRNA gene RIKEN cDNA A730043L09 gene
Gm25603 9 62242763 to 62242867 104 - miRNA gene predicted gene, 25603
Cpgi21891 9 62244032 to 62244262 230 CpG island CpG island 21891
D9Mit208 9 62266473 to 62266581 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 208
1700013K18Rik 9 62267375 to 62267842 467 unclassified gene RIKEN cDNA 1700013K18 gene
Spesp1 9 62270729 to 62282179 11450 - protein coding gene sperm equatorial segment protein 1
Cpgi21892 9 62272986 to 62273315 329 CpG island CpG island 21892
Cpgi21893 9 62281901 to 62282343 442 CpG island CpG island 21893
Tssr90031 9 62282136 to 62282143 7 - TSS region transcription start site region 90031
Tssr90032 9 62282145 to 62282154 9 - TSS region transcription start site region 90032
Tssr90033 9 62282158 to 62282163 5 - TSS region transcription start site region 90033
Tssr90034 9 62282165 to 62282217 52 - TSS region transcription start site region 90034
Gm35288 9 62298502 to 62336649 38147 + lincRNA gene predicted gene, 35288
Cpgi21894 9 62340687 to 62344855 4168 CpG island CpG island 21894
Tssr90035 9 62341155 to 62341165 10 - TSS region transcription start site region 90035
Tssr85520 9 62341338 to 62341390 52 + TSS region transcription start site region 85520
Anp32a 9 62341343 to 62378804 37461 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
Tssr85521 9 62341393 to 62341416 23 + TSS region transcription start site region 85521
Tssr85522 9 62341441 to 62341452 11 + TSS region transcription start site region 85522
Gm20346 9 62341502 to 62344600 3098 - protein coding gene predicted gene, 20346
Tssr85523 9 62341893 to 62341926 33 + TSS region transcription start site region 85523
Tssr85524 9 62342059 to 62342082 23 + TSS region transcription start site region 85524
Tssr85525 9 62342089 to 62342112 23 + TSS region transcription start site region 85525
Tssr85526 9 62342121 to 62342145 24 + TSS region transcription start site region 85526
Tssr2899 9 62342338 to 62342359 21 + TSS region transcription start site region 2899
Tssr85527 9 62342449 to 62342473 24 + TSS region transcription start site region 85527
Tssr90036 9 62343272 to 62343310 38 - TSS region transcription start site region 90036
Tssr90037 9 62343566 to 62343599 33 - TSS region transcription start site region 90037
Tssr90038 9 62344018 to 62344058 40 - TSS region transcription start site region 90038
Tssr90039 9 62344639 to 62344668 29 - TSS region transcription start site region 90039
Tssr85528 9 62344755 to 62344771 16 + TSS region transcription start site region 85528
Tssr85529 9 62344783 to 62344799 16 + TSS region transcription start site region 85529
Tssr85530 9 62344873 to 62344910 37 + TSS region transcription start site region 85530
Tssr2900 9 62344903 to 62344908 5 - TSS region transcription start site region 2900
Tssr85531 9 62345357 to 62345367 10 + TSS region transcription start site region 85531
Tssr85532 9 62345387 to 62345405 18 + TSS region transcription start site region 85532
Tssr85533 9 62345423 to 62345442 19 + TSS region transcription start site region 85533
Tssr85534 9 62345446 to 62345453 7 + TSS region transcription start site region 85534
Tssr85535 9 62351166 to 62351170 4 + TSS region transcription start site region 85535
Tssr85536 9 62351459 to 62351460 1 + TSS region transcription start site region 85536
Cpgi21895 9 62363606 to 62363982 376 CpG island CpG island 21895
Tssr85537 9 62366915 to 62366934 19 + TSS region transcription start site region 85537
Tssr85538 9 62366937 to 62366948 11 + TSS region transcription start site region 85538
Tssr85539 9 62367403 to 62367441 38 + TSS region transcription start site region 85539
Tssr85540 9 62367871 to 62367883 12 + TSS region transcription start site region 85540
Tssr85541 9 62367976 to 62368017 41 + TSS region transcription start site region 85541
Tssr85542 9 62368031 to 62368040 9 + TSS region transcription start site region 85542
Tssr85543 9 62368045 to 62368054 9 + TSS region transcription start site region 85543
Tssr85544 9 62373159 to 62373182 23 + TSS region transcription start site region 85544
Tssr85545 9 62373189 to 62373197 8 + TSS region transcription start site region 85545
Tssr85546 9 62373457 to 62373488 31 + TSS region transcription start site region 85546
Tssr85547 9 62373500 to 62373537 37 + TSS region transcription start site region 85547
Tssr85548 9 62373547 to 62373571 24 + TSS region transcription start site region 85548
Tssr85549 9 62373603 to 62373630 27 + TSS region transcription start site region 85549
Tssr85550 9 62373635 to 62373648 13 + TSS region transcription start site region 85550
Tssr85551 9 62374649 to 62374675 26 + TSS region transcription start site region 85551
Tssr90040 9 62374686 to 62374728 42 - TSS region transcription start site region 90040
Tssr85552 9 62377294 to 62377334 40 + TSS region transcription start site region 85552
Tssr90041 9 62377327 to 62377355 28 - TSS region transcription start site region 90041
Tssr90042 9 62377356 to 62377372 16 - TSS region transcription start site region 90042
Tssr90043 9 62377575 to 62377626 51 - TSS region transcription start site region 90043
Gm40522 9 62383759 to 62384904 1145 + lncRNA gene predicted gene, 40522
Tssr85553 9 62389957 to 62389960 3 + TSS region transcription start site region 85553
Tssr85554 9 62409252 to 62409295 43 + TSS region transcription start site region 85554
Gm40523 9 62414337 to 62415667 1330 - lncRNA gene predicted gene, 40523
Cpgi21896 9 62415447 to 62415669 222 CpG island CpG island 21896
Coro2b 9 62419492 to 62537044 117552 - protein coding gene coronin, actin binding protein, 2B
Tssr85555 9 62421309 to 62421326 17 + TSS region transcription start site region 85555
Tssr90044 9 62435771 to 62435777 6 - TSS region transcription start site region 90044
Gm40525 9 62439767 to 62446733 6966 + protein coding gene predicted gene, 40525
Tssr90045 9 62453682 to 62453686 4 - TSS region transcription start site region 90045
Cpgi21897 9 62471668 to 62471855 187 CpG island CpG island 21897
Tssr90046 9 62476602 to 62476606 4 - TSS region transcription start site region 90046
Cpgi21898 9 62488769 to 62489028 259 CpG island CpG island 21898
Tssr90047 9 62497856 to 62497868 12 - TSS region transcription start site region 90047
Tssr90048 9 62510552 to 62510570 18 - TSS region transcription start site region 90048
Tssr90049 9 62510586 to 62510605 19 - TSS region transcription start site region 90049
n-R5s84 9 62515029 to 62515137 108 + rRNA gene nuclear encoded rRNA 5S 84
Cpgi21899 9 62536096 to 62537329 1233 CpG island CpG island 21899
Tssr90050 9 62536747 to 62536767 20 - TSS region transcription start site region 90050
Tssr90051 9 62536770 to 62536832 62 - TSS region transcription start site region 90051
Tssr90052 9 62536900 to 62536911 11 - TSS region transcription start site region 90052
Tssr90053 9 62536946 to 62536951 5 - TSS region transcription start site region 90053
Tssr90054 9 62536967 to 62536986 19 - TSS region transcription start site region 90054
Tssr90055 9 62537005 to 62537016 11 - TSS region transcription start site region 90055
Tssr90056 9 62537036 to 62537061 25 - TSS region transcription start site region 90056
Tssr90057 9 62537335 to 62537354 19 - TSS region transcription start site region 90057
Tssr90058 9 62537371 to 62537380 9 - TSS region transcription start site region 90058
Gm39352 9 62537881 to 62541296 3415 - lncRNA gene predicted gene, 39352
Gm39353 9 62649717 to 62655598 5881 + lncRNA gene predicted gene, 39353
Tssr90059 9 62666028 to 62666043 15 - TSS region transcription start site region 90059
Tssr90060 9 62666046 to 62666062 16 - TSS region transcription start site region 90060
Tssr90061 9 62666063 to 62666069 6 - TSS region transcription start site region 90061
Tssr90062 9 62666070 to 62666077 7 - TSS region transcription start site region 90062
Tssr90063 9 62666081 to 62666088 7 - TSS region transcription start site region 90063
Cpgi21900 9 62677597 to 62678906 1309 CpG island CpG island 21900
Tssr85556 9 62677833 to 62677843 10 + TSS region transcription start site region 85556
Tssr85557 9 62677848 to 62677863 15 + TSS region transcription start site region 85557
Itga11 9 62677855 to 62783979 106124 + protein coding gene integrin alpha 11
Tssr85558 9 62753365 to 62753413 48 + TSS region transcription start site region 85558
Tssr85559 9 62772927 to 62772941 14 + TSS region transcription start site region 85559
Tssr85560 9 62783520 to 62783539 19 + TSS region transcription start site region 85560
Gm7653 9 62789904 to 62790411 507 + pseudogene predicted gene 7653
Tssr90064 9 62790872 to 62790878 6 - TSS region transcription start site region 90064
Fem1b 9 62791824 to 62811648 19824 - protein coding gene feminization 1 homolog b (C. elegans)
Tssr90065 9 62794916 to 62794955 39 - TSS region transcription start site region 90065
Tssr90066 9 62795003 to 62795007 4 - TSS region transcription start site region 90066
Tssr90067 9 62796494 to 62796532 38 - TSS region transcription start site region 90067
Tssr90068 9 62796912 to 62796928 16 - TSS region transcription start site region 90068
Gm26609 9 62804478 to 62808234 3756 + lincRNA gene predicted gene, 26609
Tssr90069 9 62809852 to 62809861 9 - TSS region transcription start site region 90069
Cpgi21901 9 62810781 to 62812231 1450 CpG island CpG island 21901
Tssr90070 9 62811426 to 62811476 50 - TSS region transcription start site region 90070
Tssr90071 9 62811592 to 62811659 67 - TSS region transcription start site region 90071
Tssr90072 9 62811663 to 62811668 5 - TSS region transcription start site region 90072
Tssr90073 9 62811669 to 62811676 7 - TSS region transcription start site region 90073
Tssr90074 9 62811835 to 62811846 11 - TSS region transcription start site region 90074
Tssr90075 9 62811866 to 62811955 89 - TSS region transcription start site region 90075
Tssr90076 9 62812805 to 62812842 37 - TSS region transcription start site region 90076
Tssr90077 9 62819577 to 62819612 35 - TSS region transcription start site region 90077
Tssr85561 9 62825570 to 62825581 11 + TSS region transcription start site region 85561
Tssr85562 9 62826085 to 62826099 14 + TSS region transcription start site region 85562
Cpgi21902 9 62828713 to 62829037 324 CpG island CpG island 21902
Tssr85563 9 62829095 to 62829121 26 + TSS region transcription start site region 85563
Cpgi21903 9 62838539 to 62839325 786 CpG island CpG island 21903
Tssr85564 9 62838579 to 62838603 24 + TSS region transcription start site region 85564
Tssr85565 9 62838612 to 62838630 18 + TSS region transcription start site region 85565
Tssr85566 9 62838642 to 62838682 40 + TSS region transcription start site region 85566
Tssr85567 9 62838767 to 62838816 49 + TSS region transcription start site region 85567
Cln6 9 62838787 to 62852002 13215 + protein coding gene ceroid-lipofuscinosis, neuronal 6
Tssr85568 9 62838831 to 62838886 55 + TSS region transcription start site region 85568
Gm10653 9 62841477 to 62862024 20547 - pseudogene predicted gene 10653
Tssr85569 9 62844591 to 62844612 21 + TSS region transcription start site region 85569
Tssr85570 9 62846000 to 62846004 4 + TSS region transcription start site region 85570
Tssr2901 9 62846970 to 62846989 19 + TSS region transcription start site region 2901
Tssr85571 9 62851047 to 62851054 7 + TSS region transcription start site region 85571
Tssr85572 9 62851418 to 62851443 25 + TSS region transcription start site region 85572
Tssr85573 9 62851625 to 62851656 31 + TSS region transcription start site region 85573
Gm47274 9 62856066 to 62856462 396 + pseudogene predicted gene, 47274
Cpgi21904 9 62857603 to 62857785 182 CpG island CpG island 21904
Calml4 9 62858080 to 62875921 17841 + protein coding gene calmodulin-like 4
Tssr85574 9 62858085 to 62858138 53 + TSS region transcription start site region 85574
Tssr85575 9 62868640 to 62868649 9 + TSS region transcription start site region 85575
Tssr85576 9 62868652 to 62868703 51 + TSS region transcription start site region 85576
Tssr85577 9 62868704 to 62868715 11 + TSS region transcription start site region 85577
Tssr2902 9 62868732 to 62868733 1 + TSS region transcription start site region 2902
Pias1 9 62878366 to 62980879 102513 - protein coding gene protein inhibitor of activated STAT 1
Tssr90078 9 62886609 to 62886613 4 - TSS region transcription start site region 90078
Cpgi21905 9 62979916 to 62981336 1420 CpG island CpG island 21905
Gm35574 9 62980514 to 63010071 29557 + lncRNA gene predicted gene, 35574
Tssr90079 9 62980874 to 62980902 28 - TSS region transcription start site region 90079
Tssr90080 9 62987893 to 62987898 5 - TSS region transcription start site region 90080
Tssr90081 9 62987915 to 62987941 26 - TSS region transcription start site region 90081
D9Mit317 9 62994284 to 62994417 133 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-317
Gm24526 9 63027560 to 63027717 157 + snRNA gene predicted gene, 24526
Gm39354 9 63028354 to 63034817 6463 + lncRNA gene predicted gene, 39354
Tssr85578 9 63077194 to 63077198 4 + TSS region transcription start site region 85578
Gm48193 9 63080267 to 63082973 2706 - lincRNA gene predicted gene, 48193
Gm35658 9 63093416 to 63108233 14817 + lncRNA gene predicted gene, 35658
Tssr85579 9 63093424 to 63093449 25 + TSS region transcription start site region 85579
Cpgi21906 9 63108982 to 63109479 497 CpG island CpG island 21906
Tssr90082 9 63109309 to 63109338 29 - TSS region transcription start site region 90082
Gm6082 9 63117201 to 63117654 453 + pseudogene predicted gene 6082
Cpgi21907 9 63123905 to 63124400 495 CpG island CpG island 21907
Cpgi21908 9 63132037 to 63133114 1077 CpG island CpG island 21908
Gm25064 9 63133283 to 63133389 106 + snRNA gene predicted gene, 25064
Skor1 9 63138170 to 63148961 10791 - protein coding gene SKI family transcriptional corepressor 1
Cpgi21909 9 63138464 to 63139020 556 CpG island CpG island 21909
Cpgi21910 9 63141876 to 63142852 976 CpG island CpG island 21910
Cpgi21911 9 63143251 to 63147124 3873 CpG island CpG island 21911
Cpgi21912 9 63148339 to 63149796 1457 CpG island CpG island 21912
Tssr2903 9 63148915 to 63148934 19 - TSS region transcription start site region 2903
Tssr90083 9 63149178 to 63149183 5 - TSS region transcription start site region 90083
Cpgi21913 9 63150169 to 63150606 437 CpG island CpG island 21913
Map2k5 9 63163768 to 63377902 214134 - protein coding gene mitogen-activated protein kinase kinase 5
Tssr90084 9 63197359 to 63197395 36 - TSS region transcription start site region 90084
Tssr2904 9 63221016 to 63221020 4 + TSS region transcription start site region 2904
Tssr90085 9 63223147 to 63223163 16 - TSS region transcription start site region 90085
Tssr90086 9 63281224 to 63281240 16 - TSS region transcription start site region 90086
Tssr90087 9 63281260 to 63281271 11 - TSS region transcription start site region 90087
Tssr85580 9 63281325 to 63281360 35 + TSS region transcription start site region 85580
Gm39355 9 63291534 to 63292775 1241 - lncRNA gene predicted gene, 39355
Tssr90088 9 63322789 to 63322814 25 - TSS region transcription start site region 90088
D9Mit105 9 63332429 to 63332570 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 105
Tssr2905 9 63333638 to 63333646 8 + TSS region transcription start site region 2905
Cpgi21914 9 63377267 to 63378139 872 CpG island CpG island 21914
Tssr90089 9 63377624 to 63377766 142 - TSS region transcription start site region 90089
Tssr90090 9 63377814 to 63377829 15 - TSS region transcription start site region 90090
Tssr90091 9 63377835 to 63377914 79 - TSS region transcription start site region 90091
Tssr90092 9 63377960 to 63377980 20 - TSS region transcription start site region 90092
Splq4 9 120362868 to 63332429 -57030439 QTL spleen weight QTL 4
Tailaq2 9 120362868 to 63332429 -57030439 QTL tail length adjusted QTL 2
W10q13 9 120362868 to 63332429 -57030439 QTL weight 10 weeks QTL 13