Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:60892518-63352594

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301 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Gm47923 9 60919223 to 60949373 30150 + lincRNA gene predicted gene, 47923
Gm5122 9 61017069 to 61019797 2728 + lincRNA gene predicted gene 5122
Gm39348 9 61051399 to 61055873 4474 - lincRNA gene predicted gene, 39348
Gm33699 9 61052172 to 61056923 4751 + lincRNA gene predicted gene, 33699
Tssr85498 9 61054637 to 61054651 14 + TSS region transcription start site region 85498
Cpgi21876 9 61056573 to 61056814 241 CpG island CpG island 21876
Gm46116 9 61056933 to 61059180 2247 + lncRNA gene predicted gene, 46116
D9Mit143 9 61074126 to 61074267 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 143
Cpgi21877 9 61081727 to 61081883 156 CpG island CpG island 21877
Gm34004 9 61081893 to 61116705 34812 + lincRNA gene predicted gene, 34004
D9Mit72 9 61098862 to 61098994 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 72
4933433G08Rik 9 61103012 to 61105385 2373 - lincRNA gene RIKEN cDNA 4933433G08 gene
Tssr90004 9 61105380 to 61105392 12 - TSS region transcription start site region 90004
Gm33914 9 61109619 to 61127031 17412 - lincRNA gene predicted gene, 33914
Tssr85499 9 61110965 to 61110997 32 + TSS region transcription start site region 85499
I730028E13Rik 9 61138515 to 61145259 6744 + lincRNA gene RIKEN cDNA I730028E13 gene
Tssr85500 9 61139186 to 61139207 21 + TSS region transcription start site region 85500
Tssr2895 9 61156918 to 61156937 19 + TSS region transcription start site region 2895
Tssr85501 9 61200379 to 61200381 2 + TSS region transcription start site region 85501
Gm34105 9 61206679 to 61212915 6236 + lincRNA gene predicted gene, 34105
Tssr85502 9 61225604 to 61225622 18 + TSS region transcription start site region 85502
B930092H01Rik 9 61259227 to 61293809 34582 - lincRNA gene RIKEN cDNA B930092H01 gene
Gm34264 9 61312285 to 61328613 16328 - lncRNA gene predicted gene, 34264
Cpgi21878 9 61315716 to 61315968 252 CpG island CpG island 21878
Gm39349 9 61339483 to 61348728 9245 + lncRNA gene predicted gene, 39349
Tssr2896 9 61356042 to 61356045 3 + TSS region transcription start site region 2896
Cpgi21879 9 61369412 to 61369880 468 CpG island CpG island 21879
Gm34157 9 61369678 to 61370490 812 - lncRNA gene predicted gene, 34157
Tssr90005 9 61370479 to 61370528 49 - TSS region transcription start site region 90005
Cpgi21880 9 61370520 to 61371659 1139 CpG island CpG island 21880
Tssr85503 9 61370769 to 61370807 38 + TSS region transcription start site region 85503
Gm10655 9 61370797 to 61372193 1396 - lincRNA gene predicted gene 10655
Cpgi21881 9 61372149 to 61374688 2539 CpG island CpG island 21881
Tssr90006 9 61372187 to 61372211 24 - TSS region transcription start site region 90006
Tssr85504 9 61372309 to 61372320 11 + TSS region transcription start site region 85504
Tssr85505 9 61372359 to 61372383 24 + TSS region transcription start site region 85505
Tle3 9 61372366 to 61418497 46131 + protein coding gene transducin-like enhancer of split 3
Tssr85506 9 61372388 to 61372404 16 + TSS region transcription start site region 85506
Tssr85507 9 61372465 to 61372478 13 + TSS region transcription start site region 85507
Tssr85508 9 61373352 to 61373391 39 + TSS region transcription start site region 85508
Tssr85509 9 61373505 to 61373521 16 + TSS region transcription start site region 85509
Tssr85510 9 61373608 to 61373650 42 + TSS region transcription start site region 85510
Tssr85511 9 61391868 to 61391877 9 + TSS region transcription start site region 85511
Tssr85512 9 61417809 to 61417817 8 + TSS region transcription start site region 85512
Tssr85513 9 61435755 to 61435759 4 + TSS region transcription start site region 85513
Tssr85514 9 61441799 to 61441833 34 + TSS region transcription start site region 85514
Gm34322 9 61442691 to 61455934 13243 + lincRNA gene predicted gene, 34322
Gm47240 9 61472591 to 61472986 395 - pseudogene predicted gene, 47240
Cpgi21882 9 61509662 to 61509915 253 CpG island CpG island 21882
Tssr85515 9 61509713 to 61509733 20 + TSS region transcription start site region 85515
Gm34424 9 61509723 to 61534247 24524 + lncRNA gene predicted gene, 34424
Tssr85516 9 61520595 to 61520598 3 + TSS region transcription start site region 85516
D9Mit163 9 61520892 to 61520980 88 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 163
Trigq1 9 61520892 to 61520980 88 QTL triglyceride QTL 1
D9Mit164 9 61529867 to 61529959 92 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 164
Gm39350 9 61585139 to 61596203 11064 - lncRNA gene predicted gene, 39350
Tssr85517 9 61595400 to 61595423 23 + TSS region transcription start site region 85517
Cpgi21883 9 61626414 to 61626628 214 CpG island CpG island 21883
Tssr90007 9 61635008 to 61635052 44 - TSS region transcription start site region 90007
Gm34770 9 61659973 to 61661375 1402 - lncRNA gene predicted gene, 34770
Tssr90008 9 61694458 to 61694461 3 - TSS region transcription start site region 90008
Gm34828 9 61750387 to 61827185 76798 - lncRNA gene predicted gene, 34828
Cpgi21884 9 61756981 to 61757171 190 CpG island CpG island 21884
Gm47241 9 61763084 to 61763442 358 + pseudogene predicted gene, 47241
Tssr2897 9 61808202 to 61808209 7 + TSS region transcription start site region 2897
Gm19208 9 61851704 to 61852615 911 + pseudogene predicted gene, 19208
Gm34974 9 61860948 to 61898772 37824 - lncRNA gene predicted gene, 34974
D9Mit234 9 61865230 to 61865356 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 234
Gm35058 9 61904481 to 61907874 3393 + lncRNA gene predicted gene, 35058
Rplp1 9 61913283 to 61914510 1227 - protein coding gene ribosomal protein, large, P1
Tssr90009 9 61913423 to 61913473 50 - TSS region transcription start site region 90009
Cpgi21885 9 61913960 to 61914965 1005 CpG island CpG island 21885
Tssr90010 9 61914382 to 61914409 27 - TSS region transcription start site region 90010
Tssr90011 9 61914538 to 61914574 36 - TSS region transcription start site region 90011
Kif23 9 61917277 to 61946813 29536 - protein coding gene kinesin family member 23
Tssr90012 9 61920412 to 61920435 23 - TSS region transcription start site region 90012
Tssr90013 9 61925058 to 61925069 11 - TSS region transcription start site region 90013
Tssr90014 9 61925403 to 61925432 29 - TSS region transcription start site region 90014
Tssr90015 9 61925456 to 61925461 5 - TSS region transcription start site region 90015
Tssr90016 9 61925474 to 61925483 9 - TSS region transcription start site region 90016
Cpgi21886 9 61946123 to 61947074 951 CpG island CpG island 21886
Tssr90017 9 61946693 to 61946698 5 - TSS region transcription start site region 90017
Tssr90018 9 61946730 to 61946744 14 - TSS region transcription start site region 90018
Tssr90019 9 61946754 to 61946765 11 - TSS region transcription start site region 90019
Tssr90020 9 61946768 to 61946779 11 - TSS region transcription start site region 90020
Tssr85518 9 61946979 to 61947023 44 + TSS region transcription start site region 85518
Cpgi21887 9 61947926 to 61948298 372 CpG island CpG island 21887
Paqr5 9 61953738 to 62026790 73052 - protein coding gene progestin and adipoQ receptor family member V
Tssr90021 9 61961617 to 61961651 34 - TSS region transcription start site region 90021
Tssr90022 9 61965152 to 61965166 14 - TSS region transcription start site region 90022
Tssr90023 9 61976563 to 61976576 13 - TSS region transcription start site region 90023
Tssr90024 9 61976577 to 61976597 20 - TSS region transcription start site region 90024
Gm35152 9 61976683 to 61987887 11204 + lncRNA gene predicted gene, 35152
Tssr90025 9 61990723 to 61990729 6 - TSS region transcription start site region 90025
9530006O14Rik 9 62006678 to 62007893 1215 unclassified gene RIKEN cDNA 9530006O14 gene
Gm23221 9 62020594 to 62020686 92 + unclassified non-coding RNA gene predicted gene, 23221
Cpgi21888 9 62026484 to 62027025 541 CpG island CpG island 21888
Tssr90026 9 62026788 to 62026833 45 - TSS region transcription start site region 90026
Tssr2898 9 62026853 to 62026858 5 - TSS region transcription start site region 2898
Cpgi21889 9 62040163 to 62040485 322 CpG island CpG island 21889
Glce 9 62057248 to 62122655 65407 - protein coding gene glucuronyl C5-epimerase
Cpgi21890 9 62121608 to 62123294 1686 CpG island CpG island 21890
Mir5133 9 62122518 to 62122594 76 - miRNA gene microRNA 5133
Tssr90027 9 62122596 to 62122617 21 - TSS region transcription start site region 90027
Tssr90028 9 62122626 to 62122651 25 - TSS region transcription start site region 90028
Tssr90029 9 62122654 to 62122665 11 - TSS region transcription start site region 90029
Tssr90030 9 62122677 to 62122688 11 - TSS region transcription start site region 90030
Tssr85519 9 62122988 to 62122991 3 + TSS region transcription start site region 85519
Gm39351 9 62140661 to 62147824 7163 + lncRNA gene predicted gene, 39351
Gm35227 9 62166790 to 62187605 20815 + lncRNA gene predicted gene, 35227
Gm47262 9 62241670 to 62243997 2327 + lincRNA gene predicted gene, 47262
A730043L09Rik 9 62242596 to 62244100 1504 - lincRNA gene RIKEN cDNA A730043L09 gene
Gm25603 9 62242763 to 62242867 104 - miRNA gene predicted gene, 25603
Cpgi21891 9 62244032 to 62244262 230 CpG island CpG island 21891
D9Mit208 9 62266473 to 62266581 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 208
1700013K18Rik 9 62267375 to 62267842 467 unclassified gene RIKEN cDNA 1700013K18 gene
Spesp1 9 62270729 to 62282179 11450 - protein coding gene sperm equatorial segment protein 1
Cpgi21892 9 62272986 to 62273315 329 CpG island CpG island 21892
Cpgi21893 9 62281901 to 62282343 442 CpG island CpG island 21893
Tssr90031 9 62282136 to 62282143 7 - TSS region transcription start site region 90031
Tssr90032 9 62282145 to 62282154 9 - TSS region transcription start site region 90032
Tssr90033 9 62282158 to 62282163 5 - TSS region transcription start site region 90033
Tssr90034 9 62282165 to 62282217 52 - TSS region transcription start site region 90034
Gm35288 9 62298502 to 62336649 38147 + lincRNA gene predicted gene, 35288
Cpgi21894 9 62340687 to 62344855 4168 CpG island CpG island 21894
Tssr90035 9 62341155 to 62341165 10 - TSS region transcription start site region 90035
Tssr85520 9 62341338 to 62341390 52 + TSS region transcription start site region 85520
Anp32a 9 62341343 to 62378804 37461 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
Tssr85521 9 62341393 to 62341416 23 + TSS region transcription start site region 85521
Tssr85522 9 62341441 to 62341452 11 + TSS region transcription start site region 85522
Gm20346 9 62341502 to 62344600 3098 - protein coding gene predicted gene, 20346
Tssr85523 9 62341893 to 62341926 33 + TSS region transcription start site region 85523
Tssr85524 9 62342059 to 62342082 23 + TSS region transcription start site region 85524
Tssr85525 9 62342089 to 62342112 23 + TSS region transcription start site region 85525
Tssr85526 9 62342121 to 62342145 24 + TSS region transcription start site region 85526
Tssr2899 9 62342338 to 62342359 21 + TSS region transcription start site region 2899
Tssr85527 9 62342449 to 62342473 24 + TSS region transcription start site region 85527
Tssr90036 9 62343272 to 62343310 38 - TSS region transcription start site region 90036
Tssr90037 9 62343566 to 62343599 33 - TSS region transcription start site region 90037
Tssr90038 9 62344018 to 62344058 40 - TSS region transcription start site region 90038
Tssr90039 9 62344639 to 62344668 29 - TSS region transcription start site region 90039
Tssr85528 9 62344755 to 62344771 16 + TSS region transcription start site region 85528
Tssr85529 9 62344783 to 62344799 16 + TSS region transcription start site region 85529
Tssr85530 9 62344873 to 62344910 37 + TSS region transcription start site region 85530
Tssr2900 9 62344903 to 62344908 5 - TSS region transcription start site region 2900
Tssr85531 9 62345357 to 62345367 10 + TSS region transcription start site region 85531
Tssr85532 9 62345387 to 62345405 18 + TSS region transcription start site region 85532
Tssr85533 9 62345423 to 62345442 19 + TSS region transcription start site region 85533
Tssr85534 9 62345446 to 62345453 7 + TSS region transcription start site region 85534
Tssr85535 9 62351166 to 62351170 4 + TSS region transcription start site region 85535
Tssr85536 9 62351459 to 62351460 1 + TSS region transcription start site region 85536
Cpgi21895 9 62363606 to 62363982 376 CpG island CpG island 21895
Tssr85537 9 62366915 to 62366934 19 + TSS region transcription start site region 85537
Tssr85538 9 62366937 to 62366948 11 + TSS region transcription start site region 85538
Tssr85539 9 62367403 to 62367441 38 + TSS region transcription start site region 85539
Tssr85540 9 62367871 to 62367883 12 + TSS region transcription start site region 85540
Tssr85541 9 62367976 to 62368017 41 + TSS region transcription start site region 85541
Tssr85542 9 62368031 to 62368040 9 + TSS region transcription start site region 85542
Tssr85543 9 62368045 to 62368054 9 + TSS region transcription start site region 85543
Tssr85544 9 62373159 to 62373182 23 + TSS region transcription start site region 85544
Tssr85545 9 62373189 to 62373197 8 + TSS region transcription start site region 85545
Tssr85546 9 62373457 to 62373488 31 + TSS region transcription start site region 85546
Tssr85547 9 62373500 to 62373537 37 + TSS region transcription start site region 85547
Tssr85548 9 62373547 to 62373571 24 + TSS region transcription start site region 85548
Tssr85549 9 62373603 to 62373630 27 + TSS region transcription start site region 85549
Tssr85550 9 62373635 to 62373648 13 + TSS region transcription start site region 85550
Tssr85551 9 62374649 to 62374675 26 + TSS region transcription start site region 85551
Tssr90040 9 62374686 to 62374728 42 - TSS region transcription start site region 90040
Tssr85552 9 62377294 to 62377334 40 + TSS region transcription start site region 85552
Tssr90041 9 62377327 to 62377355 28 - TSS region transcription start site region 90041
Tssr90042 9 62377356 to 62377372 16 - TSS region transcription start site region 90042
Tssr90043 9 62377575 to 62377626 51 - TSS region transcription start site region 90043
Gm40522 9 62383759 to 62384904 1145 + lncRNA gene predicted gene, 40522
Tssr85553 9 62389957 to 62389960 3 + TSS region transcription start site region 85553
Tssr85554 9 62409252 to 62409295 43 + TSS region transcription start site region 85554
Gm40523 9 62414337 to 62415667 1330 - lncRNA gene predicted gene, 40523
Cpgi21896 9 62415447 to 62415669 222 CpG island CpG island 21896
Coro2b 9 62419492 to 62537044 117552 - protein coding gene coronin, actin binding protein, 2B
Tssr85555 9 62421309 to 62421326 17 + TSS region transcription start site region 85555
Tssr90044 9 62435771 to 62435777 6 - TSS region transcription start site region 90044
Gm40525 9 62439767 to 62446733 6966 + protein coding gene predicted gene, 40525
Tssr90045 9 62453682 to 62453686 4 - TSS region transcription start site region 90045
Cpgi21897 9 62471668 to 62471855 187 CpG island CpG island 21897
Tssr90046 9 62476602 to 62476606 4 - TSS region transcription start site region 90046
Cpgi21898 9 62488769 to 62489028 259 CpG island CpG island 21898
Tssr90047 9 62497856 to 62497868 12 - TSS region transcription start site region 90047
Tssr90048 9 62510552 to 62510570 18 - TSS region transcription start site region 90048
Tssr90049 9 62510586 to 62510605 19 - TSS region transcription start site region 90049
n-R5s84 9 62515029 to 62515137 108 + rRNA gene nuclear encoded rRNA 5S 84
Cpgi21899 9 62536096 to 62537329 1233 CpG island CpG island 21899
Tssr90050 9 62536747 to 62536767 20 - TSS region transcription start site region 90050
Tssr90051 9 62536770 to 62536832 62 - TSS region transcription start site region 90051
Tssr90052 9 62536900 to 62536911 11 - TSS region transcription start site region 90052
Tssr90053 9 62536946 to 62536951 5 - TSS region transcription start site region 90053
Tssr90054 9 62536967 to 62536986 19 - TSS region transcription start site region 90054
Tssr90055 9 62537005 to 62537016 11 - TSS region transcription start site region 90055
Tssr90056 9 62537036 to 62537061 25 - TSS region transcription start site region 90056
Tssr90057 9 62537335 to 62537354 19 - TSS region transcription start site region 90057