Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:60675965-61545997

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc49 9 60587224 to 60688322 101098 - protein coding gene leucine rich repeat containing 49
Tssr89997 9 60680975 to 60680979 4 - TSS region transcription start site region 89997
Tssr2894 9 60687443 to 60687452 9 - TSS region transcription start site region 2894
Tssr89998 9 60687459 to 60687485 26 - TSS region transcription start site region 89998
B930082K07Rik 9 60687719 to 60690397 2678 + lincRNA gene RIKEN cDNA B930082K07 gene
Cpgi21871 9 60687803 to 60688158 355 CpG island CpG island 21871
Tssr89999 9 60687877 to 60687946 69 - TSS region transcription start site region 89999
Tssr90000 9 60687959 to 60687974 15 - TSS region transcription start site region 90000
Tssr90001 9 60688034 to 60688053 19 - TSS region transcription start site region 90001
Tssr90002 9 60688065 to 60688082 17 - TSS region transcription start site region 90002
Tssr90003 9 60688128 to 60688184 56 - TSS region transcription start site region 90003
Cpgi21872 9 60712672 to 60713829 1157 CpG island CpG island 21872
Tssr85487 9 60713105 to 60713159 54 + TSS region transcription start site region 85487
Larp6 9 60713121 to 60738801 25680 + protein coding gene La ribonucleoprotein domain family, member 6
Cpgi21873 9 60737628 to 60737863 235 CpG island CpG island 21873
Cpgi21874 9 60743309 to 60743519 210 CpG island CpG island 21874
1700036A12Rik 9 60767909 to 60770276 2367 + lincRNA gene RIKEN cDNA 1700036A12 gene
Cpgi21875 9 60794274 to 60795267 993 CpG island CpG island 21875
Tssr85488 9 60794468 to 60794577 109 + TSS region transcription start site region 85488
Uaca 9 60794542 to 60880370 85828 + protein coding gene uveal autoantigen with coiled-coil domains and ankyrin repeats
Tssr85489 9 60813670 to 60813705 35 + TSS region transcription start site region 85489
Gm9869 9 60821552 to 60838200 16648 - antisense lncRNA gene predicted gene 9869
Tssr85490 9 60837580 to 60837599 19 + TSS region transcription start site region 85490
Tssr85491 9 60837696 to 60837755 59 + TSS region transcription start site region 85491
Tssr85492 9 60837864 to 60837898 34 + TSS region transcription start site region 85492
Tssr85493 9 60837902 to 60837914 12 + TSS region transcription start site region 85493
Tssr85494 9 60838060 to 60838073 13 + TSS region transcription start site region 85494
Tssr85495 9 60840721 to 60840735 14 + TSS region transcription start site region 85495
Gm33643 9 60864683 to 60869568 4885 - lncRNA gene predicted gene, 33643
Tssr85496 9 60866113 to 60866164 51 + TSS region transcription start site region 85496
Tssr85497 9 60885890 to 60885894 4 + TSS region transcription start site region 85497
Gm47923 9 60919223 to 60949373 30150 + lincRNA gene predicted gene, 47923
Gm5122 9 61017069 to 61019797 2728 + lincRNA gene predicted gene 5122
Gm39348 9 61051399 to 61055873 4474 - lincRNA gene predicted gene, 39348
Gm33699 9 61052172 to 61056923 4751 + lincRNA gene predicted gene, 33699
Tssr85498 9 61054637 to 61054651 14 + TSS region transcription start site region 85498
Cpgi21876 9 61056573 to 61056814 241 CpG island CpG island 21876
Gm46116 9 61056933 to 61059180 2247 + lncRNA gene predicted gene, 46116
D9Mit143 9 61074126 to 61074267 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 143
Cpgi21877 9 61081727 to 61081883 156 CpG island CpG island 21877
Gm34004 9 61081893 to 61116705 34812 + lincRNA gene predicted gene, 34004
D9Mit72 9 61098862 to 61098994 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 72
4933433G08Rik 9 61103012 to 61105385 2373 - lincRNA gene RIKEN cDNA 4933433G08 gene
Tssr90004 9 61105380 to 61105392 12 - TSS region transcription start site region 90004
Gm33914 9 61109619 to 61127031 17412 - lincRNA gene predicted gene, 33914
Tssr85499 9 61110965 to 61110997 32 + TSS region transcription start site region 85499
I730028E13Rik 9 61138515 to 61145259 6744 + lincRNA gene RIKEN cDNA I730028E13 gene
Tssr85500 9 61139186 to 61139207 21 + TSS region transcription start site region 85500
Tssr2895 9 61156918 to 61156937 19 + TSS region transcription start site region 2895
Tssr85501 9 61200379 to 61200381 2 + TSS region transcription start site region 85501
Gm34105 9 61206679 to 61212915 6236 + lincRNA gene predicted gene, 34105
Tssr85502 9 61225604 to 61225622 18 + TSS region transcription start site region 85502
B930092H01Rik 9 61259227 to 61293809 34582 - lincRNA gene RIKEN cDNA B930092H01 gene
Gm34264 9 61312285 to 61328613 16328 - lncRNA gene predicted gene, 34264
Cpgi21878 9 61315716 to 61315968 252 CpG island CpG island 21878
Gm39349 9 61339483 to 61348728 9245 + lncRNA gene predicted gene, 39349
Tssr2896 9 61356042 to 61356045 3 + TSS region transcription start site region 2896
Cpgi21879 9 61369412 to 61369880 468 CpG island CpG island 21879
Gm34157 9 61369678 to 61370490 812 - lncRNA gene predicted gene, 34157
Tssr90005 9 61370479 to 61370528 49 - TSS region transcription start site region 90005
Cpgi21880 9 61370520 to 61371659 1139 CpG island CpG island 21880
Tssr85503 9 61370769 to 61370807 38 + TSS region transcription start site region 85503
Gm10655 9 61370797 to 61372193 1396 - lincRNA gene predicted gene 10655
Cpgi21881 9 61372149 to 61374688 2539 CpG island CpG island 21881
Tssr90006 9 61372187 to 61372211 24 - TSS region transcription start site region 90006
Tssr85504 9 61372309 to 61372320 11 + TSS region transcription start site region 85504
Tssr85505 9 61372359 to 61372383 24 + TSS region transcription start site region 85505
Tle3 9 61372366 to 61418497 46131 + protein coding gene transducin-like enhancer of split 3
Tssr85506 9 61372388 to 61372404 16 + TSS region transcription start site region 85506
Tssr85507 9 61372465 to 61372478 13 + TSS region transcription start site region 85507
Tssr85508 9 61373352 to 61373391 39 + TSS region transcription start site region 85508
Tssr85509 9 61373505 to 61373521 16 + TSS region transcription start site region 85509
Tssr85510 9 61373608 to 61373650 42 + TSS region transcription start site region 85510
Tssr85511 9 61391868 to 61391877 9 + TSS region transcription start site region 85511
Tssr85512 9 61417809 to 61417817 8 + TSS region transcription start site region 85512
Tssr85513 9 61435755 to 61435759 4 + TSS region transcription start site region 85513
Tssr85514 9 61441799 to 61441833 34 + TSS region transcription start site region 85514
Gm34322 9 61442691 to 61455934 13243 + lincRNA gene predicted gene, 34322
Gm47240 9 61472591 to 61472986 395 - pseudogene predicted gene, 47240
Cpgi21882 9 61509662 to 61509915 253 CpG island CpG island 21882
Tssr85515 9 61509713 to 61509733 20 + TSS region transcription start site region 85515
Gm34424 9 61509723 to 61534247 24524 + lncRNA gene predicted gene, 34424
Tssr85516 9 61520595 to 61520598 3 + TSS region transcription start site region 85516
D9Mit163 9 61520892 to 61520980 88 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 163
Trigq1 9 61520892 to 61520980 88 QTL triglyceride QTL 1
D9Mit164 9 61529867 to 61529959 92 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 164