Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:60208416-65993233

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848 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
Feml2 9 57600000 to 63300000 5700000 QTL femur length in high growth mice 2
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Thsd4 9 59966931 to 60522046 555115 - protein coding gene thrombospondin, type I, domain containing 4
5930427L02Rik 9 60243076 to 60245272 2196 unclassified gene RIKEN cDNA 5930427L02 gene
Cpgi21869 9 60289108 to 60289305 197 CpG island CpG island 21869
D9Mit194 9 60306987 to 60307122 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 194
Tssr85481 9 60334087 to 60334125 38 + TSS region transcription start site region 85481
2010001M07Rik 9 60334142 to 60334968 826 + antisense lncRNA gene RIKEN cDNA 2010001M07 gene
Tssr85482 9 60334186 to 60334195 9 + TSS region transcription start site region 85482
Gm47676 9 60391793 to 60393757 1964 - unclassified gene predicted gene, 47676
Gm22099 9 60419863 to 60419985 122 + snoRNA gene predicted gene, 22099
Tssr89983 9 60449670 to 60449689 19 - TSS region transcription start site region 89983
Tssr89984 9 60449696 to 60449705 9 - TSS region transcription start site region 89984
Tssr85483 9 60482359 to 60482386 27 + TSS region transcription start site region 85483
Tssr85484 9 60482728 to 60482738 10 + TSS region transcription start site region 85484
D9Mit103 9 60494267 to 60494414 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 103
Tssr89985 9 60511003 to 60511016 13 - TSS region transcription start site region 89985
Cpgi21870 9 60521430 to 60522472 1042 CpG island CpG island 21870
Tssr89986 9 60521989 to 60522005 16 - TSS region transcription start site region 89986
Tssr89987 9 60522017 to 60522058 41 - TSS region transcription start site region 89987
Tssr89988 9 60522075 to 60522082 7 - TSS region transcription start site region 89988
9230112J17Rik 9 60523967 to 60545882 21915 - lincRNA gene RIKEN cDNA 9230112J17 gene
Tssr85485 9 60527241 to 60527250 9 + TSS region transcription start site region 85485
Gm49334 9 60527419 to 60546035 18616 + lincRNA gene predicted gene, 49334
Gm47740 9 60535660 to 60536254 594 + pseudogene predicted gene, 47740
Gm33406 9 60543279 to 60549771 6492 + lncRNA gene predicted gene, 33406
Tssr89989 9 60545844 to 60545869 25 - TSS region transcription start site region 89989
Gm17853 9 60548195 to 60549543 1348 + pseudogene predicted gene, 17853
D9Mit207 9 60573431 to 60573577 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 207
Heal28 9 60573431 to 60573577 146 QTL wound healing/regeneration 28
Stheal8 9 60573431 to 60573577 146 QTL soft tissue heal 8
Lrrc49 9 60587224 to 60688322 101098 - protein coding gene leucine rich repeat containing 49
Tssr2893 9 60597854 to 60597857 3 + TSS region transcription start site region 2893
Tssr89990 9 60598930 to 60598942 12 - TSS region transcription start site region 89990
Tssr89991 9 60649674 to 60649677 3 - TSS region transcription start site region 89991
Tssr89992 9 60649686 to 60649740 54 - TSS region transcription start site region 89992
Tssr89993 9 60649743 to 60649745 2 - TSS region transcription start site region 89993
Tssr89994 9 60649749 to 60649790 41 - TSS region transcription start site region 89994
Tssr89995 9 60649793 to 60649805 12 - TSS region transcription start site region 89995
Tssr89996 9 60649867 to 60649878 11 - TSS region transcription start site region 89996
Tssr85486 9 60671960 to 60671965 5 + TSS region transcription start site region 85486
Tssr89997 9 60680975 to 60680979 4 - TSS region transcription start site region 89997
Tssr2894 9 60687443 to 60687452 9 - TSS region transcription start site region 2894
Tssr89998 9 60687459 to 60687485 26 - TSS region transcription start site region 89998
B930082K07Rik 9 60687719 to 60690397 2678 + lincRNA gene RIKEN cDNA B930082K07 gene
Cpgi21871 9 60687803 to 60688158 355 CpG island CpG island 21871
Tssr89999 9 60687877 to 60687946 69 - TSS region transcription start site region 89999
Tssr90000 9 60687959 to 60687974 15 - TSS region transcription start site region 90000
Tssr90001 9 60688034 to 60688053 19 - TSS region transcription start site region 90001
Tssr90002 9 60688065 to 60688082 17 - TSS region transcription start site region 90002
Tssr90003 9 60688128 to 60688184 56 - TSS region transcription start site region 90003
Cpgi21872 9 60712672 to 60713829 1157 CpG island CpG island 21872
Tssr85487 9 60713105 to 60713159 54 + TSS region transcription start site region 85487
Larp6 9 60713121 to 60738801 25680 + protein coding gene La ribonucleoprotein domain family, member 6
Cpgi21873 9 60737628 to 60737863 235 CpG island CpG island 21873
Cpgi21874 9 60743309 to 60743519 210 CpG island CpG island 21874
1700036A12Rik 9 60767909 to 60770276 2367 + lincRNA gene RIKEN cDNA 1700036A12 gene
Cpgi21875 9 60794274 to 60795267 993 CpG island CpG island 21875
Tssr85488 9 60794468 to 60794577 109 + TSS region transcription start site region 85488
Uaca 9 60794542 to 60880370 85828 + protein coding gene uveal autoantigen with coiled-coil domains and ankyrin repeats
Tssr85489 9 60813670 to 60813705 35 + TSS region transcription start site region 85489
Gm9869 9 60821552 to 60838200 16648 - antisense lncRNA gene predicted gene 9869
Tssr85490 9 60837580 to 60837599 19 + TSS region transcription start site region 85490
Tssr85491 9 60837696 to 60837755 59 + TSS region transcription start site region 85491
Tssr85492 9 60837864 to 60837898 34 + TSS region transcription start site region 85492
Tssr85493 9 60837902 to 60837914 12 + TSS region transcription start site region 85493
Tssr85494 9 60838060 to 60838073 13 + TSS region transcription start site region 85494
Tssr85495 9 60840721 to 60840735 14 + TSS region transcription start site region 85495
Gm33643 9 60864683 to 60869568 4885 - lncRNA gene predicted gene, 33643
Tssr85496 9 60866113 to 60866164 51 + TSS region transcription start site region 85496
Tssr85497 9 60885890 to 60885894 4 + TSS region transcription start site region 85497
Gm47923 9 60919223 to 60949373 30150 + lincRNA gene predicted gene, 47923
Gm5122 9 61017069 to 61019797 2728 + lincRNA gene predicted gene 5122
Gm39348 9 61051399 to 61055873 4474 - lincRNA gene predicted gene, 39348
Gm33699 9 61052172 to 61056923 4751 + lincRNA gene predicted gene, 33699
Tssr85498 9 61054637 to 61054651 14 + TSS region transcription start site region 85498
Cpgi21876 9 61056573 to 61056814 241 CpG island CpG island 21876
Gm46116 9 61056933 to 61059180 2247 + lncRNA gene predicted gene, 46116
D9Mit143 9 61074126 to 61074267 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 143
Cpgi21877 9 61081727 to 61081883 156 CpG island CpG island 21877
Gm34004 9 61081893 to 61116705 34812 + lincRNA gene predicted gene, 34004
D9Mit72 9 61098862 to 61098994 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 72
4933433G08Rik 9 61103012 to 61105385 2373 - lincRNA gene RIKEN cDNA 4933433G08 gene
Tssr90004 9 61105380 to 61105392 12 - TSS region transcription start site region 90004
Gm33914 9 61109619 to 61127031 17412 - lincRNA gene predicted gene, 33914
Tssr85499 9 61110965 to 61110997 32 + TSS region transcription start site region 85499
I730028E13Rik 9 61138515 to 61145259 6744 + lincRNA gene RIKEN cDNA I730028E13 gene
Tssr85500 9 61139186 to 61139207 21 + TSS region transcription start site region 85500
Tssr2895 9 61156918 to 61156937 19 + TSS region transcription start site region 2895
Tssr85501 9 61200379 to 61200381 2 + TSS region transcription start site region 85501
Gm34105 9 61206679 to 61212915 6236 + lincRNA gene predicted gene, 34105
Tssr85502 9 61225604 to 61225622 18 + TSS region transcription start site region 85502
B930092H01Rik 9 61259227 to 61293809 34582 - lincRNA gene RIKEN cDNA B930092H01 gene
Gm34264 9 61312285 to 61328613 16328 - lncRNA gene predicted gene, 34264
Cpgi21878 9 61315716 to 61315968 252 CpG island CpG island 21878
Gm39349 9 61339483 to 61348728 9245 + lncRNA gene predicted gene, 39349
Tssr2896 9 61356042 to 61356045 3 + TSS region transcription start site region 2896
Cpgi21879 9 61369412 to 61369880 468 CpG island CpG island 21879
Gm34157 9 61369678 to 61370490 812 - lncRNA gene predicted gene, 34157
Tssr90005 9 61370479 to 61370528 49 - TSS region transcription start site region 90005
Cpgi21880 9 61370520 to 61371659 1139 CpG island CpG island 21880
Tssr85503 9 61370769 to 61370807 38 + TSS region transcription start site region 85503
Gm10655 9 61370797 to 61372193 1396 - lincRNA gene predicted gene 10655
Cpgi21881 9 61372149 to 61374688 2539 CpG island CpG island 21881
Tssr90006 9 61372187 to 61372211 24 - TSS region transcription start site region 90006
Tssr85504 9 61372309 to 61372320 11 + TSS region transcription start site region 85504
Tssr85505 9 61372359 to 61372383 24 + TSS region transcription start site region 85505
Tle3 9 61372366 to 61418497 46131 + protein coding gene transducin-like enhancer of split 3
Tssr85506 9 61372388 to 61372404 16 + TSS region transcription start site region 85506
Tssr85507 9 61372465 to 61372478 13 + TSS region transcription start site region 85507
Tssr85508 9 61373352 to 61373391 39 + TSS region transcription start site region 85508
Tssr85509 9 61373505 to 61373521 16 + TSS region transcription start site region 85509
Tssr85510 9 61373608 to 61373650 42 + TSS region transcription start site region 85510
Tssr85511 9 61391868 to 61391877 9 + TSS region transcription start site region 85511
Tssr85512 9 61417809 to 61417817 8 + TSS region transcription start site region 85512
Tssr85513 9 61435755 to 61435759 4 + TSS region transcription start site region 85513
Tssr85514 9 61441799 to 61441833 34 + TSS region transcription start site region 85514
Gm34322 9 61442691 to 61455934 13243 + lincRNA gene predicted gene, 34322
Gm47240 9 61472591 to 61472986 395 - pseudogene predicted gene, 47240
Cpgi21882 9 61509662 to 61509915 253 CpG island CpG island 21882
Tssr85515 9 61509713 to 61509733 20 + TSS region transcription start site region 85515
Gm34424 9 61509723 to 61534247 24524 + lncRNA gene predicted gene, 34424
Tssr85516 9 61520595 to 61520598 3 + TSS region transcription start site region 85516
D9Mit163 9 61520892 to 61520980 88 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 163
Trigq1 9 61520892 to 61520980 88 QTL triglyceride QTL 1
D9Mit164 9 61529867 to 61529959 92 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 164
Gm39350 9 61585139 to 61596203 11064 - lncRNA gene predicted gene, 39350
Tssr85517 9 61595400 to 61595423 23 + TSS region transcription start site region 85517
Cpgi21883 9 61626414 to 61626628 214 CpG island CpG island 21883
Tssr90007 9 61635008 to 61635052 44 - TSS region transcription start site region 90007
Gm34770 9 61659973 to 61661375 1402 - lncRNA gene predicted gene, 34770
Tssr90008 9 61694458 to 61694461 3 - TSS region transcription start site region 90008
Gm34828 9 61750387 to 61827185 76798 - lncRNA gene predicted gene, 34828
Cpgi21884 9 61756981 to 61757171 190 CpG island CpG island 21884
Gm47241 9 61763084 to 61763442 358 + pseudogene predicted gene, 47241
Tssr2897 9 61808202 to 61808209 7 + TSS region transcription start site region 2897
Gm19208 9 61851704 to 61852615 911 + pseudogene predicted gene, 19208
Gm34974 9 61860948 to 61898772 37824 - lncRNA gene predicted gene, 34974
D9Mit234 9 61865230 to 61865356 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 234
Gm35058 9 61904481 to 61907874 3393 + lncRNA gene predicted gene, 35058
Rplp1 9 61913283 to 61914510 1227 - protein coding gene ribosomal protein, large, P1
Tssr90009 9 61913423 to 61913473 50 - TSS region transcription start site region 90009
Cpgi21885 9 61913960 to 61914965 1005 CpG island CpG island 21885
Tssr90010 9 61914382 to 61914409 27 - TSS region transcription start site region 90010
Tssr90011 9 61914538 to 61914574 36 - TSS region transcription start site region 90011
Kif23 9 61917277 to 61946813 29536 - protein coding gene kinesin family member 23
Tssr90012 9 61920412 to 61920435 23 - TSS region transcription start site region 90012
Tssr90013 9 61925058 to 61925069 11 - TSS region transcription start site region 90013
Tssr90014 9 61925403 to 61925432 29 - TSS region transcription start site region 90014
Tssr90015 9 61925456 to 61925461 5 - TSS region transcription start site region 90015
Tssr90016 9 61925474 to 61925483 9 - TSS region transcription start site region 90016
Cpgi21886 9 61946123 to 61947074 951 CpG island CpG island 21886
Tssr90017 9 61946693 to 61946698 5 - TSS region transcription start site region 90017
Tssr90018 9 61946730 to 61946744 14 - TSS region transcription start site region 90018
Tssr90019 9 61946754 to 61946765 11 - TSS region transcription start site region 90019
Tssr90020 9 61946768 to 61946779 11 - TSS region transcription start site region 90020
Tssr85518 9 61946979 to 61947023 44 + TSS region transcription start site region 85518
Cpgi21887 9 61947926 to 61948298 372 CpG island CpG island 21887
Paqr5 9 61953738 to 62026790 73052 - protein coding gene progestin and adipoQ receptor family member V
Tssr90021 9 61961617 to 61961651 34 - TSS region transcription start site region 90021
Tssr90022 9 61965152 to 61965166 14 - TSS region transcription start site region 90022
Tssr90023 9 61976563 to 61976576 13 - TSS region transcription start site region 90023
Tssr90024 9 61976577 to 61976597 20 - TSS region transcription start site region 90024
Gm35152 9 61976683 to 61987887 11204 + lncRNA gene predicted gene, 35152
Tssr90025 9 61990723 to 61990729 6 - TSS region transcription start site region 90025
9530006O14Rik 9 62006678 to 62007893 1215 unclassified gene RIKEN cDNA 9530006O14 gene
Gm23221 9 62020594 to 62020686 92 + unclassified non-coding RNA gene predicted gene, 23221
Cpgi21888 9 62026484 to 62027025 541 CpG island CpG island 21888
Tssr90026 9 62026788 to 62026833 45 - TSS region transcription start site region 90026
Tssr2898 9 62026853 to 62026858 5 - TSS region transcription start site region 2898
Cpgi21889 9 62040163 to 62040485 322 CpG island CpG island 21889
Glce 9 62057248 to 62122655 65407 - protein coding gene glucuronyl C5-epimerase
Cpgi21890 9 62121608 to 62123294 1686 CpG island CpG island 21890
Mir5133 9 62122518 to 62122594 76 - miRNA gene microRNA 5133
Tssr90027 9 62122596 to 62122617 21 - TSS region transcription start site region 90027
Tssr90028 9 62122626 to 62122651 25 - TSS region transcription start site region 90028
Tssr90029 9 62122654 to 62122665 11 - TSS region transcription start site region 90029
Tssr90030 9 62122677 to 62122688 11 - TSS region transcription start site region 90030
Tssr85519 9 62122988 to 62122991 3 + TSS region transcription start site region 85519
Gm39351 9 62140661 to 62147824 7163 + lncRNA gene predicted gene, 39351
Gm35227 9 62166790 to 62187605 20815 + lncRNA gene predicted gene, 35227
Gm47262 9 62241670 to 62243997 2327 + lincRNA gene predicted gene, 47262
A730043L09Rik 9 62242596 to 62244100 1504 - lincRNA gene RIKEN cDNA A730043L09 gene
Gm25603 9 62242763 to 62242867 104 - miRNA gene predicted gene, 25603
Cpgi21891 9 62244032 to 62244262 230 CpG island CpG island 21891
D9Mit208 9 62266473 to 62266581 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 208
1700013K18Rik 9 62267375 to 62267842 467 unclassified gene RIKEN cDNA 1700013K18 gene
Spesp1 9 62270729 to 62282179 11450 - protein coding gene sperm equatorial segment protein 1
Cpgi21892 9 62272986 to 62273315 329 CpG island CpG island 21892
Cpgi21893 9 62281901 to 62282343 442 CpG island CpG island 21893
Tssr90031 9 62282136 to 62282143 7 - TSS region transcription start site region 90031
Tssr90032 9 62282145 to 62282154 9 - TSS region transcription start site region 90032
Tssr90033 9 62282158 to 62282163 5 - TSS region transcription start site region 90033
Tssr90034 9 62282165 to 62282217 52 - TSS region transcription start site region 90034
Gm35288 9 62298502 to 62336649 38147 + lincRNA gene predicted gene, 35288
Cpgi21894 9 62340687 to 62344855 4168 CpG island CpG island 21894
Tssr90035 9 62341155 to 62341165 10 - TSS region transcription start site region 90035