Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:59899743-61399745

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
Myo9a 9 59750896 to 59928866 177970 + protein coding gene myosin IXa
Gm20275 9 59827124 to 59941086 113962 - antisense lncRNA gene predicted gene, 20275
Tssr89962 9 59941004 to 59941013 9 - TSS region transcription start site region 89962
Tssr89963 9 59941021 to 59941045 24 - TSS region transcription start site region 89963
Tssr89964 9 59941053 to 59941075 22 - TSS region transcription start site region 89964
Tssr85477 9 59942075 to 59942095 20 + TSS region transcription start site region 85477
Tssr85478 9 59942108 to 59942138 30 + TSS region transcription start site region 85478
Tssr85479 9 59942194 to 59942204 10 + TSS region transcription start site region 85479
Nr2e3 9 59942771 to 59960659 17888 - protein coding gene nuclear receptor subfamily 2, group E, member 3
Tssr89965 9 59948463 to 59948487 24 - TSS region transcription start site region 89965
Tssr89966 9 59948523 to 59948543 20 - TSS region transcription start site region 89966
Tssr89967 9 59948565 to 59948576 11 - TSS region transcription start site region 89967
Tssr89968 9 59949281 to 59949294 13 - TSS region transcription start site region 89968
Tssr89969 9 59949326 to 59949338 12 - TSS region transcription start site region 89969
Tssr89970 9 59949696 to 59949706 10 - TSS region transcription start site region 89970
Tssr89971 9 59949718 to 59949731 13 - TSS region transcription start site region 89971
Tssr89972 9 59950040 to 59950051 11 - TSS region transcription start site region 89972
Tssr89973 9 59950068 to 59950122 54 - TSS region transcription start site region 89973
Tssr85480 9 59951290 to 59951302 12 + TSS region transcription start site region 85480
Gm7616 9 59951294 to 59959044 7750 + antisense lncRNA gene predicted gene 7616
Gm15507 9 59957511 to 59961801 4290 - lincRNA gene predicted gene 15507
Thsd4 9 59966931 to 60522046 555115 - protein coding gene thrombospondin, type I, domain containing 4
Tssr89974 9 60024560 to 60024596 36 - TSS region transcription start site region 89974
Gm23668 9 60042069 to 60042179 110 - rRNA gene predicted gene, 23668
Tssr89975 9 60063029 to 60063031 2 - TSS region transcription start site region 89975
Tssr89976 9 60134711 to 60134728 17 - TSS region transcription start site region 89976
Tssr89977 9 60134817 to 60134833 16 - TSS region transcription start site region 89977
Tssr89978 9 60141118 to 60141140 22 - TSS region transcription start site region 89978
Tssr89979 9 60141208 to 60141217 9 - TSS region transcription start site region 89979
Tssr89980 9 60141224 to 60141246 22 - TSS region transcription start site region 89980
B930001P03Rik 9 60153315 to 60155244 1929 unclassified gene RIKEN cDNA B930001P03 gene
Tssr89981 9 60193690 to 60193702 12 - TSS region transcription start site region 89981
Tssr89982 9 60193703 to 60193718 15 - TSS region transcription start site region 89982
5930427L02Rik 9 60243076 to 60245272 2196 unclassified gene RIKEN cDNA 5930427L02 gene
Cpgi21869 9 60289108 to 60289305 197 CpG island CpG island 21869
D9Mit194 9 60306987 to 60307122 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 194
Tssr85481 9 60334087 to 60334125 38 + TSS region transcription start site region 85481
2010001M07Rik 9 60334142 to 60334968 826 + antisense lncRNA gene RIKEN cDNA 2010001M07 gene
Tssr85482 9 60334186 to 60334195 9 + TSS region transcription start site region 85482
Gm47676 9 60391793 to 60393757 1964 - unclassified gene predicted gene, 47676
Gm22099 9 60419863 to 60419985 122 + snoRNA gene predicted gene, 22099
Tssr89983 9 60449670 to 60449689 19 - TSS region transcription start site region 89983
Tssr89984 9 60449696 to 60449705 9 - TSS region transcription start site region 89984
Tssr85483 9 60482359 to 60482386 27 + TSS region transcription start site region 85483
Tssr85484 9 60482728 to 60482738 10 + TSS region transcription start site region 85484
D9Mit103 9 60494267 to 60494414 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 103
Tssr89985 9 60511003 to 60511016 13 - TSS region transcription start site region 89985
Cpgi21870 9 60521430 to 60522472 1042 CpG island CpG island 21870
Tssr89986 9 60521989 to 60522005 16 - TSS region transcription start site region 89986
Tssr89987 9 60522017 to 60522058 41 - TSS region transcription start site region 89987
Tssr89988 9 60522075 to 60522082 7 - TSS region transcription start site region 89988
9230112J17Rik 9 60523967 to 60545882 21915 - lincRNA gene RIKEN cDNA 9230112J17 gene
Tssr85485 9 60527241 to 60527250 9 + TSS region transcription start site region 85485
Gm49334 9 60527419 to 60546035 18616 + lincRNA gene predicted gene, 49334
Gm47740 9 60535660 to 60536254 594 + pseudogene predicted gene, 47740
Gm33406 9 60543279 to 60549771 6492 + lncRNA gene predicted gene, 33406
Tssr89989 9 60545844 to 60545869 25 - TSS region transcription start site region 89989
Gm17853 9 60548195 to 60549543 1348 + pseudogene predicted gene, 17853
D9Mit207 9 60573431 to 60573577 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 207
Stheal8 9 60573431 to 60573577 146 QTL soft tissue heal 8
Heal28 9 60573431 to 60573577 146 QTL wound healing/regeneration 28
Lrrc49 9 60587224 to 60688322 101098 - protein coding gene leucine rich repeat containing 49
Tssr2893 9 60597854 to 60597857 3 + TSS region transcription start site region 2893
Tssr89990 9 60598930 to 60598942 12 - TSS region transcription start site region 89990
Tssr89991 9 60649674 to 60649677 3 - TSS region transcription start site region 89991
Tssr89992 9 60649686 to 60649740 54 - TSS region transcription start site region 89992
Tssr89993 9 60649743 to 60649745 2 - TSS region transcription start site region 89993
Tssr89994 9 60649749 to 60649790 41 - TSS region transcription start site region 89994
Tssr89995 9 60649793 to 60649805 12 - TSS region transcription start site region 89995
Tssr89996 9 60649867 to 60649878 11 - TSS region transcription start site region 89996
Tssr85486 9 60671960 to 60671965 5 + TSS region transcription start site region 85486
Tssr89997 9 60680975 to 60680979 4 - TSS region transcription start site region 89997
Tssr2894 9 60687443 to 60687452 9 - TSS region transcription start site region 2894
Tssr89998 9 60687459 to 60687485 26 - TSS region transcription start site region 89998
B930082K07Rik 9 60687719 to 60690397 2678 + lincRNA gene RIKEN cDNA B930082K07 gene
Cpgi21871 9 60687803 to 60688158 355 CpG island CpG island 21871
Tssr89999 9 60687877 to 60687946 69 - TSS region transcription start site region 89999
Tssr90000 9 60687959 to 60687974 15 - TSS region transcription start site region 90000
Tssr90001 9 60688034 to 60688053 19 - TSS region transcription start site region 90001
Tssr90002 9 60688065 to 60688082 17 - TSS region transcription start site region 90002
Tssr90003 9 60688128 to 60688184 56 - TSS region transcription start site region 90003
Cpgi21872 9 60712672 to 60713829 1157 CpG island CpG island 21872
Tssr85487 9 60713105 to 60713159 54 + TSS region transcription start site region 85487
Larp6 9 60713121 to 60738801 25680 + protein coding gene La ribonucleoprotein domain family, member 6
Cpgi21873 9 60737628 to 60737863 235 CpG island CpG island 21873
Cpgi21874 9 60743309 to 60743519 210 CpG island CpG island 21874
1700036A12Rik 9 60767909 to 60770276 2367 + lincRNA gene RIKEN cDNA 1700036A12 gene
Cpgi21875 9 60794274 to 60795267 993 CpG island CpG island 21875
Tssr85488 9 60794468 to 60794577 109 + TSS region transcription start site region 85488
Uaca 9 60794542 to 60880370 85828 + protein coding gene uveal autoantigen with coiled-coil domains and ankyrin repeats
Tssr85489 9 60813670 to 60813705 35 + TSS region transcription start site region 85489
Gm9869 9 60821552 to 60838200 16648 - antisense lncRNA gene predicted gene 9869
Tssr85490 9 60837580 to 60837599 19 + TSS region transcription start site region 85490
Tssr85491 9 60837696 to 60837755 59 + TSS region transcription start site region 85491
Tssr85492 9 60837864 to 60837898 34 + TSS region transcription start site region 85492
Tssr85493 9 60837902 to 60837914 12 + TSS region transcription start site region 85493
Tssr85494 9 60838060 to 60838073 13 + TSS region transcription start site region 85494
Tssr85495 9 60840721 to 60840735 14 + TSS region transcription start site region 85495
Gm33643 9 60864683 to 60869568 4885 - lncRNA gene predicted gene, 33643
Tssr85496 9 60866113 to 60866164 51 + TSS region transcription start site region 85496
Tssr85497 9 60885890 to 60885894 4 + TSS region transcription start site region 85497
Gm47923 9 60919223 to 60949373 30150 + lincRNA gene predicted gene, 47923
Gm5122 9 61017069 to 61019797 2728 + lincRNA gene predicted gene 5122
Gm39348 9 61051399 to 61055873 4474 - lincRNA gene predicted gene, 39348
Gm33699 9 61052172 to 61056923 4751 + lincRNA gene predicted gene, 33699
Tssr85498 9 61054637 to 61054651 14 + TSS region transcription start site region 85498
Cpgi21876 9 61056573 to 61056814 241 CpG island CpG island 21876
Gm46116 9 61056933 to 61059180 2247 + lncRNA gene predicted gene, 46116
D9Mit143 9 61074126 to 61074267 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 143
Cpgi21877 9 61081727 to 61081883 156 CpG island CpG island 21877
Gm34004 9 61081893 to 61116705 34812 + lincRNA gene predicted gene, 34004
D9Mit72 9 61098862 to 61098994 132 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 72
4933433G08Rik 9 61103012 to 61105385 2373 - lincRNA gene RIKEN cDNA 4933433G08 gene
Tssr90004 9 61105380 to 61105392 12 - TSS region transcription start site region 90004
Gm33914 9 61109619 to 61127031 17412 - lincRNA gene predicted gene, 33914
Tssr85499 9 61110965 to 61110997 32 + TSS region transcription start site region 85499
I730028E13Rik 9 61138515 to 61145259 6744 + lincRNA gene RIKEN cDNA I730028E13 gene
Tssr85500 9 61139186 to 61139207 21 + TSS region transcription start site region 85500
Tssr2895 9 61156918 to 61156937 19 + TSS region transcription start site region 2895
Tssr85501 9 61200379 to 61200381 2 + TSS region transcription start site region 85501
Gm34105 9 61206679 to 61212915 6236 + lincRNA gene predicted gene, 34105
Tssr85502 9 61225604 to 61225622 18 + TSS region transcription start site region 85502
B930092H01Rik 9 61259227 to 61293809 34582 - lincRNA gene RIKEN cDNA B930092H01 gene
Gm34264 9 61312285 to 61328613 16328 - lncRNA gene predicted gene, 34264
Cpgi21878 9 61315716 to 61315968 252 CpG island CpG island 21878
Gm39349 9 61339483 to 61348728 9245 + lncRNA gene predicted gene, 39349
Tssr2896 9 61356042 to 61356045 3 + TSS region transcription start site region 2896
Cpgi21879 9 61369412 to 61369880 468 CpG island CpG island 21879
Gm34157 9 61369678 to 61370490 812 - lncRNA gene predicted gene, 34157
Tssr90005 9 61370479 to 61370528 49 - TSS region transcription start site region 90005
Cpgi21880 9 61370520 to 61371659 1139 CpG island CpG island 21880
Tssr85503 9 61370769 to 61370807 38 + TSS region transcription start site region 85503
Gm10655 9 61370797 to 61372193 1396 - lincRNA gene predicted gene 10655
Cpgi21881 9 61372149 to 61374688 2539 CpG island CpG island 21881
Tssr90006 9 61372187 to 61372211 24 - TSS region transcription start site region 90006
Tssr85504 9 61372309 to 61372320 11 + TSS region transcription start site region 85504
Tssr85505 9 61372359 to 61372383 24 + TSS region transcription start site region 85505
Tle3 9 61372366 to 61418497 46131 + protein coding gene transducin-like enhancer of split 3
Tssr85506 9 61372388 to 61372404 16 + TSS region transcription start site region 85506
Tssr85507 9 61372465 to 61372478 13 + TSS region transcription start site region 85507
Tssr85508 9 61373352 to 61373391 39 + TSS region transcription start site region 85508
Tssr85509 9 61373505 to 61373521 16 + TSS region transcription start site region 85509
Tssr85510 9 61373608 to 61373650 42 + TSS region transcription start site region 85510
Tssr85511 9 61391868 to 61391877 9 + TSS region transcription start site region 85511
Tcq13 9 109260000 to 59990000 -49270000 QTL total cholesterol QTL 13