Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:60314267-60674414

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
Thsd4 9 59966931 to 60522046 555115 - protein coding gene thrombospondin, type I, domain containing 4
Tssr85481 9 60334087 to 60334125 38 + TSS region transcription start site region 85481
2010001M07Rik 9 60334142 to 60334968 826 + antisense lncRNA gene RIKEN cDNA 2010001M07 gene
Tssr85482 9 60334186 to 60334195 9 + TSS region transcription start site region 85482
Gm47676 9 60391793 to 60393757 1964 - unclassified gene predicted gene, 47676
Gm22099 9 60419863 to 60419985 122 + snoRNA gene predicted gene, 22099
Tssr89983 9 60449670 to 60449689 19 - TSS region transcription start site region 89983
Tssr89984 9 60449696 to 60449705 9 - TSS region transcription start site region 89984
Tssr85483 9 60482359 to 60482386 27 + TSS region transcription start site region 85483
Tssr85484 9 60482728 to 60482738 10 + TSS region transcription start site region 85484
D9Mit103 9 60494267 to 60494414 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 103
Tssr89985 9 60511003 to 60511016 13 - TSS region transcription start site region 89985
Cpgi21870 9 60521430 to 60522472 1042 CpG island CpG island 21870
Tssr89986 9 60521989 to 60522005 16 - TSS region transcription start site region 89986
Tssr89987 9 60522017 to 60522058 41 - TSS region transcription start site region 89987
Tssr89988 9 60522075 to 60522082 7 - TSS region transcription start site region 89988
9230112J17Rik 9 60523967 to 60545882 21915 - lincRNA gene RIKEN cDNA 9230112J17 gene
Tssr85485 9 60527241 to 60527250 9 + TSS region transcription start site region 85485
Gm49334 9 60527419 to 60546035 18616 + lincRNA gene predicted gene, 49334
Gm47740 9 60535660 to 60536254 594 + pseudogene predicted gene, 47740
Gm33406 9 60543279 to 60549771 6492 + lncRNA gene predicted gene, 33406
Tssr89989 9 60545844 to 60545869 25 - TSS region transcription start site region 89989
Gm17853 9 60548195 to 60549543 1348 + pseudogene predicted gene, 17853
Heal28 9 60573431 to 60573577 146 QTL wound healing/regeneration 28
Stheal8 9 60573431 to 60573577 146 QTL soft tissue heal 8
D9Mit207 9 60573431 to 60573577 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 207
Lrrc49 9 60587224 to 60688322 101098 - protein coding gene leucine rich repeat containing 49
Tssr2893 9 60597854 to 60597857 3 + TSS region transcription start site region 2893
Tssr89990 9 60598930 to 60598942 12 - TSS region transcription start site region 89990
Tssr89991 9 60649674 to 60649677 3 - TSS region transcription start site region 89991
Tssr89992 9 60649686 to 60649740 54 - TSS region transcription start site region 89992
Tssr89993 9 60649743 to 60649745 2 - TSS region transcription start site region 89993
Tssr89994 9 60649749 to 60649790 41 - TSS region transcription start site region 89994
Tssr89995 9 60649793 to 60649805 12 - TSS region transcription start site region 89995
Tssr89996 9 60649867 to 60649878 11 - TSS region transcription start site region 89996
Tssr85486 9 60671960 to 60671965 5 + TSS region transcription start site region 85486