Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:61965387-62725405

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Paqr5 9 61953738 to 62026790 73052 - protein coding gene progestin and adipoQ receptor family member V
Tssr90023 9 61976563 to 61976576 13 - TSS region transcription start site region 90023
Tssr90024 9 61976577 to 61976597 20 - TSS region transcription start site region 90024
Gm35152 9 61976683 to 61987887 11204 + lncRNA gene predicted gene, 35152
Tssr90025 9 61990723 to 61990729 6 - TSS region transcription start site region 90025
9530006O14Rik 9 62006678 to 62007893 1215 unclassified gene RIKEN cDNA 9530006O14 gene
Gm23221 9 62020594 to 62020686 92 + unclassified non-coding RNA gene predicted gene, 23221
Cpgi21888 9 62026484 to 62027025 541 CpG island CpG island 21888
Tssr90026 9 62026788 to 62026833 45 - TSS region transcription start site region 90026
Tssr2898 9 62026853 to 62026858 5 - TSS region transcription start site region 2898
Cpgi21889 9 62040163 to 62040485 322 CpG island CpG island 21889
Glce 9 62057248 to 62122655 65407 - protein coding gene glucuronyl C5-epimerase
Cpgi21890 9 62121608 to 62123294 1686 CpG island CpG island 21890
Mir5133 9 62122518 to 62122594 76 - miRNA gene microRNA 5133
Tssr90027 9 62122596 to 62122617 21 - TSS region transcription start site region 90027
Tssr90028 9 62122626 to 62122651 25 - TSS region transcription start site region 90028
Tssr90029 9 62122654 to 62122665 11 - TSS region transcription start site region 90029
Tssr90030 9 62122677 to 62122688 11 - TSS region transcription start site region 90030
Tssr85519 9 62122988 to 62122991 3 + TSS region transcription start site region 85519
Gm39351 9 62140661 to 62147824 7163 + lncRNA gene predicted gene, 39351
Gm35227 9 62166790 to 62187605 20815 + lncRNA gene predicted gene, 35227
Gm47262 9 62241670 to 62243997 2327 + lincRNA gene predicted gene, 47262
A730043L09Rik 9 62242596 to 62244100 1504 - lincRNA gene RIKEN cDNA A730043L09 gene
Gm25603 9 62242763 to 62242867 104 - miRNA gene predicted gene, 25603
Cpgi21891 9 62244032 to 62244262 230 CpG island CpG island 21891
D9Mit208 9 62266473 to 62266581 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 208
1700013K18Rik 9 62267375 to 62267842 467 unclassified gene RIKEN cDNA 1700013K18 gene
Spesp1 9 62270729 to 62282179 11450 - protein coding gene sperm equatorial segment protein 1
Cpgi21892 9 62272986 to 62273315 329 CpG island CpG island 21892
Cpgi21893 9 62281901 to 62282343 442 CpG island CpG island 21893
Tssr90031 9 62282136 to 62282143 7 - TSS region transcription start site region 90031
Tssr90032 9 62282145 to 62282154 9 - TSS region transcription start site region 90032
Tssr90033 9 62282158 to 62282163 5 - TSS region transcription start site region 90033
Tssr90034 9 62282165 to 62282217 52 - TSS region transcription start site region 90034
Gm35288 9 62298502 to 62336649 38147 + lincRNA gene predicted gene, 35288
Cpgi21894 9 62340687 to 62344855 4168 CpG island CpG island 21894
Tssr90035 9 62341155 to 62341165 10 - TSS region transcription start site region 90035
Tssr85520 9 62341338 to 62341390 52 + TSS region transcription start site region 85520
Anp32a 9 62341343 to 62378804 37461 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
Tssr85521 9 62341393 to 62341416 23 + TSS region transcription start site region 85521
Tssr85522 9 62341441 to 62341452 11 + TSS region transcription start site region 85522
Gm20346 9 62341502 to 62344600 3098 - protein coding gene predicted gene, 20346
Tssr85523 9 62341893 to 62341926 33 + TSS region transcription start site region 85523
Tssr85524 9 62342059 to 62342082 23 + TSS region transcription start site region 85524
Tssr85525 9 62342089 to 62342112 23 + TSS region transcription start site region 85525
Tssr85526 9 62342121 to 62342145 24 + TSS region transcription start site region 85526
Tssr2899 9 62342338 to 62342359 21 + TSS region transcription start site region 2899
Tssr85527 9 62342449 to 62342473 24 + TSS region transcription start site region 85527
Tssr90036 9 62343272 to 62343310 38 - TSS region transcription start site region 90036
Tssr90037 9 62343566 to 62343599 33 - TSS region transcription start site region 90037
Tssr90038 9 62344018 to 62344058 40 - TSS region transcription start site region 90038
Tssr90039 9 62344639 to 62344668 29 - TSS region transcription start site region 90039
Tssr85528 9 62344755 to 62344771 16 + TSS region transcription start site region 85528
Tssr85529 9 62344783 to 62344799 16 + TSS region transcription start site region 85529
Tssr85530 9 62344873 to 62344910 37 + TSS region transcription start site region 85530
Tssr2900 9 62344903 to 62344908 5 - TSS region transcription start site region 2900
Tssr85531 9 62345357 to 62345367 10 + TSS region transcription start site region 85531
Tssr85532 9 62345387 to 62345405 18 + TSS region transcription start site region 85532
Tssr85533 9 62345423 to 62345442 19 + TSS region transcription start site region 85533
Tssr85534 9 62345446 to 62345453 7 + TSS region transcription start site region 85534
Tssr85535 9 62351166 to 62351170 4 + TSS region transcription start site region 85535
Tssr85536 9 62351459 to 62351460 1 + TSS region transcription start site region 85536
Cpgi21895 9 62363606 to 62363982 376 CpG island CpG island 21895
Tssr85537 9 62366915 to 62366934 19 + TSS region transcription start site region 85537
Tssr85538 9 62366937 to 62366948 11 + TSS region transcription start site region 85538
Tssr85539 9 62367403 to 62367441 38 + TSS region transcription start site region 85539
Tssr85540 9 62367871 to 62367883 12 + TSS region transcription start site region 85540
Tssr85541 9 62367976 to 62368017 41 + TSS region transcription start site region 85541
Tssr85542 9 62368031 to 62368040 9 + TSS region transcription start site region 85542
Tssr85543 9 62368045 to 62368054 9 + TSS region transcription start site region 85543
Tssr85544 9 62373159 to 62373182 23 + TSS region transcription start site region 85544
Tssr85545 9 62373189 to 62373197 8 + TSS region transcription start site region 85545
Tssr85546 9 62373457 to 62373488 31 + TSS region transcription start site region 85546
Tssr85547 9 62373500 to 62373537 37 + TSS region transcription start site region 85547
Tssr85548 9 62373547 to 62373571 24 + TSS region transcription start site region 85548
Tssr85549 9 62373603 to 62373630 27 + TSS region transcription start site region 85549
Tssr85550 9 62373635 to 62373648 13 + TSS region transcription start site region 85550
Tssr85551 9 62374649 to 62374675 26 + TSS region transcription start site region 85551
Tssr90040 9 62374686 to 62374728 42 - TSS region transcription start site region 90040
Tssr85552 9 62377294 to 62377334 40 + TSS region transcription start site region 85552
Tssr90041 9 62377327 to 62377355 28 - TSS region transcription start site region 90041
Tssr90042 9 62377356 to 62377372 16 - TSS region transcription start site region 90042
Tssr90043 9 62377575 to 62377626 51 - TSS region transcription start site region 90043
Gm40522 9 62383759 to 62384904 1145 + lncRNA gene predicted gene, 40522
Tssr85553 9 62389957 to 62389960 3 + TSS region transcription start site region 85553
Tssr85554 9 62409252 to 62409295 43 + TSS region transcription start site region 85554
Gm40523 9 62414337 to 62415667 1330 - lncRNA gene predicted gene, 40523
Cpgi21896 9 62415447 to 62415669 222 CpG island CpG island 21896
Coro2b 9 62419492 to 62537044 117552 - protein coding gene coronin, actin binding protein, 2B
Tssr85555 9 62421309 to 62421326 17 + TSS region transcription start site region 85555
Tssr90044 9 62435771 to 62435777 6 - TSS region transcription start site region 90044
Gm40525 9 62439767 to 62446733 6966 + protein coding gene predicted gene, 40525
Tssr90045 9 62453682 to 62453686 4 - TSS region transcription start site region 90045
Cpgi21897 9 62471668 to 62471855 187 CpG island CpG island 21897
Tssr90046 9 62476602 to 62476606 4 - TSS region transcription start site region 90046
Cpgi21898 9 62488769 to 62489028 259 CpG island CpG island 21898
Tssr90047 9 62497856 to 62497868 12 - TSS region transcription start site region 90047
Tssr90048 9 62510552 to 62510570 18 - TSS region transcription start site region 90048
Tssr90049 9 62510586 to 62510605 19 - TSS region transcription start site region 90049
n-R5s84 9 62515029 to 62515137 108 + rRNA gene nuclear encoded rRNA 5S 84
Cpgi21899 9 62536096 to 62537329 1233 CpG island CpG island 21899
Tssr90050 9 62536747 to 62536767 20 - TSS region transcription start site region 90050
Tssr90051 9 62536770 to 62536832 62 - TSS region transcription start site region 90051
Tssr90052 9 62536900 to 62536911 11 - TSS region transcription start site region 90052
Tssr90053 9 62536946 to 62536951 5 - TSS region transcription start site region 90053
Tssr90054 9 62536967 to 62536986 19 - TSS region transcription start site region 90054
Tssr90055 9 62537005 to 62537016 11 - TSS region transcription start site region 90055
Tssr90056 9 62537036 to 62537061 25 - TSS region transcription start site region 90056
Tssr90057 9 62537335 to 62537354 19 - TSS region transcription start site region 90057
Tssr90058 9 62537371 to 62537380 9 - TSS region transcription start site region 90058
Gm39352 9 62537881 to 62541296 3415 - lncRNA gene predicted gene, 39352
Gm39353 9 62649717 to 62655598 5881 + lncRNA gene predicted gene, 39353
Tssr90059 9 62666028 to 62666043 15 - TSS region transcription start site region 90059
Tssr90060 9 62666046 to 62666062 16 - TSS region transcription start site region 90060
Tssr90061 9 62666063 to 62666069 6 - TSS region transcription start site region 90061
Tssr90062 9 62666070 to 62666077 7 - TSS region transcription start site region 90062
Tssr90063 9 62666081 to 62666088 7 - TSS region transcription start site region 90063
Cpgi21900 9 62677597 to 62678906 1309 CpG island CpG island 21900
Tssr85556 9 62677833 to 62677843 10 + TSS region transcription start site region 85556
Tssr85557 9 62677848 to 62677863 15 + TSS region transcription start site region 85557
Itga11 9 62677855 to 62783979 106124 + protein coding gene integrin alpha 11